Size-specific variations in the length-weight relationship and relative condition factor of Hilsa shad (Tenualosa ilisha) across its habitats in Bangladesh.

The length-weight relationship (LWR) and relative condition factor are widely used as the most important biological parameters to infer the growth pattern and well-being of fishes. The aim of our study was to investigate the growth parameters of the LWR in different growth phases of Hilsa (Tenualosa ilisha), a flagship species of Bangladesh, and compare its relative condition factors across its major habitats. Fish from various rivers in Bangladesh and the Bay of Bengal were sampled, their length-weight growth parameters were measured and subjected to statistical analysis with pooled data from other studies. An isometric growth pattern in Hilsa was predominantly found in the size classes of 25 ≤ TL (total length) < 30, 30 ≤ TL < 35, and TL ≥ 40. However, the size class TL < 25 showed negative allometric growth with the value of the exponent (b, also known as growth coefficient) between 2.797 and 2.833. The highest weight-growth of Hilsa was within the size class of 35 ≤ TL < 40, with exponent values of 3.271-3.381 (positive allometric growth) across habitats. Our results revealed that the exponent value varied significantly (P < 0.05) between different size classes of Hilsa except between 30 ≤ TL < 35 and TL ≥ 40; however, no such significant differences in the exponent values were found across habitats. The Akaike Information Criterion value was lowest for the size-specific length-weight regression model of Hilsa, indicating it was the best-fit model compared to the habitat-specific and pooled sample models. The relative condition factor of Hilsa by habitat was found in the order of Meghna > Bay of Bengal > Andharmanik > Biskhali > Tetulia > Padma. Additionally, the relative physiological well-being of Hilsa from the river Padma and Tetulia was poor compared to that of other habitats. A more in-depth analysis is required to determine the factors that can influence Hilsa's growth and well-being in relation to habitat quality. The present findings have significant relevance for fisheries biologists and managers in understanding and interpreting Hilsa's ecology, relative well-being of populations of same or contrasting habitats, demographic assessment, and for better management of Hilsa in the future.

Assessing Trace Elements Bioaccumulation in Coastal River Fish and Shellfish: Implications for Human Health and Risk Evaluation.

The presence of heavy metal contaminants in fish and shellfish in aquatic environments poses a risk to human health due to trophic transfer. This study determined the levels of various trace elements (Fe, As, Cr, Zn, Cu, Ni, Pb, and Cd) in the muscles, gills, and liver of hilsa (Tenualosa ilisha) and prawn (Macrobrachium rosenbergii) samples obtained from the Tetulia River, Bangladesh. The results showed that the level of trace elements in different body parts differed significantly (P < 0.05) between species, displayed below recommended threshold levels. The cumulative low to higher hierarchic concentration of the trace elements was as follows: Fe > Zn > Cu > Cr > Ni > Pb > As > Cd. Hilsa had significantly (P < 0.05) higher bioaccumulated trace elements compared to prawn. With the exception of Ni and Cd, the estimated daily intakes (EDI) for both adults and children were below the recommended daily allowance (RDA), which exhibits that other trace elements do not cause harm to human health. Furthermore, the hazard index (HI) and total hazard quotient (THQ) were also found to be within acceptable limits, taking into account the higher vulnerability of children to toxicity compared to adults. Notably, the HI suggested that children were approximately four times more susceptible to both carcinogenic and non-carcinogenic effects compared to adults. Ultimately, the levels of carcinogenic risk were deemed acceptable, despite the estimated values suggesting susceptibility to adverse effects in both adults and children. This study concluded that fish and shellfish may not pose a health risk to consumers, highlighting the importance of further monitoring of trace elements in the catchment area.

A First Record on Microplastic Ingestion by Tropical Estuarine Copepods of Bangladesh.

Microplastics (MPs) pollution is a profound problem around the world yet it's study on the effect on zooplankton including copepods are very limited. The study was conducted between January 2021 and January 2022 in the Lower Meghna Estuary to investigate MPs ingestion in two different family of copepod: Calanoid and Cyclopoid. A method of acid digestion along with Scanning Electron Microscope (SEM) was used to identify MPs ingested by copepods from the conducted area. However, three types of MPs namely fiber, fragment and foam were extracted from this copepod biomass. Fibers represent highest (> 50%) of the ingested MPs from both group of copepod that exceed fragments and foams in all sampling stations. The overall ingestion rate of Calanoid was found higher (0.084 ± 0.002 particles/individual) compared to the Cyclopoid group (0.077 ± 0.001 particles/individual). The results of the study have effectively illustrated that copepod, obtained from multiple sampling sites within the Lower Meghna Estuary, display a propensity to ingest MPs and subsequently endangering the food security of seafood industry.

Microbiome pattern and diversity of an anadromous fish, hilsa shad (Tenualosa ilisha).

BACKGROUND: The host-microbe interactions are complex, dynamic and context-dependent. In this regard, migratory fish species like hilsa shad (Tenualosa ilisha), which migrates from seawater to freshwater for spawning, provides a unique system for investigating the microbiome under an additional change in fish's habitat. This work was undertaken to detect taxonomic variation of microbiome and their function in the migration of hilsa. METHODS AND RESULTS: The study employed 16S rRNA amplicon-based metagenomic analysis to scrutinize bacterial diversity in hilsa gut, skin mucus and water. Thus, a total of 284 operational taxonomic units (OTUs), 9 phyla, 35 orders and 121 genera were identified in all samples. More than 60% of the identified bacteria were Proteobacteria with modest abundance (> 5%) of Firmicutes, Bacteroidetes and Actinobacteria. Leucobacter in gut and Serratia in skin mucus were the core bacterial genera, while Acinetobacter, Pseudomonas and Psychrobacter exhibited differential compositions in gut, skin mucus and water. CONCLUSIONS: Representative fresh-, brackish- and seawater samples of hilsa habitats were primarily composed of Vibrio, Serratia and Psychrobacter, and their diversity in seawater was significantly higher (P < 0.05) than freshwater. Overall, salinity and water microbiota had an influence on the microbial composition of hilsa shad, contributing to host metabolism and adaptation processes. This pioneer exploration of hilsa gut and skin mucus bacteria across habitats will advance our insights into microbiome assembly in migratory fish populations.

Diversity analysis of hilsa (Tenualosa ilisha) gut microbiota using culture-dependent and culture-independent approaches.

AIMS: The bacterial communities associated with the gastrointestinal (GI) tract are primarily involved in digestion, physiology, and the immune response against pathogenic bacteria for the overall development and health of the host. Hilsa shad (Tenualosa ilisha), a tropical anadromous fish, found predominantly in Bangladesh and India, has so far been poorly investigated for its gut bacterial communities. In this study, both culture-based and metagenomic approaches were used to detect intestinal isolates of hilsa, captured from both freshwater and seawater to investigate the community structure of intestinal microbiota. METHODS AND RESULTS: Culture-dependent approach allowed to isolate a total of 23 distinct bacterial species comprising 16 Gram-negative, and 7 Gram-positive isolates, where Proteobacteria and Firmicutes were identified as the two most dominant phyla. While metagenomic approach explored a wide range of important GI bacteria, primarily dominated by Proteobacteria, Firmicutes, and Bacteroidetes, with Proteobacteria and Firmicutes, being the most abundant in freshwater and seawater samples, respectively. CONCLUSIONS: A combination of these approaches provided the differential GI-associated bacterial diversity in freshwater and seawater hilsa with the prediction of overall functional potential. IMPACT STATEMENT: The study explored the diversity of gut microbiota in hilsa, one of the most preferred nutritious dietary fish, captured from freshwater and seawater habitats, which may encourage to comprehend the composition of the gut microbiome in relation to the migratory behavior and polyunsaturated fatty acid profile of anadromous fish in general.

Gut and flesh microbiome sequencing of the Bangladesh national fish hilsa (Tenualosa ilisha).

The gut and flesh microbiome of the national fish of Bangladesh, Tenualosa ilisha, were analyzed using 16S rRNA gene sequencing. Our findings revealed a significant microbial disparity between sample categories and the habitat of hilsa fish, which will serve as a valuable foundation for further comprehensive studies on the hilsa microbiome.

Estimating peak breeding season, size at first maturity and variation in fecundity and egg-size at different sizes of Hilsa (Tenualosa ilisha).

Hilsa shad, Tenualosa ilisha, has recently gained momentum due to its taste, nutrition and demand. Imposing ban at peak breeding and setting up a minimum capture size are two of the most effective tools for conservation and management of any fish species. Although, Bangladesh government has been imposing ban on a particular time and set the minimum legal size, there is still contradictory information on these two issues. That is why, a study was carried out to determine peak season of breeding and first maturity of Hilsa collected across the natural habitats in Bangladesh. Variation in fecundity and egg-size at different sizes were also investigated. Peak breeding season was identified observing gonadosomatic index of female Hilsa all the year round. First maturity was estimated with Probit analysis. Based on the gonadosomatic index of gravid females, peak breeding season was identified as late October to early November in this study. However, another minor peak was found in February-March. The highest GSI value (12.1) was observed in October-November, which indicates the peak time of spawning. The size at maturity (M50) of female Hilsa was estimated as 31 cm total length. A significant variation was observed in egg sizes between the left and right lobes of the fish (t (24) = 2.42, p = 0.02), and between the parts of the same lobe (p = 0.03). However, fish length and weight had no effect on egg size(for egg-size vs. fish length, r = -0.009, p = 0.966; and for egg size vs. body weight, r = 0.132 and p = 0.530). The average egg count from left lobe and right lobe were recorded as 0.375 ± 0.16 million, 0.371 ± 0.17 million. Total fecundity was counted as 0.745 ± 0.33 million. A significant positive correlation was noticed between length, weight, and total fecundity (r = 0.7 for total fecundity vs. body weight; r = 0.6 for of total fecundity vs. length). No significant variation was observed in fecundity between the left and right lobe (p = 0.6) and among three parts of a lobe (p = 0.3). The size of eggs varied between two lobes and among different parts of a lobe. The eggs from middle part were bigger in size than the other parts. The findings of our study will help conserve and manage the natural population of Hilsa (T. ilisha) in Bangladesh and contribute to the wider scientific community.

Role of tide and lunar phases on the migration pattern of juvenile Hilsa shad (Tenualosa ilisha) within a meso-macrotidal estuary.

Tide and lunar phases often influence the behaviour and life cycle of different fishes, especially migratory species. In the Hooghly River estuary, Hilsa shad is an anadromous fish species that migrates from the adjacent sea to the estuary and rivers for spawning. After spawning, the juveniles remain in the rivers and estuary for few months then start their downstream migration towards the adjacent sea. However, the pattern of their downstream migration has not been studied in detail so far. This study investigates the role of tide and lunar phases on the juvenile Hilsa shad migration pattern. In this study, we have estimated the rate of juveniles migrating through the river channel (no. m-2  h-1 ) during high tide and low tide in all of the lunar phases. The number of juvenile Hilsa shad fishes is found to be much higher during low tides in most of the observations and there is a significant difference (t = 11.904, P < 0.001) between the high tide and low tide catches in the entire study region. Among the eight lunar phases, the number of juveniles is also observed to be higher during the new moon and full moon, and there is also a significant difference in juvenile catch among the lunar phases (F = 64.372, P < 0.001) in the entire stretch of the study area. These observations enabled us to develop a plausible mechanism of the downstream migration of Hilsa shad juveniles.

Biochemical properties and shelf life of value-added fish cube and powder developed from hilsa shad (Tenualosa ilisha).

Hilsa shad (Tenualosa ilisha) is one of the most popular and tastiest fishes in Southeast Asia because of its unique soft texture, mouth-watering flavor, high nutritive value with high protein, and very high lipid, attractive body shape, and highly appealing shiny appearance. Recently increased productions of hilsa, in association with high demand but very high price, make it to be a good candidate for value-addition. The major challenge of hilsa value addition lies in its high lipid content, while lipids are the reasons for its unique tastiness. Under a national initiative, the present study therefore developed novel methods to prepare hilsa cube and hilsa powder by stabilizing lipids and proteins, which contained the original taste and flavor of hilsa, and had good storability in freezing and room temperature conditions for 6 months. The pre-spawning, moderate size (600-700g) female hilsa was used for product formulation. Proximate composition, biochemical qualities (TVB-N, TMA-N, pH, PV, TBA value, histamine content) of the hilsa cube and powder were analyzed following standard methods and sensory properties were analyzed using a 5-point hedonic scale. The biochemical parameters and sensory properties of the products varied based on ingredients used and the final product states. Both the products were in good quality for 6 months of storage, since cryoprotectants protected the protein quality both during freezing and high-temperature processing. Carotenoid extract from fresh carrots was found to be effective in reducing lipid oxidation in hilsa. Biochemical attributes in all products gradually decreased with storage time (p < 0.05). Almost similar sensory attributes were observed in both hilsa powder and hilsa cube, which were gradually decreased (p > 0.05) with the progress of the storage period. Both the products were within the acceptable quality limit during all storage periods and conditions. The results suggest that hilsa cube and powder have excellent quality standards, storage stability, and the possibility for fortifying ready-to-eat value-added hilsa products for the consumers at home and aboard.

Broodstock development and captive maturation of hilsa (Tenualosa ilisha) in a brackishwater pond-based system.

Successful captive broodstock development of clupeid fish, hilsa, is one of the major challenges for the artificial propagation of this economically valued fish. The present study provides novel insights into the pond-reared captive broodstock development of hilsa using artificial feed. In the present study, wild collected hilsa fry (weight 1.35 ± 0.13 g, length 53.84 ± 0.95 mm) were reared in grow-out ponds for 6 months followed by maintaining them as broodstock in other ponds using formulated feed in both cases. After 6 months of pond rearing, the average body weight and length of fish were 66.76 ± 4.53 g and 184.75 ± 3.65 mm, respectively. In broodstock ponds, hilsa subadults fed with formulated feed (crude protein 41.06%) ensured significant advancement in ovarian maturity with gonado somatic index of 9.09%, enhanced secondary yolk stage oocytes of 91.66% and enlargement of oocyte diameters up to 570 µm. The broodstock reached somatic growth such as average body weight and average body length of 383.80 ± 27.38 g and 339.33 ± 9.68 mm, respectively, with a condition factor of 1.06 ± 0.15. Gut content analysis revealed the better acceptability of the artificial feed. Lipid profiling of muscle and ovary during gonadal maturation revealed mobilization of fat from muscle to ovary and selective retention of some fatty acids (i.e., C14:0, C18:0, C20:5, C22:6 and C20:4) in the ovary, which might help in gonadal maturation. STATEMENT OF SIGNIFICANCE: Successful rearing of wild-caught hilsa juvenile in captive condition using formulated feed showed its potential as aquaculture species in low saline conditions. Advance stage of maturation in low saline captive conditions showed the possibility for induced breeding of hilsa, a high priced anadromous fish. Mobilization of fat from muscle to ovary and selective retention of some fatty acids in the ovary showed the scope of dietary manipulation for broodstock development of hilsa.

Effects of climate change and management policies on marine fisheries productivity in the north-east coast of India.

The study covers two important deltaic systems of the north-east coast of India, viz. the Bengal and Mahanadi delta that support about 1.25 million people. The changes in potential marine fish production and socio-economic conditions were modelled for these two deltas under long-term changes in environmental conditions (sea surface temperature and primary production) to the end of the 21st century. Our results show that an increased temperature (by 4 °C) has a negative impact on fisheries productivity, which was projected to decrease by 5%. At the species level, Bombay duck, Indian mackerel and threadfin bream showed an increasing trend in the biomass of potential catches under the sustainable fishing scenario. However, under the business as usual and overfishing scenarios, our results suggest reduced catch for both states. On the other hand, mackerel tuna, Indian oil sardine, and hilsa fisheries showed a projected reduction in potential catch also for the sustainable fishing scenario. The socio-economic models projected an increase of up to 0.67% (involving 0.8 billion USD) in consumption by 2050 even under the best management scenario. The GDP per capita was projected to face a loss of 1.7 billion USD by 2050. The loss of low-cost fisheries would negatively impact the poorer coastal population since they strongly depend upon these fisheries as a source of protein. Nevertheless, adaptation strategies tend to have a negative correlation with poverty and food insecurity which needs to be addressed separately to make the sector-specific efforts effective. This work can be considered as the baseline model for future researchers and the policymakers to explore potential sustainable management options for the studied regions.

A comparative metabolomics study on anadromous clupeid Tenualosa ilisha for better understanding the influence of habitat on nutritional composition.

INTRODUCTION: Fish inhabiting different aquatic habitats adapts to the environment by metabolomic readjustments. Understanding the combined activities of all the metabolic pathways (metabolome) helps in better understanding the complex interactions between gene and environment. OBJECTIVES: The anadromous migratory Tenualosa ilisha is a high value food fish comprising the dominant fishery of the rivers Padma and Hooghly. The present study aimed at understanding the influence of the two habitats on the nutritional composition of hilsa. METHODS: Metabolite profiling was carried out by GC/MS. De novo assembly of hilsa liver transcriptome was generated under Illumina HiSeq platform and multivariate analysis was employed for correlation and comparison. RESULTS: GC/MS fingerprinting showed C16:0, C18:1, C20:5 and C22:6 to be the predominant fatty acids present in hilsa liver, which were also found to be significantly higher in Hooghly hilsa. Comparative transcriptome analysis revealed that the differentially expressed genes were mainly associated with 'lipid metabolism' and 'amino acid metabolism' pathways. Multivariate analysis between the metabolites amino acid, fatty acid and corresponding gene expression showed that few genes of amino acid metabolism (EZH1, ALAS2 and ALDH4A1) positively correlated with individual amino acids (lysine, glycine and glutamate) in Hooghly hilsa. Similarly, the key genes for LC-PUFA biosynthesis (ELOVL5, FADS2, CPT1) showed positive correlation with individual LC-PUFAs (C18:3, C20:4, C20:5, C22:6), indicating higher LC-PUFA biosynthesis potential in Hooghly hilsa. CONCLUSION: Comparative metabolomic study in hilsa from the two different habitats showed that the habitats influence the nutritional composition as evidenced by high abundance of amino acids lysine, leucine and arginine and LC-PUFAs C18:3, C20:4, C20:5, C22:6 in Hooghly hilsa.

Differentiating three Indian shads by applying shape analysis from digital images.

Tenualosa ilisha, T. toli and Hilsa kelee are three Indian shad species of the family Clupeidae. In past, relationships among these shads have been explored in few morphological studies but still remain poorly understood. In this study, 120 specimens of three shad species were collected from the wild and a truss network system of 13 landmarks was interconnected to yield 77 size-adjusted characters. Discriminant function analysis (DFA) produced 13 discriminating variables in delineating the three species. The landmark based morphometric distance between origin of dorsal fin and posterior end of eye was the most important character in discriminating the three species. Three prominent characters extracted from DFA (distance between posterior end of operculum and posterior end of eye, distance between origin of dorsal fin and posterior end of eye and distance between insertion of pelvic fin and end of operculum) were used as traditional morphometric characters and their ratio to standard length were found significant in differentiating the three shad species. The present study strongly supports the efficiency of landmark-based morphological characters generated from digital images in discriminating the species and can be used as a rapid diagnostic tool in recognizing them.

Pseudobranch mimics gill in expressing Na+K+-ATPase 1 α-subunit and carbonic anhydrase in concert with H+-ATPase in adult hilsa (Tenualosa ilisha) during river migration.

In hilsa (Tenualosa ilisha), pseudobranch comprises a row of parallel filaments bear numerous leaf-like lamellae arranged on both sides throughout its length. The purpose of this study was to elucidate involvement of pseudobranchial Na+, K+-ATPase (NKA) 1 α-subunit, and carbonic anhydrase (CA) in concert with H+-ATPase (HAT) compared to their branchial counterparts in freshwater acclimation of hilsa during spawning migration from off-shore of the Bay of Bengal to the Bhagirathi-Hooghly zones of the Ganga river system in India. Adult hilsa fish were collected from seawater (SW), freshwater 1 (FW1), and freshwater 2 (FW2) locations, where the salinity level was 26-28‰, 1-5‰, and 0-0.04‰, respectively. Hilsa migrating through freshwater showed a consistent decrease in the plasma osmolality, sodium (Na+) and chloride (Cl-) ion levels indicates unstable ionic homeostasis. The mRNA expression and activity of NKA 1 α-subunit in pseudobranch as well as in true gills declined with the migration to upstream locations. The pseudobranchial CA activity almost mirrors its branchial counterpart most notably while hilsa entered the freshwater zone, in the upstream river suggesting its diverse role in hypo-osmotic regulatory acclimation. Nevertheless, the H+-ATPase activity of both the tissues increased with the freshwater entry and remained similar during up-river movement into the freshwater environment. The results confirm that the pseudobranchial NKA 1 α-subunit mRNA expression and activity mimic its branchial counterpart in the process of ionoregulatory acclimation during migration through salt barriers. Also, the increase in the activities of pseudobranchial and branchial CA in concert with H+-ATPase (HAT) during freshwater acclimation of hilsa suggests their critical involvement in ion uptake.

Understanding Social-Ecological Challenges of a Small-Scale Hilsa (Tenualosa ilisha) Fishery in Bangladesh.

Small-scale fisheries (SSFs) have been playing a crucial role in meeting the basic needs of millions of people around the world. Despite this, the sustainability of global fisheries is a growing concern, and the factors enabling or constraining the sustainable management of small-scale fisheries remain poorly understood. Hilsa shad (Tenualosa ilisha) is the single most valuable species harvested in Bangladesh waters, serves nutrition, income, and employment to the large population. This study analyzed the state and challenges of hilsa fishery in the Gangetic River systems (Padma and Meghna Rivers) by using two frameworks, namely the social-ecological systems (SES) and drivers-pressure-state-impact-responses (DPSIR) frameworks. Primary data for this analysis were collected by in-depth interviews (n = 130) and focus group discussions (n = 8) with various stakeholders in the hilsa fisheries. The perspectives explored here have been both critical and constructive, including the identification of problems and suggestions for improving the management of this particular social-ecological system. Hilsa fisheries, however, have come under severe threat since 2003 because of population growth, overfishing, pollution, climate change, the disruption of migration routes due to siltation, etc. All these have caused reduced catches and less stable incomes for fishers. This, in turn, has led to poverty, malnutrition, social tensions, stakeholder conflicts, and debt cycles amongst more impoverished fishing communities. These problems have been compounded by improved fishing technology amongst larger-scale ventures, the use of illegal fishing gears, and the non-compliance of government fishery management programs. Recommendations include the promotion of community-supported fisheries, the enhancement of stakeholder's social resilience, the introduction of co-management approach, an increase in incentives and formal financial supports, and possible community-managed sustainable ecotourism including hilsa fishing-based tourism.

First draft genome assembly and identification of SNPs from hilsa shad ( Tenualosa ilisha) of the Bay of Bengal.

Background: Hilsa shad ( Tenualosa ilisha), a widely distributed migratory fish, contributes substantially to the economy of Bangladesh. The harvest of hilsa from inland waters has been fluctuating due to anthropological and climate change-induced degradation of the riverine habitats.  The whole genome sequence of this valuable fish could provide genomic tools for sustainable harvest, conservation and productivity cycle maintenance. Here, we report the first draft genome of  T. ilisha from the Bay of Bengal, the largest reservoir of the migratory fish. Methods: A live specimen of T. ilisha was collected from the Bay of Bengal. The whole genome sequencing was performed by the Illumina HiSeqX platform (2 × 150 paired end configuration). We assembled the short reads using SOAPdenovo2 genome assembler and predicted protein coding genes by AUGUSTUS. The completeness of the T. ilisha genome assembly was evaluated by BUSCO (Benchmarking Universal Single Copy Orthologs). We identified single nucleotide polymorphisms (SNPs) by calling them directly from unassembled sequence reads using discoSnp++. Results: We assembled the draft genome of 710.28 Mb having an N50 scaffold length of 64157 bp and GC content of 42.95%. A total of 37,450 protein coding genes were predicted of which 29,339 (78.34%) were annotated with other vertebrate genomes. We also identified 792,939 isolated SNPs with transversion:transition ratio of 1:1.8. The BUSCO evaluation showed 78.1% completeness of this genome. Conclusions: The genomic data generated in this study could be used as a reference to identify genes associated with physiological and ecological adaptations, population connectivity, and migration behaviour of this biologically and economically important anadromous fish species of the Clupeidae family.

Microbiome patterns reveal the transmission of pathogenic bacteria in hilsa fish (Tenualosa ilisha) marketed for human consumption in Bangladesh.

AIMS: This study conducted bacterial community, virulence and antibiogram profiling inside the hindgut and skin of freshly caught hilsa fish and those sold at markets. METHODS AND RESULTS: The results of 16S rRNA-based high-throughput sequencing showed a higher number of bacterial genera in marketed fish samples than in fresh fish samples. The total operational taxonomic units, genus counts and diversity index were significantly higher (P > 0·05) in marketed fish, which also had abundant pathogenic bacterial groups. Skin samples had a lower profusion of pathogenic bacteria than gut samples. A total of 52 bacterial isolates from nine species were identified in this study, of which 25 were from a Chittagong market and 22 were from a Dhaka market, whereas only five were from fresh hilsa. The polymerase chain reaction amplification of 12 species-specific virulence genes in the 52 isolates, namely, aer, hly, chxA, toxB, rtxC, sfa, uge, norB, trx, toxA, ipaH, sigA and coa, indicated a high number of positive samples containing Vibrio cholerae, Aeromonas spp., Klebsiella pneumoniae, Escherichia coli and Staphylococcus aureus. Antibiogram profiling of these bacteria against 10 commercial antibiotics showed high-resistance patterns of the isolates against sulfamethoxazole, kanamycin, neomycin, ampicillin and tetracycline. CONCLUSION: The results reveal the spread of multidrug-resistant bacteria in hilsa fish marketed for human consumption in Bangladesh. SIGNIFICANCE AND IMPACT OF THE STUDY: This study highlights the risk of spreading environmentally and clinically pathogenic bacteria in fish sold for human consumption in Bangladesh. Such bacteria come from aquatic pollution and poor handling, storage and transportation practices that may predispose fish to major outbreaks of infectious and waterborne diseases.

Alteration in branchial NKA and NKCC ion-transporter expression and ionocyte distribution in adult hilsa during up-river migration.

Hilsa (Tenualosa ilisha) is a clupeid that migrates from the off-shore area through the freshwater river for spawning. The purpose of this study was to investigate the involvement of branchial Na+/K+-ATPase (NKA) and Na+/K+/2Cl- cotransporter (NKCC) in maintaining ionic homeostasis in hilsa while moving across the salt barriers. Hilsa, migrating through marine and brackish waters, did not show any significant decline in NKA activity, plasma osmolality, and plasma ionic concentration. In contrast, all the parameters declined significantly, after the fish reached in freshwater zone of the river. Immunoblotting with NKA α antibody recognized two bands in gill homogenates. The intensity of the higher molecular NKA band decreased, while the other band subsequently increased accompanying the movement of hilsa from marine water (MW) to freshwater. Nevertheless, total NKA expression in marine water did not change prior to freshwater entry. NKCC expression was down-regulated in gill, parallel with NKA activity, as the fish approached to the freshwater stretch of river. The NKA α-1 and NKCC1 protein abundance decreased in freshwater individuals by 40% and 31%, respectively, compared to MW. NKA and NKCC1 were explicitly localized to branchial ionocytes and immunoreactive signal appeared throughout the cytoplasm except for the nucleus and the most apical region indicates a basolateral/tubular distribution. Immunoreactive ionocytes were distributed on the filaments and lamellae; lamellar ionocytes were more in number irrespective of habitat salinity. The decrease in salinity caused a slight reduction in ionocyte number, but not in size and the underlying distribution pattern did not alter. The overall results support previously proposed models that both the ion transporters are involved in maintaining ionic homeostasis and lamellar ionocytes may have the function in hypo-osmoregulation in migrating hilsa, unlike other anadromous teleosts.

Biology and fisheries of Hilsa shad in Bay of Bengal.

Hilsa (Tenualosa ilisha) or river shad is an anadromous fish species widely distributed in the North Indian Ocean, mainly in the Bay of Bengal (BoB). Hilsa is the national fish of Bangladesh and it contributes 10% of the total fish production of the country, with a market value of $1.74 billion. Hilsa also holds a very important place in the economics of West Bengal of India with 12.5% of the catch and also tops the marine capture in Myanmar. During the last two decades Hilsa production from inland waters has been stable, whereas marine yields in the BoB increased substantially. In order to sustainably manage the trans-boundary stock of Hilsa, the taxonomy, distribution, habitat, migration patterns, population dynamics, fisheries and socio-economics aspects of the fishery have been reviewed here. To achieve a successful trans-boundary management for the Hilsa stock, complete ban on undersize fishing, well-targeted temporal and spatial bans, creation of protected areas in strategic points, incentive for Hilsa fishers and ecological restoration of Hilsa habitats and more work on technological development of Hilsa aquaculture are recommended.

Genome of Tenualosa ilisha from the river Padma, Bangladesh.

OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. DATA DESCRIPTION: The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome.