Reddening of the Unicellular Green Alga Euglena gracilis by Dried Bonito Stock and Intense Red Light Irradiation.

This study confirms for the first time that the significant red coloration of Euglena gracilis is induced by bonito stock (BS), a traditional Japanese food, and intense red light exposure (605~660 nm, 1000~1300 µmol photons/m2/s). Under the condition, excessive photosynthetic activity destroyed many chloroplasts, while carotenoids were maintained, resulting in the formation of reddened cells. The HPLC analysis revealed that diadinoxanthin was the primary carotenoid present in reddened cells. Additionally, an undefined xanthophyll, not produced under normal culture conditions, was synthesized and suggested to contain a C=O bond. While it has been reported that strong light stress can increase the total carotenoid content of cells, this study did not verify this claim, and it should be investigated further in future research. Under white light irradiation conditions (90 µmol photons/m2/s) in BS medium, no reddening of cells was observed, and good growth was achieved (over four times the cell density in CM medium on the seventh day). This cell suspension is considered to have a high nutritional value because it is composed of functional food, BS and E. gracilis. The fact that this method does not involve genetic modification suggests the possibility of industrial applications, including food use, even in reddened cells.

Analysis of Unique Motility of the Unicellular Green Alga Chlamydomonas reinhardtii at Low Temperatures down to -8 °C.

Previous studies of motility at low temperatures in Chlamydomonas reinhardtii have been conducted at temperatures of up to 15 °C. In this study, we report that C. reinhardtii exhibits unique motility at a lower temperature range (-8.7 to 1.7 °C). Cell motility was recorded using four low-cost, easy-to-operate observation systems. Fast Fourier transform (FFT) analysis at room temperature (20-27 °C) showed that the main peak frequency of oscillations ranged from 44 to 61 Hz, which is consistent with the 60 Hz beat frequency of flagella. At lower temperatures, swimming velocity decreased with decreasing temperature. The results of the FFT analysis showed that the major peak shifted to the 5-18 Hz range, suggesting that the flagellar beat frequency was decreasing. The FFT spectra had distinct major peaks in both temperature ranges, indicating that the oscillations were regular. This was not affected by the wavelength of the observation light source (white, red, green or blue LED) or the environmental spatial scale of the cells. In contrast, cells in a highly viscous (3.5 mPa·s) culture at room temperature showed numerous peaks in the 0-200 Hz frequency band, indicating that the oscillations were irregular. These findings contribute to a better understanding of motility under lower-temperature conditions in C. reinhardtii.

Observation of Coherent Perfect Absorption in Oil Film on Water Surface and Sensitive Detection of Refractive Index Anisotropy in the Film.

Sharp reflection dips of 50% were observed when white light was incident from the side of a cell on a 1 µm thick film of silicone oil (polydimethylsiloxane, PDMS, nearly transparent in visible light, with the extinction coefficient κ ≈ 0.0001) above a water surface in the cell so that the total reflection condition was satisfied at the oil-air interface. This is the first observation of a coherent perfect absorption (CPA) phenomenon in liquid. The experimental results can be reproduced by the Fresnel reflectance of the monolayer film, but the wavelength positions at which the dip appears for s-polarized and p-polarized light are reversed if the refractive index of the oil film is assumed to be isotropic. The experimental results were correctly reproduced by assuming that the extraordinary-ray refractive index (light polarized perpendicular to the interface) is 1% larger than the ordinary-ray refractive index (light polarized parallel to the interface). This indicates that the polarization dependence of the CPA phenomenon is extremely sensitive to the difference between the in-plane and out-of-plane refractive indices of the thin film.

Spatial Distribution of Flagellated Microalgae Chlamydomonas reinhardtii in a Quasi-Two-Dimensional Space.

Although the phenomenon of collective order formation by cell-cell interactions in motile cells, microswimmers, has been a topic of interest, most studies have been conducted under conditions of high cell density, where the space occupancy of a cell population relative to the space size ϕ>0.1 (ϕ is the area fraction). We experimentally determined the spatial distribution (SD) of the flagellated unicellular green alga Chlamydomonas reinhardtii at a low cell density (ϕ≈0.01) in a quasi-two-dimensional (thickness equal to cell diameter) restricted space and used the variance-to-mean ratio to investigate the deviation from the random distribution of cells, that is, do cells tend to cluster together or avoid each other? The experimental SD is consistent with that obtained by Monte Carlo simulation, in which only the excluded volume effect (EV effect) due to the finite size of cells is taken into account, indicating that there is no interaction between cells other than the EV effect at a low cell density of ϕ≈0.01. A simple method for fabricating a quasi-two-dimensional space using shim rings was also proposed.

Development of a Simple Fabrication Method for Magnetic Micro Stir Bars and Induction of Rotational Motion in Chlamydomonas reinhardtii.

A magnetic micro stirrer bar (MMSB) is used in the mixing operation of microfluidic devices. We have established a low-cost and easy method to make MMSBs using magnetic (neodymium magnets, magnet sheets) or non-magnetic powders (SUS304) as materials. We demonstrated three kinds of MMSB have respective advantages. To confirm the practical use of this MMSB, a cell suspension of the motile unicellular green alga Chlamydomonas reinhardtii was stirred in microwells. As a result, the number of rotating cells increased with only one of the two flagella mechanically removed by the shear force of the rotating bar, which facilitates the kinetic analysis of the flagellar motion of the cell. The rotational motion of the monoflagellate cell was modeled as translational (orbital) + spinning motion of a sphere in a viscous fluid and the driving force per flagellum was confirmed to be consistent with previous literature. Since the present method does not use genetic manipulations or chemicals to remove a flagellum, it is possible to obtain cells in a more naturally viable state quickly and easily than before. However, since the components eluted from the powder material harm the health of cells, it was suggested that MMSB coated with resin for long-term use would be suitable for more diverse applications.

Extremely large electro-optic effect of TPPS J-aggregates in the PVA or PVP polymer matrix and aqueous solution.

The molecules of tetra-phenyl porphyrin tetra-sulfonic acid (TPPS) form a J-aggregate via self-organization in aqueous solution. The J-aggregates formed in an aqueous solution with added hydrochloric acid were dispersed in PVP polymer and subjected to electric field modulation spectroscopy. The observed difference in the static polarizability Δαp between the excited and ground states in the TPPS J-aggregates reached a value 2.66 × 104 times and 1.22 × 105 times larger than in the monomer molecules in PVA and PVP polymer matrices, respectively. This large enhancement factor of the electro-optic effect (EOE) may be induced by the higher-order structure of the J-aggregate. The different enhancement factor for each polymer matrix may be introduced by the structural differences between the polymer matrices. Electric field modulation spectroscopy of the J-aggregate in aqueous solution showed an absorbance change of 25% of the magnitude of absorbance peak.

Algorithm of auto-balancing noise-canceling based on noise correlation for high-speed balancing, high-dynamic range, and robustness against DC-offset drift.

The influence of the light source noise can be reduced by subtracting the signal of the light source noise (reference signal) from that of the probe light (probe signal). Here, it is essential that the intensities of the signals are equated. To equate the intensities, an auto-balancing method is widely employed, where the gain of the probe signal is feedback-controlled, regarding the DC component in the subtraction as an error signal. However, DC-offset drift causes a deviation from the optimal intensity balance. Additionally, the DC component is often several orders of magnitude larger than the sample signal, which requires a high-dynamic range in the circuitry. Furthermore, if the feedback control is too fast, it cancels out the sample signal. In this study, we formulate a noise correlation auto-balancing method, where the correlation of the reference signal and residual noise in the subtraction is employed as the error signal. With this scheme, all the above problems are avoided. The feasibility of the algorithm was demonstrated by a prototype circuitry and signals emulating the probe and reference signals. It did not suffer from the DC-offset drift, while a 44-dB canceling rate with auto-balancing of a 1.3-MHz cutoff frequency was demonstrated. We foresee, such as in pump/probe measurements, that this scheme improves the robustness, dynamic range, and response time required to follow changes in transmittance and the measurement position of the sample while employing a light source that is advantageous in wavelength selectivity, coherence, and cost but is noisy.

Absorbance spectroscopy of light scattering samples placed inside an integrating sphere for wide dynamic range absorbance measurement.

In the absorbance measurement of a sample that scatters light significantly, it is necessary to consider the effect of the attenuation of incident light due to scattering on the measured absorbance. Since the usual absorbance measurement with an integrating sphere (IS) cannot remove the influence of backscattering, we performed the absorbance measurement considering the light scattered to almost all solid angles by placing the sample inside the IS. Ni(NO3)2 and Co(NO3)2 aqueous solutions were used as non-scattering samples, and Ni(NO3)2 solutions mixed with submicrometer polystyrene spheres as scatterers were used as scattering samples. The sample-concentration dependence of the measured absorbance was investigated for the cell containing the sample placed at the entrance of or inside the IS. It was found that even inside the IS, the measured absorbance does not match the true absorbance because light is partially multiply transmitted through the sample or detected without being transmitted through the sample. Due to the latter reason, the saturated absorbance inside the IS was lower than that at the entrance. We derived the formula with three fitting parameters relating the measured and true absorbance taking these factors into account, which quantitatively reproduced the concentration dependence of the absorbance in the non-scattering sample. When the scattering samples were placed at the entrance and inside of the IS, the measured absorbance increased and decreased, respectively, compared to those without scatterers. This decrease in absorbance for the scattering samples inside the IS was also explained by the proposed formula slightly modified.

Noninvasive and Safe Cell Viability Assay for Breast Cancer MCF-7 Cells Using Natural Food Pigment.

A dye exclusion test (DET) was performed to determine the viability of human breast cancer cells MCF-7, using natural food pigments as compared with trypan blue (TB), a typical synthetic dye for DET known to exhibit teratogenicity and cytotoxicity. We demonstrated that Monascus pigment (MP) is noninvasive to living cells and can effectively stain only dead cells. This study is the first verification of the applicability of MP to cancer cells. The appropriate MP concentration was 0.4% (0.02% as the concentration of pure MP) and all the dead cells were stained within 10 min. We found that the cell proliferation or the reduced nicotinamide adenine dinucleotide (NADH) activity of living cells was maintained over 48 h. Although 0.1% TB did not show an increase in dead cells, a marked decrease in NADH activity was confirmed. In addition, even when MP coexisted with cisplatin, staining of dead cells was maintained for 47 h, indicating stability to drugs (reagents). The cost of MP is estimated to be about 1/10 of TB. The fact that MP can be used as a cell viability determination reagent for Euglena and Paramecium, as shown in preceding papers, and also for MCF-7, as shown in this paper, indicates the possibility of application in more cells of different species.

Noninvasive and safe cell viability assay for Paramecium using natural pigment extracted from food.

Noninvasive, safe and cost-effective cell viability assay is important in many fields of biological research such as cell culture and counting. We examined ten typical natural pigments extracted from food to find that Monascus pigment (MP) or anthocyanin pigment (AP: purple sweet potato and purple cabbage) with Tris (Trimethylolaminomethane) works as a good indicator of viability assay for dye exclusion test (DET) of Paramecium. This was confirmed spectrally by scan-free, non-invasive absorbance spectral imaging A (x, y, λ) microscopy. We developed a new method of cell capture using a metal mesh to confine live Paramecium in a restricted space. This has the advantage that a low-cost and robust capture can be fabricated without using special equipment, compared to a conventional lab-on-a-chip. As a result, MP and AP stained dead cells as quick as methylene blue (MB), a synthetic dye conventionally used in DET within 1 min when treated with microwave and benzalkonium chloride. The natural pigments with Tris had little effect on inhibiting the growth of Paramecium, but MB killed all the cells within 1 h. MP is most useful because it allows non-invasive DET without Tris. This approach provides less invasive and safe DET.

Noninvasive and safe cell viability assay for Euglena gracilis using natural food pigment.

Noninvasive and safe cell viability assay is required in many fields such as regenerative medicine, genetic engineering, single-cell analysis, and microbial food culture. In this case, a safe and inexpensive method which is a small load on cells and the environment is preferable without requiring expensive and space-consuming equipment and a technician to operate. We examined eight typical natural food pigments to find Monascus pigment (MP) or anthocyanin pigment (AP) works as a good viability indicator of dye exclusion test (DET) for Euglena gracilis which is an edible photosynthetic green microalga. This is the first report using natural food pigments as cell viability assay. Euglena gracilis stained by MP or AP can be visually judged with a bright field microscope. This was spectrally confirmed by scan-free, non-invasive absorbance spectral imaging A(x, y, λ) microscopy of single live cells and principal component analysis (PCA). To confirm the ability of staining dead cells and examine the load on the cells, these two natural pigments were compared with trypan blue (TB) and methylene blue (MP), which are synthetic dyes conventionally used for DET. As a result, MP and AP had as good ability of staining dead cells treated with microwave as TB and MB and showed faster and more uniform staining for dead cells in benzalkonium chloride than them. The growth curve and the ratio of dead cells in the culture showed that the synthetic dyes inhibit the growth of E. gracilis, but the natural pigments do not. As the cell density increased, however, AP increased the ratio of stained cells, which was prevented by the addition of glucose. MP can stain dead cells in a shorter time than AP, while AP is more stable in color against long-term irradiation of intense light than MP. Due to the low toxicity of these pigments, viability of cells in culture can be monitored with them over a long period.

Absorbance spectra of the hematochrome-like granules and eyespot of Euglena gracilis by scan-free absorbance spectral imaging A(x, y, λ) within the live cells.

Euglena gracilis has an organelle resembling hematochrome, with an appearance similar to the eyespot and the absorption band spectrally overlapped with that of the carotenoid. To discriminate the hematochrome-like granules and eyespot, scan-free, non-invasive, absorbance spectral imaging A(x, y, λ) microscopy of single live cells, where A(x, y, λ) means absorbance at a position (x, y) on a two-dimensional image at a specific wavelength λ was applied. This technique was demonstrated to be a powerful tool for basic research on intracellular structural analysis. By this method, characteristic absorption spectra specific to the hematochrome-like granule or eyespot were identified among a variety of spectra observed depending on the location inside the organelles. The hematochrome-like granule was dark orange and deep green in its outline and had a characteristic absorption peak at 620 nm as well as at 676 to 698 nm, suggesting that its origin is a component of chloroplast including chlorophyll a. Furthermore, the representative spectra of these organelles were derived by principal component analysis of the absorbance and its position in absorbance image, indicating that they can be distinguished from each other and other regions. It was also confirmed that even in areas where these organelles and chloroplasts overlap, one can distinguish them from each other. The present research clarified the absorption spectra of the eyespot with 1 × 1 µm spatial resolution and those unpublished of hematochrome-like granules of E. gracilis, and indicated that one can statistically distinguish these organelles by this method.

Amplitude-phase cross talk as a deterioration factor of signal-to-noise ratio in phase-detection noise-cancellation technique for spectral pump/probe measurements and compensation of the amplitude-phase cross talk.

Noise cancellation of the light source is an important method to enhance the signal-to-noise ratio (SNR) and facilitate high-speed detection in pump/probe measurements. We developed a method to eliminate the noise for the multichannel spectral pump/probe measurements with a spectral dispersion of a white probe pulse light. In this method, the sample-induced intensity modulation is converted to the phase modulation of the pulse repetition irrespective of the intensity noise of the light source. The SNR is enhanced through the phase detection of the observed signal with the signal synchronized to the pulse repetition serving as the phase reference (synchronized signal). However, the shot-noise limited performance is not achieved with an intense probe light. In this work, we demonstrate that the performance limitation below the shot noise limit is caused by the amplitude-phase cross talk. It converts the amplitude noise into the phase noise and is caused by the space-charge effect in the photodetector, the reverse bias voltage drop across the load impedance, and the phase detection circuit. The phase delay occurs with an intense light at a PIN photodiode, whereas the phase is advanced in an avalanche photodiode. Although the amplitude distortion characteristics also reduce the performance, the distortion effect is equivalent to the amplitude-phase cross talk. We also propose possible ways to compensate the cross talk effect by using the phase modulation of the synchronized signal for the phase detection based on the instantaneous amplitude.

Orientation Control of Hemispherical Janus Particles and Metal Coating on the Selective Surface To Excite Surface Plasmon Polaritons in the Micro-Kretschmann Geometry.

Asymmetric-shaped particles (the Janus particle) are difficult to be arranged in a uniform orientation on a solid substrate. This difficulty prevents further modification of the selective surface of the particles for fabrication of the Janus particles with anisotropy of the shape and surface. We successfully arranged hemispherical particles in a uniform orientation at the air-water interface. The particles were arranged on the solid substrate in a uniform orientation by transferring the particle film onto the substrate. This arrangement enabled the fabrication of the Janus particles with anisotropy of the shape and surface by selective deposition of a film on either the equatorial plane or the spherical surface. Additionally, we demonstrated the function of the microscopic Kretschmann geometry for excitation of the surface plasmon polaritons of a thin metal film on the equatorial plane of a single hemispherical particle.

Quasi first-order Hermite Gaussian beam for enhanced sensitivity in Sagnac interferometer photothermal deflection spectroscopy.

The detection sensitivity of a Sagnac interferometer photothermal deflection spectroscopy was enhanced by changing the probe beam pattern from zero-order to a quasi-first-order Hermite Gaussian (QHG) beam. The nature of the higher order HG mode, where the beam pattern is preserved during propagation with an increased field gradient, is utilized to enhance the measurement sensitivity. In this spectroscopy, the lateral beam deflection due to the photothermal effect is sensitively detected as a change in the interference light intensity. The change in intensity is amplified due to the higher field gradient of the QHG(1,0) beam at the photodetector. This amplification effect was both numerically and experimentally demonstrated to obtain twofold improvement in the signal-to-noise ratio.

Hydrogen photoproduction in green algae Chlamydomonas reinhardtii sustainable over 2 weeks with the original cell culture without supply of fresh cells nor exchange of the whole culture medium.

Unicellular green algae Chlamydomonas reinhardtii are known to make hydrogen photoproduction under the anaerobic condition with water molecules as the hydrogen source. Since the hydrogen photoproduction occurs for a cell to circumvent crisis of its survival, it is only temporary. It is a challenge to realize persistent hydrogen production because the cells must withstand stressful conditions to survive with alternation of generations in the cell culture. In this paper, we have found a simple and cost-effective method to sustain the hydrogen production over 14 days in the original culture, without supply of fresh cells nor exchange of the culture medium. This is achieved for the cells under hydrogen production in a sulfur-deprived culture solution on the {anaerobic, intense light} condition in a desiccator, by periodically providing a short period of the recovery time (2 h) with a small amount of TAP(+S) supplied outside of the desiccator. As this operation is repeated, the response time of transition into hydrogen production (preparation time) is shortened and the rate of hydrogen production (build up time) is increased. The optimum states of these properties favorable to the hydrogen production are attained in a few days and stably sustained for more than 10 days. Since generations are alternated during this consecutive hydrogen production experiment, it is suggested that the improved hydrogen production properties are inherited to next generations without genetic mutation. The properties are reset only when the cells are placed on the {sulfur-sufficient, aerobic, moderate light} conditions for a long time (more than 1 day at least).

Noise cancellation with phase-detection technique for pump-probe measurement and application to stimulated Raman imaging.

Intensity noise on a probe beam is a serious obstacle to highly sensitive and high-speed pump-probe microscopy. In this report, a reference beam of the probe is prepared and delayed. The intensity modulation by the sample is measured as the phase modulation of the superposition of detected electrical signals of the probe and reference beams, and the intensity noise is canceled. We evaluate performance of the noise cancellation using the super-continuum light from a piece of photonic crystal fiber, and find that the noise is canceled by ∼26 dB. We then apply the method to a stimulated Raman microscope. This method contributes to highly sensitive and high-speed pump-probe imaging with various light sources.

Scan-Free Absorbance Spectral Imaging A(x, y, λ) of Single Live Algal Cells for Quantifying Absorbance of Cell Suspensions.

Label-free, non-invasive, rapid absorbance spectral imaging A(x,y,λ) microscopy of single live cells at 1.2 µm × 1.2 µm resolution with an NA = 0.85 objective was developed and applied to unicellular green algae Chlamydomonas reinhardtii. By introducing the fiber assembly to rearrange a two-dimensional image to the one-dimensional array to fit the slit of an imaging spectrograph equipped with a CCD detector, scan-free acquisition of three-dimensional information of A(x,y,λ) was realized. The space-resolved absorbance spectra of the eyespot, an orange organelle about 1 µm, were extracted from the green-color background in a chlorophyll-rich single live cell absorbance image. Characteristic absorbance change in the cell suspension after hydrogen photoproduction in C. reinhardtii was investigated to find a single 715-nm absorption peak was locally distributed within single cells. The formula to calculate the absorbance of cell suspensions from that of single cells was presented to obtain a quantitative, parameter-free agreement with the experiment. It is quantitatively shown that the average number of chlorophylls per cell is significantly underestimated when it is evaluated from the absorbance of the cell suspensions due to the package effect.

Development of a balanced detector with biased synchronous detection and application to near shot noise limited noise cancelling of supercontinuum pulse light.

We report on the development of a balanced detector suited for multicolor imaging. The source pulsed light is split into probe and reference pulsed light. The reference pulse is delayed through an optical path and the probe and reference pulses are detected by a single photodetector. The signs of the detected signals of the probe and reference pulses are flipped based on a signal synchronous to the light source. Then, the signals are averaged through a low-pass filter. The output signal is proportional to the intensity difference between the probe and the reference. This balanced detector has two features: (1) both the probe and reference pulsed lights are detected by a single photodetector and (2) a voltage bias on the sign flipping compensates for the optical-intensity unbalance between the probe and reference pulsed lights. The first feature enables the probe and reference pulses to travel along a common optical path from a sample through a spectrograph to the photodetector, which minimizes the intensity unbalance between the probe and reference pulses during imaging and spectroscopy. The second feature ensures the complete balanced-detection in whole wavelength range by compensating for the optical unbalance created by deviations in the splitting ratios of the probe and reference lights at different wavelengths. Although a higher signal to noise ratio (SNR) reached to near shot noise limited SNR is attained by attaching a resonator to the photodetector for pulse repetition, the electrical bias cannot compensate for the optical balance. This unbalance is, however, corrected by adjusting the phase of the synchronous signal. We applied the present balanced detection to a stimulated Raman microscope with supercontinuum probe light and demonstrated its noise cancelling performance through capturing polystyrene beads.

Excimer luminescence from nonresonantly excited pyrene and perylene molecules in solution.

By nonresonant excitation below the absorption edge of pyrene and perylene molecules in solution, efficient excimer luminescence is observed. For perylene in solution, there are two kinds of nonresonant excimer emission that closely resemble Y- and E-emissions in perylene crystal and perylene in polymer. The concentration dependence of the photon flux density of monomer and excimer emission is reasonably explained by a simple model with a few fitting parameters based on the ordinary excimer formation process, in which the excited-state monomer interacts with a ground-state monomer. Observed quantum efficiency of excimer formation is by orders of magnitude higher than that expected if a monomer is excited from thermally populated vibrational levels. The experimental evidence for direct resonant excitation of excimers in perylene nanocrystals is obtained from the absence of anti-Stokes emission. This is due to a symmetry-breaking effect close to crystal surface, suggesting that excimers are formed through a more efficient process in solution, such as resonant excitation of weakly interacting molecules with a symmetry-broken intermolecular configuration.