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1.
Phys Chem Chem Phys ; 26(17): 12993-13005, 2024 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-38639076

RESUMO

Understanding charge transfer processes is essential to estimate the performance of organic photovoltaic technologies. Although experimental production is on the rise, predictability strongly relies on theoretical modeling, which is limited to the size of semiconductors. As a computationally favorable approach, we benchmarked the long-range corrected (LC) time-dependent (TD) formulation of the semi-empirical density functional-based tight-binding method (DFTB) for three polycyclic aromatic hydrocarbons (PAHs) and studied the DTP-IC-4Ph molecule, a PAH-based non-fullerene electron acceptor (NFA) with an A-D-A backbone structure. After a thorough investigation into the long-range parameter (ω) tuning for naphthalene, anthracene and pyrene, the excitation energies, oscillator strengths and Natural Transition Orbitals (NTOs) were compared with the standard ωB97X-D/6-31G(d,p) level of theory and the ADC2/6-31G(d,p) multiconfigurational method. We estimated mobility-related properties of the NFA and considered 1000 thermally accessible configurations to qualitatively reproduce the experimental absorption profile and investigate the energetic disorder. Finally, we conducted a fragment-based analysis using the one-electron transition density matrix (1TDM) to determine the character of the excited states and investigate the effect of side chains on exciton formation. Our results are sensitive to the level of theory and highly dependent on the long-range parameter but suggest that the presence of alkyl chains promotes a higher average charge delocalization and allows for additional hopping mechanisms, favoring the charge transfer dynamics.

2.
Comput Struct Biotechnol J ; 21: 346-353, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36582437

RESUMO

We report electron attachment (EA) measurements for the parent anion radical formation from coenzyme Q0 (CoQ0) at low electron energies (<2 eV) along with quantum chemical calculations. CoQ0 may be considered a prototype for the electron withdrawing properties of the larger CoQ n molecules, in particular ubiquinone (CoQ10), an electron carrier in aerobic cell respiration. Herein, we show that the mechanisms for the parent anion radical formation of CoQ0 and CoQ n (n = 1,2,4) are remarkably distinct. Reported EA data for CoQ1, CoQ2, CoQ4 and para-benzoquinone indicated stabilization of the parent anion radicals around 1.2-1.4 eV. In contrast, we observe for the yield of the parent anion radical of CoQ0 a sharp peak at âˆ¼ 0 eV, a shoulder at 0.07 eV and a peak around 0.49 eV. Although the mechanisms for the latter feature remain unclear, our calculations suggest that a dipole bound state (DBS) would account for the lower energy signals. Additionally, the isoprenoid side chains in CoQ n (n = 1,2,4) molecules seem to influence the DBS formation for these compounds. In contrast, the side chains enhance the parent anion radical stabilization around 1.4 eV. The absence of parent anion radical formation around 1.4 eV for CoQ0 can be attributed to the short auto-ionization lifetimes. The present results shed light on the underappreciated role played by the side chains in the stabilization of the parent anion radical. The isoprenoid tails should be viewed as co-responsible for the electron-accepting properties of ubiquinone, not mere spectators of electron transfer reactions.

3.
J Chem Phys ; 152(8): 084301, 2020 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-32113371

RESUMO

We have investigated the effect of microsolvation on the π* shape resonances of uracil, referred to as π1 * and π2 * in the order of increasing energy. Our study considered uracil-water aggregates with six solvent molecules obtained from Monte Carlo simulations in the liquid phase. To explore the ensemble statistics, we combined scattering calculations, performed in the static exchange and static exchange plus polarization approximations, with linear regressions of virtual orbital energies to the scattering results. In general, the solvent molecules stabilize the anion states, and the lower lying π1 * resonance becomes a bound state in most of the solute-water clusters. We also discuss how the strength of the H bonds can affect the energies of the anion states, in addition to the number and donor/acceptor characters of those bonds. The thermal distributions for the vertical attachment energies, obtained from 133 statistically uncorrelated solute-solvent clusters, are significantly broad in the energy scale of the autoionization widths. The distributions for the π1 * and π2 * anion states slightly overlap, thus giving rise to a quasi-continuum of attachment energies below ≲2.5 eV, in contrast to the gas phase picture of electron attachment to well separated resonances below the electronic excitation threshold. Both the stabilization of the anion states and the spread of attachment energies could be expected to favor the dissociative electron attachment processes believed to underlie the electron-induced damage to biomolecules.


Assuntos
Simulação de Dinâmica Molecular , Teoria Quântica , Uracila/química , Elétrons , Método de Monte Carlo , Solventes/química
4.
J Chem Phys ; 151(22): 224104, 2019 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-31837663

RESUMO

A novel theoretical framework for describing the dynamics of transient anions is presented. An ensemble of classical trajectories is propagated on-the-fly, where resonance energies are computed with bound state techniques, and resonance widths are modeled with a combination of bound state and scattering calculations. The methodology was benchmarked against quantum dynamics results for model potential energy curves, and excellent agreement was attained. As a first application, we considered the electron induced dissociation of chloroethane. We found that electron attachment readily stretches the C-Cl bond, which stabilizes the transient anion within ∼10 fs and leads to the release of fast chloride ions. Both magnitude and shape of the computed dissociative electron attachment cross sections are very similar to the available experimental data, even though we found the results to be very sensitive on the accuracy of the underlying methods. These encouraging results place the proposed methodology as a promising approach for studies on transient anions' dynamics of medium sized molecules.

5.
J Chem Phys ; 149(17): 174308, 2018 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-30408986

RESUMO

We report the results of ab initio calculations for elastic scattering and also for excitation of individual electronic states of para-benzoquinone (pBQ) by the impact of low-energy electrons. The calculations for elastic scattering were performed with the Schwinger multichannel method implemented with pseudopotentials (SMCPP) in the static-exchange (SE) plus polarization (SEP) approximation for energies up to 50 eV. The assignments for the resonance spectrum obtained in this study are, in general, in good agreement with previous results available in the literature. For electronic excitation by electron impact, the SMCPP method with N energetically open electronic states (N open ), at either the static-exchange (N open ch-SE) or the static-exchange-plus-polarisation (N open ch-SEP) approximation, was employed to calculate the scattering amplitudes using a channel coupling scheme that ranges from the 1ch-SEP up to the 89ch-SE level of approximation, depending on the energy of interest. Integral cross sections (ICSs) and differential cross sections (DCSs) were obtained for incident electron energies lying between 15 eV and 50 eV. The study focuses on the influence of multichannel coupling effects for electronically inelastic processes, more specifically, on how the number of excited states included in the open-channel space impacts upon the convergence of the cross sections at intermediate and higher energies. In particular, we found that the magnitude of DCS and ICS results for electronic excitation decreases as more channels are included in the calculations. To the best of our knowledge, there are no other experimental or theoretical ICS or DCS results for excitation into individual electronic states of pBQ available in the literature between 15 and 50 eV against which we might compare the present calculations.

6.
Phys Chem Chem Phys ; 20(34): 22368-22378, 2018 Aug 29.
Artigo em Inglês | MEDLINE | ID: mdl-30129642

RESUMO

Total electron scattering cross sections, from para-benzoquinone, for impact energies ranging between 1 to 200 eV, have been obtained by measuring the attenuation of a linear electron beam under magnetic confinement conditions. Random uncertainty limits on these values have been found to be within 5%. Systematic errors, due to the axial magnetic beam conditions in combination with the acceptance angle of the detector, have been evaluated by integrating our calculated independent atom model with the screening corrected additivity rule and interference term elastic differential cross sections over that detection acceptance angle. Our previous calculations and measurements on this molecule (Jones et al., J. Chem. Phys., 2018, 148, 124312 and J. Chem. Phys., 2018, 148, 204305), have been compiled and complemented with new elastic and inelastic scattering cross section calculations in order to obtain a comprehensive cross section data base, within the considered energy range, for modelling purposes. The self-consistency of the present data set has been evaluated by simulating the electron transport of 15 eV electrons in para-benzoquinone, and comparing those results with the observed transmitted intensity distribution.

7.
J Chem Phys ; 148(20): 204305, 2018 May 28.
Artigo em Inglês | MEDLINE | ID: mdl-29865824

RESUMO

We report absolute experimental integral cross sections (ICSs) for the electron impact excitation of 6 bands (Bands 0-V) of unresolved electronic-states in para-benzoquinone, for incident electron energies between 20 and 40 eV. Absolute vibrational-excitation ICSs, for 3 composite vibrational bands (Bands I-III), are also reported in that same energy range. In addition, ICSs calculated within our independent atom model (IAM) with screening corrected additivity rule (SCAR) formalism, extended to account for interference (I) terms that arise due to the multi-centre nature of the scattering problem, are also reported. The sum of those ICSs gives the IAM-SCAR+I total cross section (TCS) for electron-para-benzoquinone scattering. Where possible, those calculated IAM-SCAR+I ICSs are compared against corresponding results from the present measurements with an acceptable level of accord being obtained. Similarly, we also present results from our Schwinger multichannel method with pseudopotential (SMCPP) calculations. Here elastic ICSs and ICSs corresponding to the Bands 0-III of unresolved electronic-states are presented, with agreement between the SMCPP electronic-state ICSs and those from our measurements being in good qualitative accord. The energy range of our SMCPP computations is 16-50 eV. Using the binary-encounter-Bethe (BEB) approach, total ionization cross sections for this collision system were computed. Those total ionization cross sections were then added to our SMCPP ICS results, to derive SMCPP/BEB TCSs that are typically in very good accord with those from our IAM-SCAR+I approach.

8.
J Chem Phys ; 148(12): 124312, 2018 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-29604872

RESUMO

Angle resolved electron energy loss spectra (EELS) for para-benzoquinone (C6H4O2) have been recorded for incident electron energies of 20, 30, and 40 eV. Measured differential cross sections (DCSs) for electronic band features, composed of a combination of energetically unresolved electronic states, are subsequently derived from those EELS. Where possible, the obtained DCSs are compared with those calculated using the Schwinger multichannel method with pseudopotentials. These calculations were performed using a minimum orbital basis single configuration interaction framework at the static exchange plus polarisation level. Here, quite reasonable agreement between the experimental cross sections and the theoretical cross sections for the summation of unresolved states was observed.

9.
J Chem Phys ; 147(21): 214310, 2017 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-29221385

RESUMO

We report on the low energy anion spectra of 5-cyanateuracil (5-OCNU) and 5-thiocyanateouracil (5-SCNU), which have been the suggested potential radiosensitizers for use in cancer therapy [L. Chomicz et al., J. Phys. Chem. Lett. 4, 2853-2857 (2013)]. Employing bound state and scattering calculations, we obtained, for both molecules, a dipole bound state, a π* valence bound state, and four π* resonances, besides a σSCN* resonance for 5-SCNU. The cyanate and thiocyanate substituents give rise to additional long-lived π* resonances, compared to 5-halouracil radiosensitizers. From the reaction thresholds and the expected vibronic couplings among the anion states, efficient production of SCN and CN anions and radical fragments should be observed in dissociative electron attachment measurements for 5-SCNU. The corresponding dissociation processes in 5-OCNU are expected to be less effective in view of the lack of a long-lived σOCN* shape resonance and the little σ* admixture into the π* resonances located on the cyanate group. The present results thus indicate 5-SCNU as a more promising radiosensitizer at sub-excitation energies.


Assuntos
Cianatos/química , Radiossensibilizantes/química , Tiocianatos/química , Uracila/análogos & derivados , Ânions/química , Modelos Moleculares
10.
J Chem Phys ; 147(16): 164310, 2017 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-29096502

RESUMO

The efficient decomposition of nitroimidazoles (NIs) by low energy electrons is believed to underlie their radiosensitizing properties. Recent dissociative electron attachment (DEA) measurements showed that methylation at the N1 site unexpectedly suppresses the electron-induced reactions in 4(5)-NI. We report theoretical results that provide a clear interpretation of that astounding finding. Around 1.5 eV, DEA reactions into several fragments are initiated by a π* resonance, not considered in previous studies. The autoionization lifetime of this anion state, which limits the predissociation dynamics, is considerably shorter in the methylated species, thereby suppressing the DEA signals. On the other hand, the lifetime of the π* resonance located around 3 eV is less affected by methylation, which explains why DEA is still observed at these energies. Our results demonstrate how even a simple methylation can significantly modify the probabilities for DEA reactions, which may be significant for NI-based cancer therapy.

11.
J Chem Phys ; 147(24): 244304, 2017 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-29289127

RESUMO

We report on theoretical elastic and experimental vibrational-excitation differential cross sections (DCSs) for electron scattering from para-benzoquinone (C6H4O2), in the intermediate energy range 15-50 eV. The calculations were conducted with two different theoretical methodologies, the Schwinger multichannel method with pseudopotentials (SMCPP) and the independent atom method with screening corrected additivity rule (IAM-SCAR) that also now incorporates a further interference (I) term. The SMCPP with N energetically open electronic states (Nopen) at the static-exchange-plus-polarisation (Nopench-SEP) level was used to calculate the scattering amplitudes using a channel coupling scheme that ranges from 1ch-SE up to the 89ch-SEP level of approximation. We found that in going from the 38ch-SEP to the 89ch-SEP, at all energies considered here, the elastic DCSs did not change significantly in terms of both their shapes and magnitudes. This is a good indication that our SMCPP 89ch-SEP elastic DCSs are converged with respect to the multichannel coupling effect for the investigated intermediate energies. While agreement between our IAM-SCAR+I and SMCPP 89ch-SEP computations improves as the incident electron energy increases from 15 eV, overall the level of accord is only marginal. This is particularly true at middle scattering angles, suggesting that our SCAR and interference corrections are failing somewhat for this molecule below 50 eV. We also report experimental DCS results, using a crossed-beam apparatus, for excitation of some of the unresolved ("hybrid") vibrational quanta (bands I-III) of para-benzoquinone. Those data were derived from electron energy loss spectra that were measured over a scattered electron angular range of 10°-90° and put on an absolute scale using our elastic SMCPP 89ch-SEP DCS results. The energy resolution of our measurements was ∼80 meV, which is why, at least in part, the observed vibrational features were only partially resolved. To the best of our knowledge, there are no other experimental or theoretical vibrational excitation results against which we might compare the present measurements.

12.
J Chem Phys ; 145(4): 044310, 2016 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-27475364

RESUMO

We report a theoretical study on low-energy (<10 eV) elastic electron scattering from chlorophenol isomers, namely, para-chlorophenol (pCP), meta-chlorophenol (mCP), and ortho-chlorophenol (oCP). The calculations were performed with the Schwinger multichannel method with pseudopotentials, and analysis of the computed integral cross sections and virtual orbitals revealed one σCCl (∗), one σOH (∗), and three π(∗) shape resonances. We show that electron capture into the two lower lying π(∗) orbitals initiates dissociative processes that lead to the elimination of the chloride ion, accounting for the two overlapping peaks where this fragment was observed. Despite the relatively small differences on the energetics of the π(∗) resonances, a major isomeric effect was found on their corresponding autodetachment lifetimes, which accounts for the observed increasing cross sections in the progression pCP < mCP < oCP. In particular, dissociation from the π1 (∗) anion of pCP is largely suppressed because of the unfavorable mixing with the σCCl (∗) state. We found the intramolecular hydrogen bond present in oCP to have the opposite effects of stabilizing the σCCl (∗) resonance and destabilizing the σOH (∗) resonance. We also suggest that the hydrogen abstraction observed in chlorophenols and phenol actually takes place by a mechanism in which the incoming electron is directly attached to the dissociative σOH (∗) orbital.

13.
J Chem Phys ; 144(14): 144303, 2016 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-27083717

RESUMO

We report absolute experimental integral cross sections (ICSs) for electron impact excitation of bands of electronic-states in furfural, for incident electron energies in the range 20-250 eV. Wherever possible, those results are compared to corresponding excitation cross sections in the structurally similar species furan, as previously reported by da Costa et al. [Phys. Rev. A 85, 062706 (2012)] and Regeta and Allan [Phys. Rev. A 91, 012707 (2015)]. Generally, very good agreement is found. In addition, ICSs calculated with our independent atom model (IAM) with screening corrected additivity rule (SCAR) formalism, extended to account for interference (I) terms that arise due to the multi-centre nature of the scattering problem, are also reported. The sum of those ICSs gives the IAM-SCAR+I total cross section for electron-furfural scattering. Where possible, those calculated IAM-SCAR+I ICS results are compared against corresponding results from the present measurements with an acceptable level of accord being obtained. Similarly, but only for the band I and band II excited electronic states, we also present results from our Schwinger multichannel method with pseudopotentials calculations. Those results are found to be in good qualitative accord with the present experimental ICSs. Finally, with a view to assembling a complete cross section data base for furfural, some binary-encounter-Bethe-level total ionization cross sections for this collision system are presented.

14.
J Chem Phys ; 143(22): 224304, 2015 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-26671372

RESUMO

We report cross sections for electron-impact excitation of vibrational quanta in furfural, at intermediate incident electron energies (20, 30, and 40 eV). The present differential cross sections are measured over the scattered electron angular range 10°-90°, with corresponding integral cross sections subsequently being determined. Furfural is a viable plant-derived alternative to petrochemicals, being produced via low-temperature plasma treatment of biomass. Current yields, however, need to be significantly improved, possibly through modelling, with the present cross sections being an important component of such simulations. To the best of our knowledge, there are no other cross sections for vibrational excitation of furfural available in the literature, so the present data are valuable for this important molecule.

15.
J Chem Phys ; 143(14): 144308, 2015 Oct 14.
Artigo em Inglês | MEDLINE | ID: mdl-26472380

RESUMO

The electronic spectroscopy of isolated furfural (2-furaldehyde) in the gas phase has been investigated using high-resolution photoabsorption spectroscopy in the 3.5-10.8 eV energy-range, with absolute cross section measurements derived. Electron energy loss spectra are also measured over a range of kinematical conditions. Those energy loss spectra are used to derive differential cross sections and in turn generalised oscillator strengths. These experiments are supported by ab initio calculations in order to assign the excited states of the neutral molecule. The good agreement between the theoretical results and the measurements allows us to provide the first quantitative assignment of the electronic state spectroscopy of furfural over an extended energy range.


Assuntos
Furaldeído/química , Teoria Quântica , Espectroscopia de Perda de Energia de Elétrons , Elétrons , Espectrofotometria Ultravioleta
16.
Phys Chem Chem Phys ; 17(43): 28958-65, 2015 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-26456239

RESUMO

We report on a joint theoretical and experimental investigation into the electron-induced fragmentation of 2-chloroadenine, for electrons up to 12 eV. Elastic scattering calculations indicate an anion spectrum comprising a σ(CCl)* and four π* shape resonances, where the latter are systematically stabilised when compared to the analogue states of adenine. The measured ion yields indicate strong signals associated with the elimination of neutral hydrogen (peaking at 0.8 eV and with milder structures up to 2 eV), chloride ions and hydrochloric acid (both observed at around 0.2 and 0.9 eV). Bound state calculations indicate that the main feature for hydrogen abstraction arises from a vibrational Feshbach resonance on a dipole-bound state coupled to a σ(NH)* state, while the π2* and π3* resonances initiate this fragmentation process in the 1-2 eV region. On the other hand, the C-Cl bond cleavage would mainly arise from the formation of the π1* and π2* resonances, which couple to the dissociative σ(CCl)* state. Our results show that 2-chloroadenine efficiently dissociates into reactive species upon electron attachment, corroborating its potential as a radiosensitising drug.


Assuntos
Adenina/análogos & derivados , Adenina/química , Ânions , Elétrons , Hidrogênio/química , Teoria Quântica
17.
Phys Chem Chem Phys ; 17(26): 17271-8, 2015 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-26073436

RESUMO

The valence anion states of the potential radiosensitisers 5-bromouracil and 5-iodouracil were investigated through elastic scattering calculations. These compounds have rich spectra of negative ion states that trigger off different mechanisms for dissociative electron attachment. For each molecule, we obtained a bound π* anion, two π* shape resonances and a low lying σ* anion state, in addition to a dipole-bound state (the latter was obtained using bound-state techniques). The σ* anion, formed by electron attachment to an anti-bonding carbon-halogen orbital, was found to have resonant character in 5-bromouracil, and bound-state character in 5-iodouracil. The present calculations place the σCBr* resonance around 0.7 eV, considerably below the energy inferred from the electron transmission data (1.3 eV). The signature of this anion state, not evident in the measurements, would be obscured by the large background arising from the dipolar interaction, not by the strong signature of the π2*, as presumed. Our results support the π2* resonance as a precursor state to dissociative electron attachment around 1.5 eV in both 5-bromouracil and 5-iodouracil, while the interplay among π1*, σ* and dipole-bound states would be expected close to 0 eV. We also discuss the suppression of the hydrogen elimination channels in these species.


Assuntos
Bromouracila/química , Teoria Quântica , Uracila/análogos & derivados , Íons/química , Uracila/química
18.
J Chem Phys ; 142(19): 194302, 2015 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-26001456

RESUMO

We report differential cross section results from an experimental investigation into the electron impact excitation of a number of the low-lying composite (unresolved) vibrational modes in phenol (C6H5OH). The measurements were carried out at incident electron energies in the range 15-40 eV and for scattered-electron angles in the range 10-90°. The energy resolution of those measurements was typically ∼80 meV. Calculations, using the GAMESS code, were also undertaken with a B3LYP/aug-cc-pVDZ level model chemistry, in order to enable us to assign vibrational modes to the features observed in our energy loss spectra. To the best of our knowledge, the present cross sections are the first to be reported for vibrational excitation of the C6H5OH molecule by electron impact.

19.
J Chem Phys ; 142(10): 104305, 2015 Mar 14.
Artigo em Inglês | MEDLINE | ID: mdl-25770538

RESUMO

We report results from a joint theoretical and experimental investigation into electron scattering from the important organic species phenol (C6H5OH). Specifically, differential cross sections (DCSs) have been measured and calculated for the electron-impact excitation of the electronic states of C6H5OH. The measurements were carried out at energies in the range 15-40 eV, and for scattered-electron angles between 10° and 90°. The energy resolution of those experiments was typically ∼80 meV. Corresponding Schwinger multichannel method with pseudo-potentials calculations, with and without Born-closure, were also performed for a sub-set of the excited electronic-states that were accessed in the measurements. Those calculations were conducted at the static exchange plus polarisation (SEP)-level using a minimum orbital basis for single configuration interaction (MOBSCI) approach. Agreement between the measured and calculated DCSs was typically fair, although to obtain quantitative accord, the theory would need to incorporate even more channels into the MOBSCI.

20.
Phys Chem Chem Phys ; 16(45): 25054-61, 2014 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-25327844

RESUMO

The fragmentation of 2-thiouracil (TU) molecules induced by low energy (<12 eV) electrons is investigated experimentally and theoretically. It is observed that most of the damage is localised at the sulphur site and in particular visible via the production of the thiocyanate, SCN(-), anion. Similar to the canonical nucleobases the loss of the hydrogen atom is a predominant dissociation channel already at the subexcitation energies. The theory shows that for incident electron energies below 3 eV dissociative electron attachment is initiated by shape resonances implicating the π* molecular orbitals. It may also arise from the dipole bound supported state as illustrated by the production of the SCN(-), S(-) and (TU-S)(-) fragments observed close to 0 eV but also the formation of (TU-H)(-) species at 0.7 and 1 eV.


Assuntos
Elétrons , Tiouracila/química , Modelos Moleculares , Conformação Molecular
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