Novel Microsatellite Tags Hold Promise for Illuminating the Lost Years in Four Sea Turtle Species.

After hatching, sea turtles leave the nest and disperse into the ocean. Many years later, they return to their natal coastlines. The period between their leaving and their returning to natal areas, known as the "Lost Years", is poorly understood. Satellite tracking studies aimed at studying the "Lost Years" are challenging due to the small size and prolonged dispersal phases of young individuals. Here, we summarize preliminary findings about the performance of prototype microsatellite tags deployed over a three-year period on 160 neonate to small juvenile sea turtles from four species released in the North Atlantic Ocean. We provide an overview of results analyzing tag performance with metrics to investigate transmission characteristics and causes of tag failure. Our results reveal that, despite certain unfavorable transmission features, overall tag performance was satisfactory. However, most track durations were shorter than those observed on individuals of similar size in other studies and did not allow for detailed analyses of trajectories and turtle behavior. Our study further suggests that tracking durations are correlated with the targeted species, highlighting a lack of robustness against some neritic behaviors. Unprecedented diving data obtained for neonate sea turtles in this study suggest that the vertical behaviors of early juveniles are already too strenuous for these miniaturized tags. Our findings will help to inform the biologging research community, showcasing recent technological advances for the species and life stages within our study.

Effects of gear modifications in a North Atlantic pelagic longline fishery: A multiyear study.

The threat of population declines caused by pelagic longline fisheries in the Atlantic has increased the concern to find strategies that minimize the bycatch and mortality of non-target marine animals. Gear modification, such as the use of circle hooks instead of conventional J-hooks, has been identified as an effective bycatch reduction strategy in different pelagic longline fisheries around the world. This study aimed to verify the effectiveness of the use of circle hooks by quantifying catch rates, relative size selectivity, and anatomical hooking position for the most common target species (swordfish, Xiphias gladius, and blue shark, Prionace glauca), and some bycatch species (loggerhead sea turtles, Caretta caretta, and shortfin mako, Isurus oxyrinchus) caught by the Azorean longline fishing fleet. The trial was conducted for five consecutive years (2000-2004) using eight different types of hooks. In general, the blue shark catches using circle hooks were significantly higher compared to J (Mustad 9/0). The circle hooks also showed high probabilities of catching juvenile blue sharks. Conversely, the circle hooks were efficient in reducing the loggerhead sea turtle bycatch and were related to fewer catches of small sea turtle individuals. The use of circle hooks was also associated with reduced swordfish catches compared to J (Mustad 9/0), and the effect of hook types on length at capture was only significant for Circle (L. & P. 18/0-CLP18) and Ringed Tuna (RT). No significant differences were observed comparing hook type to either catch rates or size selectivity for shortfin mako. Additionally, circle hooks were more likely to lodge in the mouth than in deeper anatomical positions, when compared to J (Mustad 9/0), for the four species analysed. The present study demonstrated that the use of circle hooks could mitigate the impact of the pelagic longline fisheries in the Azores by decreasing the bycatch of sea turtles and reducing animal injuries caused by deep hooking.

Sea turtle (Reptilia, Testudines) diversity and occurrence in the Azores Archipelago (NE Atlantic).

Background: Six species of marine turtles occur in the Azores Archipelago. The loggerhead, Carettacaretta (Linnaeus, 1758), is by far the most common species and is being constantly monitored and tagged by a joint project between the University of the Azores and the University of Florida since 1989. With the implementation of the tuna fishery observers (for dolphin safe seals), an increment of sea turtle reports has been verified as expected. The leather back turtle, Dermochelyscoriacea (Vandelli, 1761) is the second most observed species in the Azores' EEZ, a fact probably also linked to the tuna fishery observation programme. All other species are occasional/vagrant albeit the green turtle, Cheloniamydas (Linnaeus, 1758) is more commonly seen than the others. Historically, sea turtles were occasionally taken for food in specific fishing villages and ports. Since 1986, sea turtles, as well as all marine mammals, are fully protected in the Azores although human-related activities (e.g. plastics, discarded fishing gear) do generate serious injuries and deaths. New information: In this paper, we update sea turtle species' checklist for the Azores and give detailed geographic coordinates on their known occurrences.

Drivers of litter ingestion by sea turtles: Three decades of empirical data collected in Atlantic Europe and the Mediterranean.

Sea turtles are considered as bio-indicators for monitoring the efficiency of restoration measures to reduce marine litter impacts on health. However, the lack of extended and standardised empirical data has prevented the accurate analysis of the factors influencing litter ingestion and the relationships with individual health. Historic data collected from 1988 and standard data collected from 2016 were harmonised to enable such analyses on necropsied loggerhead turtles (Caretta caretta) in eight Mediterranean and North-East Atlantic countries. Litter was found in 69.24 % of the 1121 individuals, mostly single-use and fishing-related plastics. Spatial location, sex and life history stage explained a minor part of litter ingestion. While no relationships with health could be detected, indicating that all individuals can be integrated as bio-indicators, the mechanistic models published in literature suggest that the high proportion of plastics in the digestive contents (38.77 % per individual) could have long-term repercussions on population dynamics.

Litter ingestion and entanglement in green turtles: An analysis of two decades of stranding events in the NE Atlantic.

Survivorship of early life stages is key for the well-being of sea turtle populations, yet studies on animals that distribute around oceanic areas are very challenging. So far, the information on green turtles (Chelonia mydas) that use the open NE Atlantic as feeding grounds is scarce. Strandings occurring in oceanic archipelagos can provide relevant information about the biology, ecology and current anthropogenic pressures for megafauna inhabiting the open ocean. In this study, we analysed stranding events of green turtles found in the Azores archipelago to investigate interactions with marine litter. In addition, we quantified and characterized litter items stranded on beaches to provide a direct comparison between the ingested items with the debris found in the environment. A total of 21 juvenile green turtles were found stranded in the region between 2000 and 2020 (size range: 12-49 cm, CCL). Overall, 14% of the animals were entangled in marine litter and 86% of the turtles necropsied had ingested plastic. The mean abundance of items ingested was 27.86 ± 23.40 and 98% were white/transparent. Hard plastic fragments between 1 and 25 mm were the most common shape recovered in the turtles, similarly to what was found on the coastline. All of the litter items analysed with pyrolysis GC-MS revealed to be polyethylene (PE). This study provides the first baseline assessment of interactions of plastic litter with juvenile green turtles found at the east edge of the North Atlantic Subtropical Gyre. The combination of these results supports the hypothesis that migratory megafauna that use remote oceanic islands as a feeding ground are exposed to anthropogenic litter contamination dominated by plastics, even when these regions are located far away from big industrial centers or populated cities.

Climate-driven deoxygenation elevates fishing vulnerability for the ocean's widest ranging shark.

Climate-driven expansions of ocean hypoxic zones are predicted to concentrate pelagic fish in oxygenated surface layers, but how expanding hypoxia and fisheries will interact to affect threatened pelagic sharks remains unknown. Here, analysis of satellite-tracked blue sharks and environmental modelling in the eastern tropical Atlantic oxygen minimum zone (OMZ) shows shark maximum dive depths decreased due to combined effects of decreasing dissolved oxygen (DO) at depth, high sea surface temperatures, and increased surface-layer net primary production. Multiple factors associated with climate-driven deoxygenation contributed to blue shark vertical habitat compression, potentially increasing their vulnerability to surface fisheries. Greater intensity of longline fishing effort occurred above the OMZ compared to adjacent waters. Higher shark catches were associated with strong DO gradients, suggesting potential aggregation along suitable DO gradients contributed to habitat compression and higher fishing-induced mortality. Fisheries controls to counteract deoxygenation effects on shark catches will be needed as oceans continue warming.

Relative abundance of oceanic juvenile loggerhead sea turtles in relation to nest production at source rookeries: implications for recruitment dynamics.

After hatching, juveniles of most sea turtle species undertake long migrations across ocean basins and remain in oceanic habitats for several years. Assessing population abundance and demographic parameters during this oceanic stage is challenging. Two long-recognized deficiencies in population assessment are (i) reliance on trends in numbers of nests or reproductive females at nesting beaches and (ii) ignorance of factors regulating recruitment to the early oceanic stage. To address these critical gaps, we examined 15 years of standardized loggerhead sighting data collected opportunistically by fisheries observers in the Azores archipelago. From 2001 to 2015, 429 loggerheads were sighted during 67,922 km of survey effort. We used a model-based approach to evaluate the influence of environmental factors and present the first estimates of relative abundance of oceanic-stage juvenile sea turtles. During this period, relative abundance of loggerheads in the Azores tracked annual nest abundance at source rookeries in Florida when adjusted for a 3-year lag. This concurrence of abundance patterns indicates that recruitment to the oceanic stage is more dependent on nest abundance at source rookeries than on stochastic processes derived from short term climatic variability, as previously believed.

Data Collection on Marine Litter Ingestion in Sea Turtles and Thresholds for Good Environmental Status.

The following protocol is intended to respond to the requirements set by the European Union's Marine Strategy Framework Directives (MSFD) for the D10C3 Criteria reported in the Commission Decision (EU), related to the amount of litter ingested by marine animals. Standardized methodologies for extracting litter items ingested from dead sea turtles along with guidelines on data analysis are provided. The protocol starts with the collection of dead sea turtles and classification of samples according to the decomposition status. Turtle necropsy must be performed in authorized centers and the protocol described here explains the best procedure for gastrointestinal (GI) tract isolation. The three parts of the GI (esophagus, stomach, intestine) should be separated, opened lengthways and contents filtered using a 1 mm mesh sieve. The article describes the classification and quantification of ingested litter, classifying GI contents into seven different categories of marine litter and two categories of natural remains. The quantity of ingested litter should be reported as total dry mass (weight in grams, with two decimal places) and abundance (number of items). The protocol proposes two possible scenarios to achieve the Good Environmental Status (GES). First: "There should be less than X% of sea turtles having Y g or more plastic in the GI in samples of 50-100 dead turtles from each sub-region", where Y is the average weight of plastic ingested and X% is the percentage of sea turtles with more weight (in grams) of plastic than Y. The second one, which considers the food remain versus plastic as a proxy of individual health, is: "There should be less than X% of sea turtles having more weight of plastic (in grams) than food remains in the GI in samples of 50-100 dead turtles from each sub-region".

Distribution and composition of floating macro litter off the Azores archipelago and Madeira (NE Atlantic) using opportunistic surveys.

The distribution and composition of macro litter floating around oceanic islands is poorly known, especially in the North Atlantic. Due to its isolated location at the fringe of the North Atlantic subtropical gyre, the Azores archipelago has recently been proposed as a potential retention zone for floating litter. To further investigate this assumption, opportunistic surveys from pole-and-line tuna fishing boats were performed from 2015 to 2017 to document (1) the distribution and (2) the composition of the floating macro litter present off the Azores and Madeira islands. Among the 2406 visual transects, 482 floating debris were recorded and were mainly composed of general plastic user items (48%), plastic packaging (21%) and derelict fishing gears (18%). Average number of debris per transect was 0.19 ±â€¯0.5, with a total number ranging between 0 and 5 items per transect. For the majority of transects (84%), no debris was observed, 13% of the transects contained a single item, and only 3% contained more than one item. Although debris between 2.5 and 5 cm were recorded, 93% of the debris were larger than 5 cm. The GLMs showed strong effect of the observer (p < 0.001) and the standardized densities accounting for the observer bias were higher (1.39 ±â€¯0.14 items.km-2) than the observed densities (0.78 ±â€¯0.07 items.km-2). Debris densities were however relatively low and tended to aggregate around the Central group of the Azores (standardized mean: 0.90 ±â€¯0.20 items.km-2). Our findings therefore suggest that most of the debris might originate from far away land-based sources and from fishing activities. This study highlights the potential of fisheries observer programs to obtain cost-effective information on floating macro debris that are essential to support the implementation of the European Marine Strategy Framework Directive.

Plastic ingestion in oceanic-stage loggerhead sea turtles (Caretta caretta) off the North Atlantic subtropical gyre.

Juvenile oceanic-stage sea turtles are particularly vulnerable to the increasing quantity of plastic coming into the oceans. In this study, we analysed the gastrointestinal tracts of 24 juvenile oceanic-stage loggerheads (Caretta caretta) collected off the North Atlantic subtropical gyre, in the Azores region, a key feeding ground for juvenile loggerheads. Twenty individuals were found to have ingested marine debris (83%), composed exclusively of plastic items (primarily polyethylene and polypropylene) identified by µ-Fourier Transform Infrared Spectroscopy. Large microplastics (1-5mm) represented 25% of the total number of debris and were found in 58% of the individuals sampled. Average number of items was 15.83±6.09 (±SE) per individual, corresponding to a mean dry mass of 1.07±0.41g. The results of this study demonstrate that plastic pollution acts as another stressor for this critical life stage of loggerhead turtles in the North Atlantic.

Post-capture immune gene expression studies in the deep-sea hydrothermal vent mussel Bathymodiolus azoricus acclimatized to atmospheric pressure.

Deep-sea hydrothermal vents are extreme habitats that are distributed worldwide in association with volcanic and tectonic events, resulting thus in the establishment of particular environmental conditions, in which high pressure, steep temperature gradients, and potentially toxic concentrations of sulfur, methane and heavy metals constitute driving factors for the foundation of chemosynthetic-based ecosystems. Of all the different macroorganisms found at deep-sea hydrothermal vents, the mussel Bathymodiolus azoricus is the most abundant species inhabiting the vent ecosystems from the Mid-Atlantic Ridge (MAR). In the present study, the effect of long term acclimatization at atmospheric pressure on host-symbiotic associations were studied in light of the ensuing physiological adaptations from which the immune and endosymbiont gene expressions were concomitantly quantified by means of real-time PCR. The expression of immune genes at 0 h, 12 h, 24 h, 36 h, 48 h, 72 h, 1 week and 3 weeks post-capture acclimatization was investigated and their profiles compared across the samples tested. The gene signal distribution for host immune and bacterial genes followed phasic changes in gene expression at 24 h, 1 week and 3 weeks acclimatization when compared to other time points tested during this temporal expression study. Analyses of the bacterial gene expression also suggested that both bacterial density and activity could contribute to shaping the intricate association between endosymbionts and host immune genes whose expression patterns seem to be concomitant at 1 week acclimatization. Fluorescence in situ hybridization was used to assess the distribution and prevalence of endosymbiont bacteria within gill tissues confirming the gradual loss of sulfur-oxidizing (SOX) and methane-oxidizing (MOX) bacteria during acclimatization. The present study addresses the deep-sea vent mussel B. azoricus as a model organism to study how acclimatization in aquaria and the prevalence of symbiotic bacteria are driving the expression of host immune genes. Tight associations, unseen thus far, suggest that host immune and bacterial gene expression patterns reflect distinct physiological responses over the course of acclimatization under aquarium conditions.

Movements of blue sharks (Prionace glauca) across their life history.

Spatial structuring and segregation by sex and size is considered to be an intrinsic attribute of shark populations. These spatial patterns remain poorly understood, particularly for oceanic species such as blue shark (Prionace glauca), despite its importance for the management and conservation of this highly migratory species. This study presents the results of a long-term electronic tagging experiment to investigate the migratory patterns of blue shark, to elucidate how these patterns change across its life history and to assess the existence of a nursery area in the central North Atlantic. Blue sharks belonging to different life stages (n = 34) were tracked for periods up to 952 days during which they moved extensively (up to an estimated 28.139 km), occupying large parts of the oceanic basin. Notwithstanding a large individual variability, there were pronounced differences in movements and space use across the species' life history. The study provides strong evidence for the existence of a discrete central North Atlantic nursery, where juveniles can reside for up to at least 2 years. In contrast with previously described nurseries of coastal and semi-pelagic sharks, this oceanic nursery is comparatively vast and open suggesting that shelter from predators is not its main function. Subsequently, male and female blue sharks spatially segregate. Females engage in seasonal latitudinal migrations until approaching maturity, when they undergo an ontogenic habitat shift towards tropical latitudes. In contrast, juvenile males generally expanded their range southward and apparently displayed a higher degree of behavioural polymorphism. These results provide important insights into the spatial ecology of pelagic sharks, with implications for the sustainable management of this heavily exploited shark, especially in the central North Atlantic where the presence of a nursery and the seasonal overlap and alternation of different life stages coincides with a high fishing mortality.

Deep-water longline fishing has reduced impact on Vulnerable Marine Ecosystems.

Bottom trawl fishing threatens deep-sea ecosystems, modifying the seafloor morphology and its physical properties, with dramatic consequences on benthic communities. Therefore, the future of deep-sea fishing relies on alternative techniques that maintain the health of deep-sea ecosystems and tolerate appropriate human uses of the marine environment. In this study, we demonstrate that deep-sea bottom longline fishing has little impact on vulnerable marine ecosystems, reducing bycatch of cold-water corals and limiting additional damage to benthic communities. We found that slow-growing vulnerable species are still common in areas subject to more than 20 years of longlining activity and estimate that one deep-sea bottom trawl will have a similar impact to 296-1,719 longlines, depending on the morphological complexity of the impacted species. Given the pronounced differences in the magnitude of disturbances coupled with its selectivity and low fuel consumption, we suggest that regulated deep-sea longlining can be an alternative to deep-sea bottom trawling.

Marine reserves: size and age do matter.

Marine reserves are widely used throughout the world to prevent overfishing and conserve biodiversity, but uncertainties remain about their optimal design. The effects of marine reserves are heterogeneous. Despite theoretical findings, empirical studies have previously found no effect of size on the effectiveness of marine reserves in protecting commercial fish stocks. Using 58 datasets from 19 European marine reserves, we show that reserve size and age do matter: Increasing the size of the no-take zone increases the density of commercial fishes within the reserve compared with outside; whereas the size of the buffer zone has the opposite effect. Moreover, positive effects of marine reserve on commercial fish species and species richness are linked to the time elapsed since the establishment of the protection scheme. The reserve size-dependency of the response to protection has strong implications for the spatial management of coastal areas because marine reserves are used for spatial zoning.