Novel Shape Evolution in Sn Isotopes from Magic Numbers 50 to 82.

A novel shape evolution in the Sn isotopes by the state-of-the-art application of the Monte Carlo shell model calculations is presented in a unified way for the ^{100-138}Sn isotopes. A large model space consisting of eight single-particle orbits for protons and neutrons is taken with the fixed Hamiltonian and effective charges, where protons in the 1g_{9/2} orbital are fully activated. While the significant increase of the B(E2;0_{1}^{+}→2_{1}^{+}) value, seen around ^{110}Sn as a function of neutron number (N), has remained a major puzzle over decades, it is explained as a consequence of the shape evolution driven by proton excitations from the 1g_{9/2} orbital. A second-order quantum phase transition is found around N=66, connecting the phase of such deformed shapes to the spherical pairing phase. The shape and shell evolutions are thus described, covering topics from the Gamow-Teller decay of ^{100}Sn to the enhanced double magicity of ^{132}Sn.

Quantum Phase Transition in the Shape of Zr isotopes.

The rapid shape change in Zr isotopes near neutron number N=60 is identified to be caused by type II shell evolution associated with massive proton excitations to its 0g_{9/2} orbit, and is shown to be a quantum phase transition. Monte Carlo shell-model calculations are carried out for Zr isotopes of N=50-70 with many configurations spanned by eight proton orbits and eight neutron orbits. Energy levels and B(E2) values are obtained within a single framework in good agreement with experiment, depicting various shapes in going from N=50 to 70. The novel coexistence of prolate and triaxial shapes is suggested.

Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence.

Large sulfur-oxidizing bacteria, which accumulate a high concentration of nitrate, are important constituents of aquatic sediment ecosystems. No representative of this group has been isolated in pure culture, and only fragmented draft genome sequences are available for these microorganisms. In this study, we successfully reconstituted the genome of Thioploca ingrica from metagenomic sequences, thereby generating the first complete genome sequence from this group. The Thioploca samples for the metagenomic analysis were obtained from a freshwater lake in Japan. A PCR-free paired-end library was constructed from the DNA extracted from the samples and was sequenced on the Illumina MiSeq platform. By closing gaps within and between the scaffolds, we obtained a circular chromosome and a plasmid-like element. The reconstituted chromosome was 4.8 Mbp in length with a 41.2% GC content. A sulfur oxidation pathway identical to that suggested for the closest relatives of Thioploca was deduced from the reconstituted genome. A full set of genes required for respiratory nitrate reduction to dinitrogen gas was also identified. We further performed a proteomic analysis of the Thioploca sample and detected many enzymes/proteins involved in sulfur oxidation, nitrate respiration and inorganic carbon fixation as major components of the protein extracts from the sample, suggesting that these metabolic activities are strongly associated with the physiology of T. ingrica in lake sediment.

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.

The colonization of land by plants was a key event in the evolution of life. Here we report the draft genome sequence of the filamentous terrestrial alga Klebsormidium flaccidum (Division Charophyta, Order Klebsormidiales) to elucidate the early transition step from aquatic algae to land plants. Comparison of the genome sequence with that of other algae and land plants demonstrate that K. flaccidum acquired many genes specific to land plants. We demonstrate that K. flaccidum indeed produces several plant hormones and homologues of some of the signalling intermediates required for hormone actions in higher plants. The K. flaccidum genome also encodes a primitive system to protect against the harmful effects of high-intensity light. The presence of these plant-related systems in K. flaccidum suggests that, during evolution, this alga acquired the fundamental machinery required for adaptation to terrestrial environments.

Identification of novel serum biomarkers of hepatocellular carcinoma using glycomic analysis.

UNLABELLED: The altered N-glycosylation of glycoproteins has been suggested to play an important role in the behavior of malignant cells. Using glycomics technology, we attempted to determine the specific and detailed N-glycan profile for hepatocellular carcinoma (HCC) and investigate the prognostic capabilities. From 1999 to 2011, 369 patients underwent primary curative hepatectomy in our facility and were followed up for a median of 60.7 months. As normal controls, 26 living Japanese related liver transplantation donors were selected not infected by hepatitis B and C virus. Their mean age was 40.0 and 15 (57.7%) were male. We used a glycoblotting method to purify N-glycans from preoperative blood samples from this cohort (10 µL serum) which were then identified and quantified using mass spectrometry (MS). Correlations between the N-glycan levels and the clinicopathologic characteristics and outcomes for these patients were evaluated. Our analysis of the relative areas of all the sugar peaks identified by MS, totaling 67 N-glycans, revealed that a proportion had higher relative areas in the HCC cases compared with the normal controls. Fourteen of these molecules had an area under the curve of greater than 0.80. Analysis of the correlation between these 14 N-glycans and surgical outcomes by univariate and multivariate analysis identified G2890 (m/z value, 2890.052) as a significant recurrence factor and G3560 (m/z value, 3560.295) as a significant prognostic factor. G2890 and G3560 were found to be strongly correlated with tumor number, size, and vascular invasion. CONCLUSION: Quantitative glycoblotting based on whole serum N-glycan profiling is an effective approach to screening for new biomarkers. The G2890 and G3560 N-glycans determined by tumor glycomics appear to be promising biomarkers for malignant behavior in HCCs. (HEPATOLOGY 2013;).