An evolutionary perspective on genetic load in small, isolated populations as informed by whole genome resequencing and forward-time simulations.

Small populations are vulnerable to increased genetic load and drift that can lead to reductions in fitness and adaptive potential. By analyzing 66 individual whole genomes of Montezuma Quail (Cyrtonyx montezumae) from multiple populations, we illustrate how genetic load is dynamic over evolutionary time. We show that Montezuma Quail are evolving like a ring species, where the terminal extant populations from Arizona and Texas have been separated for ~16,500 years. The Texas populations have remained small but stable since the separation, whereas the Arizona population is much larger today but has been contracting for thousands of years. Most deleterious mutations across the genome are young and segregating privately in each population and a greater number of deleterious alleles are present in the larger population. Our data indicate that ancestral load is purged during strong bottlenecks, but the reduced efficiency of selection in small populations means that segregating deleterious mutations are more likely to rise in frequency over time. Forward-time simulations indicate that severe population declines in historically large populations is more detrimental to individual fitness, whereas long-term small populations are more at risk for reduced adaptive potential and population-level fitness. Our study highlights the intimate connections among evolutionary history, historical demography, genetic load, and evolutionary potential in wild populations.

Detection of Dirofilaria immitis via integrated serological and molecular analyses in coyotes from Texas, United States.

Wild canids serve as reservoir for various vector-borne pathogens of veterinary and medical importance, including the canine heartworm, Dirofilaria immitis. In North and Central America, coyotes (Canis latrans) may be a relevant reservoir host for heartworm transmission. The objective of this study was to determine the occurrence of D. immitis in coyotes across Texas using integrated antigen detection test and molecular assays. Matching whole blood and serum samples were collected from 122 coyotes from different locations across the state of Texas, United States, encompassing nine counties. Collections occurred from February to April 2016, and December 2016. Samples were assessed serologically using a commercial microtiter plate ELISA (DiroCHEK®), and molecularly by conventional PCR targeting the cytochrome oxidase c subunit 1 (cox1) and NADH dehydrogenase subunit 5 (nad5) of the mitochondrial DNA, and via a TaqMan© probe-based real-time PCR protocol, also targeting a fragment of the cox1 gene. Overall, 12 (9.83%) samples tested positive when serological and molecular results were combined. Seven of 122 samples (5.73%) were antigen-positive, 8 (6.55%) were qPCR-positive, and 4 (3.27%) were positive using conventional PCR. Of 12 positive samples, 4 tested antigen-positive by DiroCHEK® but were negative in all molecular tests, another 4 tested positive by at least one of the molecular assays but tested negative by DiroCHEK®, and 3 samples tested positive by both antigen test and at least one of the molecular assays. Two samples (16.67%) tested positive on both the antigen test and both conventional PCR and qPCR. Our study confirmed the presence of D. immitis infection in coyotes from southern and northern Texas. The combination of serologic and molecular diagnostic tests was proven synergistic for the identification of D. immitis infections, including occult dirofilariosis, and revealed a more accurate picture of heartworm occurrence in the sampled coyotes.

Understanding tolerance for an invasive species: An investigation of hunter acceptance capacity for wild pigs (Sus scrofa) in Texas.

Invasive species and their establishment in new areas have significant impacts on the ecological, economic, and social well-being of our planet. Wild pigs (Sus scrofa) are one of the world's most formidable invasive species, particularly in the United States. They cause significant damage to agriculture and ecosystems, and can transmit diseases to livestock, wildlife, and people. There is an inherent social dimension to the issue of wild pigs due in part to the fact that people hunt them. Hunting contributes to both the control and spread of this species. The objectives of this study were to: 1) determine hunters' overall tolerance for wild pigs; and 2) identify what factors predict hunters' tolerance. Results obtained from a survey of Texas hunters in 2019 indicated that 83% of hunters had a low level of tolerance for wild pigs, with approximately 63% preferring to see the population reduced and 20% preferring to see the population completely removed. Fourteen percent preferred that wild pig numbers remain the same, and 2% preferred to see numbers increase. Results from regression analysis indicated that approximately 53% of the variance in tolerance for wild pigs was explained by motivations and preferences for hunting wild pigs, level of concern for wild pig damage, and overall attitudes toward wild pigs. Results of this research are useful in expanding current knowledge about human tolerance for wildlife, including those species that are non-native and invasive, and in identifying important factors affecting how hunters perceive and interact with wild pigs. Study findings are also helpful in informing the development of effective and socially acceptable management plans for wild pigs, as well as communication efforts aimed at influencing hunters' attitudes and behaviors in the wild pig management context.

Prevalence of common tick-borne pathogens in white-tailed deer and coyotes in south Texas.

Determining which wildlife hosts are involved in the enzootic cycles of tick-borne diseases (TBD) enables enhanced surveillance and risk assessment of potential transmission to humans and domestic species. Currently, there is limited data to indicate which tick-borne pathogens (TBP) can infect coyotes. Additionally, limited surveillance data for white-tailed deer (WTD) in south Texas is available. The purpose of this study was to detect current infections of common TBP in coyotes and WTD in south Texas, which represents a transboundary region and common site for animal migrations across the U.S.-Mexico border. A patent pending real-time PCR assay, the TickPath layerplex test, was used to screen whole-blood samples for species from Borrelia, Rickettsia, Ehrlichia, Anaplasma, and Babesia genera. Conventional PCR and subsequent sequencing of positive samples confirmed the pathogen species. Of 122 coyote samples, 11/122 (9.0%) were positive for Babesia vogeli and 1/122 (0.8%) was positive for Borrelia turicatae. Of 245 WTD samples, 1/245 (0.4%) was positive for Anaplasma platys, 4/245 (1.6%) were positive for Ehrlichia chaffeensis, and 18/245 (7.3%) were positive for Theileria cervi. All positive samples from both species, except for one coyote, were collected from counties located in south Texas along the U.S.Mexico border. One coyote positive for B. vogeli originated from a county in northern Texas. The results from this study depicts the first known molecular detection of B. turicatae in a coyote, and demonstrates that coyotes and WTDs can potentially serve as sentinels for several zoonotic TBD as well as TBD that affect domestic animals.

Dynamics of animal joint space use: a novel application of a time series approach.

BACKGROUND: Animal use is a dynamic phenomenon, emerging from the movements of animals responding to a changing environment. Interactions between animals are reflected in patterns of joint space use, which are also dynamic. High frequency sampling associated with GPS telemetry provides detailed data that capture space use through time. However, common analyses treat joint space use as static over relatively long periods, masking potentially important changes. Furthermore, linking temporal variation in interactions to covariates remains cumbersome. We propose a novel method for analyzing the dynamics of joint space use that permits straightforward incorporation of covariates. This method builds upon tools commonly used by researchers, including kernel density estimators, utilization distribution intersection metrics, and extensions of linear models. METHODS: We treat the intersection of the utilization distributions of two individuals as a time series. The series is linked to covariates using copula-based marginal beta regression, an alternative to generalized linear models. This approach accommodates temporal autocorrelation and the bounded nature of the response variable. Parameters are easily estimated with maximum likelihood and trend and error structures can be modeled separately. We demonstrate the approach by analyzing simulated data from two hypothetical individuals with known utilization distributions, as well as field data from two coyotes (Canis latrans) responding to appearance of a carrion resource in southern Texas. RESULTS: Our analysis of simulated data indicated reasonably precise estimates of joint space use can be achieved with commonly used GPS sampling rates (s.e.=0.029 at 150 locations per interval). Our analysis of field data identified an increase in spatial interactions between the coyotes that persisted for the duration of the study, beyond the expected duration of the carrion resource. Our analysis also identified a period of increased spatial interactions before appearance of the resource, which would not have been identified by previous methods. CONCLUSIONS: We present a new approach to the analysis of joint space use through time, building upon tools commonly used by ecologists, that permits a new level of detail in the analysis of animal interactions. The results are easily interpretable and account for the nuances of bounded serial data in an elegant way.

Molecular prevalence and ecoregion distribution of select tick-borne pathogens in Texas dogs.

Tick-borne diseases (TBD), caused by borrelial, rickettsial and babesial pathogens, are common across the United States and can cause severe clinical disease in susceptible hosts, such as domestic dogs. However, there are limited TBD molecular epidemiological reports for dogs in Texas, and none for the non-Lyme borrelial pathogen responsible for causing tick-borne relapsing fever (TBRF). Therefore, data to support the prevalence of TBRF in the canine population is inadequate. This study aimed to characterize the molecular prevalence of 11 causative agents responsible for three TBD groups within domestic dogs with an emphasis on pathogen distribution within Texas ecoregions. A total representative number of 1,171 whole-blood samples were collected opportunistically from two Texas veterinary diagnostic laboratories. A layerplex real-time PCR assay was utilized to screen the dog samples for all 11 pathogens simultaneously. The overall molecular infection prevalence of disease was 0.68% borrelial, 1.8% rickettsial and 0.43% babesial pathogens, for a TBD total of 2.73% across Texas. Higher molecular prevalence was observed when analysed by ecoregion distinction, including 5.78% rickettsial infections by Ehrlichia canis and Anaplasma platys in the Rolling Plains ecoregion, and an average of 1.1% Borrelia turicatae and 1.0% Babesia gibsoni across detected ecoregions. To our knowledge, our findings indicate the first molecular detection of A. platys in Texas, and the first report of coinfections with E. canis and A. platys in dogs of Texas. The zoonotic concerns associated with TBDs, in conjunction with dogs' implication as an effective sentinel for human disease, highlight the importance of characterizing and monitoring regions associated with active infections in dogs. Surveillance data obtained from this study may aid public health agencies in updating maps depicting high-risk areas of disease and developing preventative measures for the affected areas.

Inadequate thermal refuge constrains landscape habitability for a grassland bird species.

Ecologists have long recognized the influence that environmental conditions have on abundance and range extent of animal species. We used the northern bobwhite (Colinus virginianus; hereafter bobwhite) as a model species for studying how microclimates serve as refuge against severe weather conditions. This species serves as an indicator or umbrella species for other sensitive ground-nesting, grassland obligate species. We conducted a mensurative field experiment in the rolling plains of Texas, USA, a semi-arid ecosystem on the southwestern periphery of bobwhite range, to determine whether native bunch grasses, apparently suitable for bobwhite nesting, could reduce ambient temperature below levels harmful for eggs. During the nesting season, we compared temperature and relative humidity readings at daily heat maxima (i.e., the 3 h during each day with highest temperatures) during the nesting season over the course of two years at 63 suitable nest sites paired with 63 random locations (n = 126) using two sensors at ∼10 and ∼60 cm above ground level. Mean temperature at nest height was 2.3% cooler at nest sites (35.99 °C ± 0.07 SE) compared to random locations (36.81 °C ± 0.07 SE); at ambient height, nest sites were slightly cooler (32.78 °C ± 0.06 SE) than random location (32.99 °C ± 0.06 SE). Mean relative humidity at nest sites was greater at nest height (34.53% ± 0.112 SE) and ambient height (36.22% ± 0.10 SE) compared to random locations at nest (33.35% ± 0.12 SE) and ambient height (35.75% ± 0.10 SE). Based on these results, cover at sites that appear visually suitable for nesting by bobwhites and other ground nesting birds provided adequate thermal refuge in the rolling plains by maintaining cooler, moister microclimates than surrounding non-nesting locations. Post-hoc analyses of data revealed that habitat conditions surrounding suitable nest sites strongly influenced thermal suitability of the substrate. Given that eggs of bobwhites and probably other species would experience lethal temperatures without these thermal refuges in the context of proper habitat condition, nesting vegetation is a critical component of niche space for bobwhites and other ground nesting birds in semi-arid regions. Many contemporary land uses, however, degrade or destroy bunch grasses and grassland systems, and thus decrease landscape inhabitability. Conservationists working with obligate grassland species that require bunch grasses in semi-arid regions should develop land management strategies that maximize the availability of these thermal refuges across space and time.