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1.
Zookeys ; 1190: 259-280, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38327265

RESUMO

The millipede family Polydesmidae Leach, 1816 is reviewed in the scope of the Vietnamese fauna. The distribution of the species, Polydesmusvietnamicus Nguyen, 2009 is extended northward to Ha Giang Province. A new cavernicolous polydesmid, Pacidesmustuachuasp. nov., is described from two caves in northwestern Vietnam, representing the first record of the genus from Vietnam. Extensive illustrations and DNA barcodes are provided for both species, a revised key is presented to all 12 species of Pacidesmus Golovatch, 1991, as well as a key to all eight genera of Asian Polydesmidae.

2.
Sci Rep ; 13(1): 17515, 2023 10 16.
Artigo em Inglês | MEDLINE | ID: mdl-37845236

RESUMO

Difficulty falling asleep is one of the typical insomnia symptoms. However, intervention therapies available nowadays, ranging from pharmaceutical to hi-tech tailored solutions, remain ineffective due to their lack of precise real-time sleep tracking, in-time feedback on the therapies, and an ability to keep people asleep during the night. This paper aims to enhance the efficacy of such an intervention by proposing a novel sleep aid system that can sense multiple physiological signals continuously and simultaneously control auditory stimulation to evoke appropriate brain responses for fast sleep promotion. The system, a lightweight, comfortable, and user-friendly headband, employs a comprehensive set of algorithms and dedicated own-designed audio stimuli. Compared to the gold-standard device in 883 sleep studies on 377 subjects, the proposed system achieves (1) a strong correlation (0.89 ± 0.03) between the physiological signals acquired by ours and those from the gold-standard PSG, (2) an 87.8% agreement on automatic sleep scoring with the consensus scored by sleep technicians, and (3) a successful non-pharmacological real-time stimulation to shorten the duration of sleep falling by 24.1 min. Conclusively, our solution exceeds existing ones in promoting fast falling asleep, tracking sleep state accurately, and achieving high social acceptance through a reliable large-scale evaluation.


Assuntos
Distúrbios do Início e da Manutenção do Sono , Dispositivos Eletrônicos Vestíveis , Humanos , Estimulação Acústica , Sono/fisiologia , Polissonografia
3.
Sci Rep ; 13(1): 14789, 2023 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-37684332

RESUMO

Influenza virus is a main cause of acute respiratory tract infections (ARTIs) in children. This is the first double-blind, randomized, and controlled clinical trial examining the efficacy of nasal-spraying probiotic LiveSpo Navax, which contains 5 billion of Bacillus subtilis and B. clausii spores in 5 mL, in supporting treatment of influenza viral infection in pediatric patients. We found that the nasal-spraying Bacillus spores significantly shortened the recovery period and overall treatment by 2 days and increased treatment effectiveness by 58% in resolving all ARTIs' symptoms. At day 2, the concentrations of influenza virus and co-infected bacteria were reduced by 417 and 1152 folds. Additionally, the levels of pro-inflammatory cytokines IL-8, TNF-α, and IL-6 in nasopharyngeal samples were reduced by 1.1, 3.7, and 53.9 folds, respectively. Compared to the standard control group, treatment regimen with LiveSpo Navax demonstrated significantly greater effectiveness, resulting in 26-fold reduction in viral load, 65-fold reduction in bacterial concentration, and 1.1-9.5-fold decrease in cytokine levels. Overall, nasal-spraying Bacillus spores can support the symptomatic treatment of influenza virus-induced ARTIs quickly, efficiently and could be used as a cost-effective supportive treatment for respiratory viral infection in general.Clinical trial registration no: NCT05378022 on 17/05/2022.


Assuntos
Bacillus , Doenças Transmissíveis , Influenza Humana , Infecções por Orthomyxoviridae , Orthomyxoviridae , Probióticos , Infecções Respiratórias , Humanos , Criança , Animais , Influenza Humana/terapia , Carga Viral , Esporos Bacterianos , Infecções Respiratórias/terapia , Citocinas , Sprays Nasais , Neópteros , Probióticos/uso terapêutico
4.
Zookeys ; 1149: 181-195, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37216178

RESUMO

A new millipede species, Paracortinakyrangsp. nov., is described from a cave in Cao Bang Province, northern Vietnam. The new species is diagnosed by having an extraordinarily long projection on the head of males, reduced eyes, a gonocoxite with two processes, a long and slender gonotelopodite with two long, clavate prefemoroidal processes densely covered with long macrosetae apically, and with a distal, reverse, short spine on mesal side, and a rather sinuous distal part of the telopodite. This is the third species of the genus that is known from Vietnam. A brief comparison of some secondary sexual characters is made.

5.
Sci Rep ; 12(1): 12402, 2022 07 20.
Artigo em Inglês | MEDLINE | ID: mdl-35858943

RESUMO

Respiratory syncytial virus (RSV) is a leading cause of Acute Respiratory Tract Infections (ARTIs) in young children. However, there is currently no vaccine or treatment available for children. Here, we demonstrated that nasal-spraying probiotics containing 5 billion of Bacillus spores (LiveSpo Navax) is an effective symptomatic treatment in a 6-day randomized controlled clinical study for RSV-infected children (n = 40-46/group). Navax treatment resulted in 1-day faster recovery-time and 10-50% better efficacy in relieving ARTI symptoms. At day 3, RSV load and level of pro-inflammatory cytokines in nasopharyngeal samples was reduced by 630 folds and 2.7-12.7 folds respectively. This showed 53-fold and 1.8-3.6-fold more effective than those in the control-standard of care-group. In summary, nasal-spraying Bacillus spores can rapidly and effectively relieve symptoms of RSV-induced ARTIs while exhibit strong impacts in reducing viral load and inflammation. Our nasal-spraying probiotics may provide a basis for simple-to-use, low-cost, and effective treatment against viral infection in general.


Assuntos
Bacillus , Infecções por Vírus Respiratório Sincicial , Vírus Sincicial Respiratório Humano , Infecções Respiratórias , Criança , Pré-Escolar , Humanos , Sprays Nasais , Infecções Respiratórias/terapia , Esporos Bacterianos
6.
Clin Imaging ; 88: 45-52, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-35623119

RESUMO

Interstitial lung diseases (ILDs) may present a diagnostic dilemma due to their many classifications and overlapping imaging findings. In this review, we present an algorithmic approach for assessing ILDs based on identifying and understanding key imaging features to aid in narrowing a differential diagnosis or reaching a specific diagnosis. We use the recently introduced Interstitial Lung Disease Reporting And Data System (ILD-RADS) as a framework for our discussion.


Assuntos
Doenças Pulmonares Intersticiais , Diagnóstico Diferencial , Humanos , Pulmão/diagnóstico por imagem , Doenças Pulmonares Intersticiais/diagnóstico por imagem
7.
J Fluoresc ; 32(2): 569-582, 2022 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-35006485

RESUMO

Fluorescently labelling proteins such as insulin have wide ranging applications in a pharmaceutical research and drug delivery. Human insulin (Actrapid®) was labelled with fluorescein isothiocyanate (FITC) and the synthesised conjugate identified using reverse phase high performance liquid chromatography (RP-HPLC) on a C18 column and a gradient method with mobile phase A containing 0.1% trifluoroacetic acid (TFA) in Millipore water and mobile phase B containing 90% Acetonitrile, 10% Millipore water and 0.1% TFA. Syntheses were carried out at varying reaction times between 4 and 20 h. Mono-labelled FITC-insulin conjugate was successfully synthesised with labelling at the B1 position on the insulin chain using a molar ratio of 2:1 (FITC:insulin) at a reaction time of 18 h and confirmed by electrospray mass spectroscopy. Reactions were studied across a pH range of 7-9.8 and the quantities switch from mono-labelled to di-labelled FITC-insulin conjugates at a reaction time of 2 h (2:1 molar ratio) at pH > 8. The conjugates isolated from the studies had biological activities in comparison to native insulin of 99.5% monoB1, 78% monoA1, 51% diA1B1 and 0.06% triA1B1B29 in HUVEC cells by examining AKT phosphorylation levels. MonoB1 FITC-insulin conjugate was also compared to native insulin by examining cell surface GLUT4 in C2C12 skeletal muscle cells. No significant difference in the cellular response was observed for monoB1 produced in-house compared to native insulin. Therefore mono-labelled FITC-insulin at the B1 position showed similar biological activity as native insulin and can potentially be used for future biomedical applications.


Assuntos
Cromatografia Líquida de Alta Pressão/métodos , Cromatografia de Fase Reversa/métodos , Fluoresceína-5-Isotiocianato/análogos & derivados , Insulina/análogos & derivados , Western Blotting , Células Cultivadas , Fluoresceína-5-Isotiocianato/síntese química , Fluoresceína-5-Isotiocianato/isolamento & purificação , Fluorescência , Transportador de Glucose Tipo 4/metabolismo , Humanos , Concentração de Íons de Hidrogênio , Insulina/síntese química , Insulina/isolamento & purificação , Insulina/farmacologia , Espectrometria de Massas , Células Musculares/efeitos dos fármacos , Células Musculares/metabolismo , Músculo Esquelético/citologia , Fosfatos , Fosforilação , Proteínas Proto-Oncogênicas c-akt/metabolismo , Transdução de Sinais
8.
Nat Commun ; 13(1): 169, 2022 01 10.
Artigo em Inglês | MEDLINE | ID: mdl-35013281

RESUMO

Multiplexed mRNA profiling in the spatial context provides new information enabling basic research and clinical applications. Unfortunately, existing spatial transcriptomics methods are limited due to either low multiplexing or complexity. Here, we introduce a spatialomics technology, termed Multi Omic Single-scan Assay with Integrated Combinatorial Analysis (MOSAICA), that integrates in situ labeling of mRNA and protein markers in cells or tissues with combinatorial fluorescence spectral and lifetime encoded probes, spectral and time-resolved fluorescence imaging, and machine learning-based decoding. We demonstrate MOSAICA's multiplexing scalability in detecting 10-plex targets in fixed colorectal cancer cells using combinatorial labeling of five fluorophores with facile error-detection and removal of autofluorescence. MOSAICA's analysis is strongly correlated with sequencing data (Pearson's r = 0.96) and was further benchmarked using RNAscopeTM and LGC StellarisTM. We further apply MOSAICA for multiplexed analysis of clinical melanoma Formalin-Fixed Paraffin-Embedded (FFPE) tissues. We finally demonstrate simultaneous co-detection of protein and mRNA in cancer cells.


Assuntos
Diagnóstico por Imagem/métodos , Melanoma/genética , RNA Mensageiro/genética , Neoplasias Cutâneas/genética , Transcriptoma , Proteína BRCA1/genética , Proteína BRCA1/metabolismo , Benchmarking , Linhagem Celular Tumoral , Colo/metabolismo , Colo/patologia , RNA Polimerases Dirigidas por DNA/genética , RNA Polimerases Dirigidas por DNA/metabolismo , Diagnóstico por Imagem/instrumentação , Corantes Fluorescentes/química , Perfilação da Expressão Gênica , Regulação da Expressão Gênica , Células HEK293 , Humanos , Antígeno Ki-67/genética , Antígeno Ki-67/metabolismo , Melanoma/diagnóstico por imagem , Melanoma/metabolismo , Melanoma/patologia , Microscopia de Fluorescência/instrumentação , Microscopia de Fluorescência/métodos , Coativador 3 de Receptor Nuclear/genética , Coativador 3 de Receptor Nuclear/metabolismo , RNA Mensageiro/metabolismo , Neoplasias Cutâneas/diagnóstico por imagem , Neoplasias Cutâneas/metabolismo , Neoplasias Cutâneas/patologia , Análise Espacial , Serina-Treonina Quinases TOR/genética , Serina-Treonina Quinases TOR/metabolismo
9.
PLOS Digit Health ; 1(6): e0000061, 2022 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36812552

RESUMO

The Earable device is a behind-the-ear wearable originally developed to measure cognitive function. Since Earable measures electroencephalography (EEG), electromyography (EMG), and electrooculography (EOG), it may also have the potential to objectively quantify facial muscle and eye movement activities relevant in the assessment of neuromuscular disorders. As an initial step to developing a digital assessment in neuromuscular disorders, a pilot study was conducted to determine whether the Earable device could be utilized to objectively measure facial muscle and eye movements intended to be representative of Performance Outcome Assessments, (PerfOs) with tasks designed to model clinical PerfOs, referred to as mock-PerfO activities. The specific aims of this study were: To determine whether the Earable raw EMG, EOG, and EEG signals could be processed to extract features describing these waveforms; To determine Earable feature data quality, test re-test reliability, and statistical properties; To determine whether features derived from Earable could be used to determine the difference between various facial muscle and eye movement activities; and, To determine what features and feature types are important for mock-PerfO activity level classification. A total of N = 10 healthy volunteers participated in the study. Each study participant performed 16 mock-PerfOs activities, including talking, chewing, swallowing, eye closure, gazing in different directions, puffing cheeks, chewing an apple, and making various facial expressions. Each activity was repeated four times in the morning and four times at night. A total of 161 summary features were extracted from the EEG, EMG, and EOG bio-sensor data. Feature vectors were used as input to machine learning models to classify the mock-PerfO activities, and model performance was evaluated on a held-out test set. Additionally, a convolutional neural network (CNN) was used to classify low-level representations of the raw bio-sensor data for each task, and model performance was correspondingly evaluated and compared directly to feature classification performance. The model's prediction accuracy on the Earable device's classification ability was quantitatively assessed. Study results indicate that Earable can potentially quantify different aspects of facial and eye movements and may be used to differentiate mock-PerfO activities. Specially, Earable was found to differentiate talking, chewing, and swallowing tasks from other tasks with observed F1 scores >0.9. While EMG features contribute to classification accuracy for all tasks, EOG features are important for classifying gaze tasks. Finally, we found that analysis with summary features outperformed a CNN for activity classification. We believe Earable may be used to measure cranial muscle activity relevant for neuromuscular disorder assessment. Classification performance of mock-PerfO activities with summary features enables a strategy for detecting disease-specific signals relative to controls, as well as the monitoring of intra-subject treatment responses. Further testing is needed to evaluate the Earable device in clinical populations and clinical development settings.

10.
J Nematol ; 532021.
Artigo em Inglês | MEDLINE | ID: mdl-34458853

RESUMO

Two new species of Parkellus (Jairajpuri et al., 2001) from Vietnam and a population of Parkellus zschokkei (Ahmad and Jairajpuri, 2010; Menzel, 1913) from Ukraine are described, illustrated and their phylogenetic position among the Mononchida is presented. The molecular data (18S and 28S rDNA) are given for the three investigated species - first time for the genus Parkellus. Parkellus hagiangensis sp. nov. is characterized by a medium-sized buccal cavity, posterior position of the dorsal tooth located below the beginning of the pharynx, males having the ventromedian cuticular pores above and below the excretory pore, short spicules with conical proximal part; females with very faint pars refringens vaginae and small teardrop-shaped pieces, short pars distalis vaginae, the presence of small ventromedian vulval papillae. Parkellus tuyenquangensis sp. nov. is characterized by a medium-sized buccal cavity, posterior position of the dorsal tooth located above the beginning of the pharynx, males having the ventromedian cuticular pores above and below the excretory pore, medium-sized spicules with a cylindrical proximal part, very short lateral guiding pieces, females with very strongly sclerotized pars refringens vaginae, medium size teardrop-shaped pieces, short pars distalis vaginae thickened at the junction with pars refringens vaginae. The newly described species are morphologically most similar to P. parkus and P. zschokkei. An identification key to Parkellus species is presented.

11.
J Nematol ; 532021.
Artigo em Inglês | MEDLINE | ID: mdl-34337421

RESUMO

The new species Iotonchus lotilabiatus n. sp. from Bat Xat Nature reserve in Lao Cai Province, Vietnam is described and the molecular data (18S and 28S rDNA) are given. Females of the new species are characterized by large body size (L = 3.8-5.2 mm); barrel shaped buccal cavity of large size (41-54×70-89 µm) with dorsal tooth apex located 22 to 23.5% of buccal cavity length from its base; reproductive system didelphic-amphidelphic, vagina long, corresponding almost half of body width at the vulva with distinct parrefringens vaginae, sclerotized and triangulated pieces in optical section; tail long filiform, ventrally arcuate, with three small caudal glands in tandem and prominent terminal spinneret. Males with spicules 119 to 148 µm in length, and slender, slightly curved gubernaculum, 39 to 44 µm long and with 13 to 14 ventromedian supplements. The new species Iotonchus lotilabiatus n. sp. is closest to I. miamaensis (Khan and Araki, 2002), but differs by having larger size of body length and buccal cavity, lower position of dorsal tooth apex; longer female tail with lower c but higher c' ratios and the presence of advulval cuticular structures.

12.
Zootaxa ; 4985(2): 253260, 2021 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-34186654

RESUMO

Truxonchus quangi sp. n. is described and illustrated from Vietnam. Females of the new species are characterized by large body size (L = 4.8-5.8 mm); barrel shaped buccal cavity of large size (105-113 x 66-73 µm) with one dorsal tooth and two subventral teeth posteriorly directed, of equal shape, size and apex position; dorsal tooth apex located 36-39% of buccal cavity length from its base; reproductive system didelphic-amphidelphic, vagina long, 39-45% of corresponding body width, with distinct par refringens vaginae, sclerotized pieces rounded in optical section; tail long, filiform, ventrally arcuate, with three small caudal glands in tandem and prominent subventral spinneret. The new species is close to T. dolichurus but differs by the larger buccal cavity, more anterior position of the dorsal tooth apex, more anterior vulval position and presence of advulval pores.


Assuntos
Helmintos/anatomia & histologia , Helmintos/classificação , Animais , Tamanho Corporal , Quirópteros , Feminino , Genitália , Vietnã
13.
Zootaxa ; 4861(1): zootaxa.4861.1.9, 2020 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-33055874

RESUMO

Actus hagiangensis sp. nov. is described and illustrated from Vietnam. Females of the new species are characterized by medium body size (L = 1.1-1.4 mm), barrel shaped buccal cavity of medium size (26-31 x 13-15 µm) with dorsal tooth apex located 75-81% of buccal cavity length from base and two longitudinal subventral rows, each with four rasp-like denticles; reproductive system didelphic-amphidelphic, vagina short with distinct par refringens vaginae, sclerotized pieces globular in optical section; tail elongate-conoid, slightly ventrally arcuate, with three caudal glands and prominent spinneret. Male with spicules 46 µm in length, and slender, slightly curved gubernaculum, 12 µm long, without accessory piece. This is the first report of a male specimen of the genus Actus. The new species is close to A. salvadoricus but differs by the larger buccal cavity, more anterior position of the dorsal tooth apex and more rounded vaginal sclerotized pieces.


Assuntos
Helmintos , Nematoides , Animais , Tamanho Corporal , Feminino , Genitália , Masculino , Vietnã
14.
Front Neurol ; 11: 701, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32849189

RESUMO

One-fourths of the patients have medication-resistant seizures and require seizure detection and treatment continuously to cope with sudden seizures. Seizures can be detected by monitoring the brain and muscle activities, heart rate, oxygen level, artificial sounds, or visual signatures through EEG, EMG, ECG, motion, or audio/video recording on the human head and body. In this article, we first discuss recent advances in seizure sensing, signal processing, time- or frequency-domain analysis, and classification algorithms to detect and classify seizure stages. Then, we show a strong potential of applying recent advancements in non-invasive brain stimulation technology to treat seizures. In particular, we explain the fundamentals of brain stimulation approaches, including (1) transcranial magnetic stimulation (TMS), (2) transcranial direct current stimulation (tDCS), (3) transcranial focused ultrasound stimulation (tFUS), and how to use them to treat seizures. Through this review, we intend to provide a broad view of both recent seizure diagnoses and treatments. Such knowledge would help fresh and experienced researchers to capture the advancements in sensing, detection, classification, and treatment seizures. Last but not least, we provide potential research directions that would attract seizure researchers/engineers in the field.

15.
Sci Rep ; 10(1): 12458, 2020 07 27.
Artigo em Inglês | MEDLINE | ID: mdl-32719382

RESUMO

Rapidly isolating rare targets from larger, clinically relevant fluid volumes remains an unresolved problem in biomedicine and diagnosis. Here, we describe how 3D particle sorting can enrich targets at ultralow concentrations over 100-fold within minutes not possible with conventional approaches. Current clinical devices based on biochemical extraction and microfluidic solutions typically require high concentrations and/or can only process sub-milliliter volumes in time. In a proof-of-concept application, we isolated bacteria from whole blood as demanded for rapid sepsis diagnosis where minimal numbers of bacteria need to be found in a 1-10 mL blood sample. After sample encapsulation in droplets and target enrichment with the 3D particle sorter within a few minutes, downstream analyses were able to identify bacteria and test for antibiotic susceptibility, information which is critical for successful treatment of bloodstream infections.


Assuntos
Bactérias/isolamento & purificação , Sangue/microbiologia , Microfluídica/métodos , Sepse/sangue , Sepse/microbiologia , Humanos , Microfluídica/instrumentação , Sepse/diagnóstico
16.
Brain Behav Immun ; 84: 200-208, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31812776

RESUMO

Autism spectrum disorder (ASD) is an important health issue and affects 1 in 59 children in the US. Prior studies determined that maternal autoantibody related (MAR) autism is thought to be associated with ~23% of ASD cases. We previously identified seven MAR-specific autoantigens including CRMP1, CRMP2, GDA, LDHA, LDHB, STIP1, and YBX1. We subsequently described the epitope peptide sequences recognized by maternal autoantibodies for each of the seven ASD-specific autoantigens. The aim of the current study was to expand upon our previous work and identify additional antigens recognized by the ASD-specific maternal autoantibodies, as well as to map the unique ASD-specific epitopes using microarray technology. Fetal Rhesus macaque brain tissues were separated by molecular weight and a fraction containing bands between 37 and 45 kDa was analyzed using 2-D gel electrophoresis, followed by peptide mass mapping using MALDI-TOF MS and TOF/TOF tandem MS/MS. Using this methodology, Neuron specific enolase (NSE) was identified as a target autoantigen and selected for epitope mapping. The full NSE sequence was translated into 15-mer peptides with an overlap of 14 amino acids onto microarray slides and probed with maternal plasma from mothers with an ASD child and from mothers with a Typically Developing child (TD) (ASD = 27 and TD = 21). The resulting data were analyzed by T-test. We found 16 ASD-specific NSE-peptide sequences for which four sequences were statistically significant (p < 0.05) using both the t-test and SAM t-test: DVAASEFYRDGKYDL (p = 0.047; SAM score 1.49), IEDPFDQDDWAAWSK (p = 0.049; SAM score 1.49), ERLAKYNQLMRIEEE (p = 0.045; SAM score 1.57), and RLAKYNQLMRIEEEL (p = 0.017; SAM score 1.82). We further identified 5 sequences that were recognized by both ASD and TD antibodies suggesting a large immunodominant epitope (DYPVVSIEDPFDQDDWAAW). While maternal autoantibodies against the NSE protein are present both in mothers with ASD and mothers of TD children, there are several ASD-specific epitopes that can potentially be used as MAR ASD biomarkers. Further, studies including analysis of NSE as a target protein in combination with the previously identified MAR ASD autoantigens are currently underway.


Assuntos
Transtorno do Espectro Autista , Biomarcadores , Peptídeos , Fosfopiruvato Hidratase , Animais , Transtorno do Espectro Autista/sangue , Transtorno do Espectro Autista/diagnóstico , Autoanticorpos , Autoantígenos/análise , Biomarcadores/sangue , Criança , Mapeamento de Epitopos , Feminino , Humanos , Macaca mulatta , Peptídeos/análise , Fosfopiruvato Hidratase/sangue , Fosfopiruvato Hidratase/imunologia , Espectrometria de Massas em Tandem
17.
Lab Chip ; 20(3): 477-489, 2020 02 07.
Artigo em Inglês | MEDLINE | ID: mdl-31872202

RESUMO

Sepsis due to antimicrobial resistant pathogens is a major health problem worldwide. The inability to rapidly detect and thus treat bacteria with appropriate agents in the early stages of infections leads to excess morbidity, mortality, and healthcare costs. Here we report a rapid diagnostic platform that integrates a novel one-step blood droplet digital PCR assay and a high throughput 3D particle counter system with potential to perform bacterial identification and antibiotic susceptibility profiling directly from whole blood specimens, without requiring culture and sample processing steps. Using CTX-M-9 family ESBLs as a model system, we demonstrated that our technology can simultaneously achieve unprecedented high sensitivity (10 CFU per ml) and rapid sample-to-answer assay time (one hour). In head-to-head studies, by contrast, real time PCR and BioRad ddPCR only exhibited a limit of detection of 1000 CFU per ml and 50-100 CFU per ml, respectively. In a blinded test inoculating clinical isolates into whole blood, we demonstrated 100% sensitivity and specificity in identifying pathogens carrying a particular resistance gene. We further demonstrated that our technology can be broadly applicable for targeted detection of a wide range of antibiotic resistant genes found in both Gram-positive (vanA, nuc, and mecA) and Gram-negative bacteria, including ESBLs (blaCTX-M-1 and blaCTX-M-2 families) and CREs (blaOXA-48 and blaKPC), as well as bacterial speciation (E. coli and Klebsiella spp.) and pan-bacterial detection, without requiring blood culture or sample processing. Our rapid diagnostic technology holds great potential in directing early, appropriate therapy and improved antibiotic stewardship in combating bloodstream infections and antibiotic resistance.


Assuntos
Antibacterianos/farmacologia , Enterobacteriaceae/efeitos dos fármacos , Staphylococcus aureus Resistente à Meticilina/efeitos dos fármacos , Reação em Cadeia da Polimerase , Enterococos Resistentes à Vancomicina/efeitos dos fármacos , Enterobacteriaceae/isolamento & purificação , Humanos , Dispositivos Lab-On-A-Chip , Staphylococcus aureus Resistente à Meticilina/isolamento & purificação , Técnicas Analíticas Microfluídicas/instrumentação , Tamanho da Partícula , Propriedades de Superfície , Enterococos Resistentes à Vancomicina/isolamento & purificação
18.
J Infect ; 79(2): 115-122, 2019 08.
Artigo em Inglês | MEDLINE | ID: mdl-31125639

RESUMO

BACKGROUND: Carbapenem-resistant Enterobacteriaceae (CRE) is an increasing problem worldwide, but particularly problematic in low- and middle-income countries (LMIC) due to limitations of resources for surveillance of CRE and infection prevention and control (IPC). METHODS: A point prevalence survey (PPS) with screening for colonisation with CRE was conducted on 2233 patients admitted to neonatal, paediatric and adult care at 12 Vietnamese hospitals located in northern, central and southern Vietnam during 2017 and 2018. CRE colonisation was determined by culturing of faecal specimens on selective agar for CRE. Risk factors for CRE colonisation were evaluated. A CRE admission and discharge screening sub-study was conducted among one of the most vulnerable patient groups; infants treated at an 80-bed Neonatal ICU from March throughout June 2017 to assess CRE acquisition, hospital-acquired infection (HAI) and treatment outcome. RESULTS: A total of 1165 (52%) patients were colonised with CRE, most commonly Klebsiella pneumoniae (n = 805), Escherichia coli (n = 682) and Enterobacter spp. (n = 61). Duration of hospital stay, HAI and treatment with a carbapenem were independent risk factors for CRE colonisation. The PPS showed that the prevalence of CRE colonisation increased on average 4.2% per day and mean CRE colonisation rates increased from 13% on the day of admission to 89% at day 15 of hospital stay. At the NICU, CRE colonisation increased from 32% at admission to 87% at discharge, mortality was significantly associated (OR 5·5, P < 0·01) with CRE colonisation and HAI on admission. CONCLUSION: These data indicate that there is an epidemic spread of CRE in Vietnamese hospitals with rapid transmission to hospitalised patients.


Assuntos
Enterobacteriáceas Resistentes a Carbapenêmicos , Portador Sadio/epidemiologia , Infecção Hospitalar/epidemiologia , Infecções por Enterobacteriaceae/epidemiologia , Hospitalização , Efeitos Psicossociais da Doença , Infecção Hospitalar/microbiologia , Infecção Hospitalar/mortalidade , Infecção Hospitalar/transmissão , Infecções por Enterobacteriaceae/microbiologia , Infecções por Enterobacteriaceae/mortalidade , Infecções por Enterobacteriaceae/transmissão , Feminino , Humanos , Masculino , Prevalência , Prognóstico , Vigilância em Saúde Pública , Fatores de Risco , Vietnã/epidemiologia
19.
Pediatr Pulmonol ; 54(8): 1149-1155, 2019 08.
Artigo em Inglês | MEDLINE | ID: mdl-31006993

RESUMO

OBJECTIVES: Manual clinical scoring systems are the current standard used for acute asthma clinical care pathways. No automated system exists that assesses disease severity, time course, and treatment impact in pediatric acute severe asthma exacerbations. WORKING HYPOTHESIS: machine learning applied to continuous vital sign data could provide a novel pediatric-automated asthma respiratory score (pARS) by using the manual pediatric asthma score (PAS) as the clinical care standard. METHODS: Continuous vital sign monitoring data (heart rate, respiratory rate, and pulse oximetry) were merged with the health record data including a provider-determined PAS in children between 2 and 18 years of age admitted to the pediatric intensive care unit (PICU) for status asthmaticus. A cascaded artificial neural network (ANN) was applied to create an automated respiratory score and validated by two approaches. The ANN was compared with the Normal and Poisson regression models. RESULTS: Out of an initial group of 186 patients, 128 patients met inclusion criteria. Merging physiologic data with clinical data yielded >37 000 data points for model training. The pARS score had good predictive accuracy, with 80% of the pARS values within ±2 points of the provider-determined PAS, especially over the mid-range of PASs (6-9). The Poisson and Normal distribution regressions yielded a smaller overall median absolute error. CONCLUSIONS: The pARS reproduced the manually recorded PAS. Once validated and studied prospectively as a tool for research and for physician decision support, this methodology can be implemented in the PICU to objectively guide treatment decisions.


Assuntos
Asma/diagnóstico , Aprendizado de Máquina , Criança , Pré-Escolar , Feminino , Frequência Cardíaca , Humanos , Masculino , Oximetria , Taxa Respiratória , Índice de Gravidade de Doença
20.
Biomed Opt Express ; 10(3): 1223-1233, 2019 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-30891341

RESUMO

Fluorescence-based single particle counting devices have become very powerful tools for human health-related applications such as the detection of blood-borne pathogens. Instead of passing the sample fluid through a thin tube or microfluidic chip, as it is commonly practiced in flow cytometers and sorter devices, single particle counters scan the fluid volume by rotation and translation of the sample container. Hence, single particle counters are not limited by the fluid flow friction and can scan a large volume in a short timeframe while maintaining high sensitivity. A single particle can be detected in a milliliter of the fluid sample within minutes, and diagnostics are being developed using this principle. Until now, signal detection with particle counters has been based on signal intensity and signal separation into multiple wavelength bands coupled with multiple detectors, which limits the number of species that can be resolved. In this paper, we applied fluorescence lifetime detection to single particle counting to increase specificity and enable multiplexing with a single detector. We demonstrate how this principle can be used for diagnostic assays based on fluorescence quenching.

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