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1.
J Diabetes ; 16(8): e13596, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-39136497

RESUMO

BACKGROUND: Novel diabetes phenotypes were proposed by the Europeans through cluster analysis, but Chinese community diabetes populations might exhibit different characteristics. This study aims to explore the clinical characteristics of novel diabetes subgroups under data-driven analysis in Chinese community diabetes populations. METHODS: We used K-means cluster analysis in 6369 newly diagnosed diabetic patients from eight centers of the REACTION (Risk Evaluation of cAncers in Chinese diabeTic Individuals) study. The cluster analysis was performed based on age, body mass index, glycosylated hemoglobin, homeostatic modeled insulin resistance index, and homeostatic modeled pancreatic ß-cell functionality index. The clinical features were evaluated with the analysis of variance (ANOVA) and chi-square test. Logistic regression analysis was done to compare chronic kidney disease and cardiovascular disease risks between subgroups. RESULTS: Overall, 2063 (32.39%), 658 (10.33%), 1769 (27.78%), and 1879 (29.50%) populations were assigned to severe obesity-related and insulin-resistant diabetes (SOIRD), severe insulin-deficient diabetes (SIDD), mild age-associated diabetes mellitus (MARD), and mild insulin-deficient diabetes (MIDD) subgroups, respectively. Individuals in the MIDD subgroup had a low risk burden equivalent to prediabetes, but with reduced insulin secretion. Individuals in the SOIRD subgroup were obese, had insulin resistance, and a high prevalence of fatty liver, tumors, family history of diabetes, and tumors. Individuals in the SIDD subgroup had severe insulin deficiency, the poorest glycemic control, and the highest prevalence of dyslipidemia and diabetic nephropathy. Individuals in MARD subgroup were the oldest, had moderate metabolic dysregulation and the highest risk of cardiovascular disease. CONCLUSION: The data-driven approach to differentiating the status of new-onset diabetes in the Chinese community was feasible. Patients in different clusters presented different characteristics and risks of complications.


Assuntos
Diabetes Mellitus Tipo 2 , Humanos , Feminino , Masculino , Pessoa de Meia-Idade , China/epidemiologia , Análise por Conglomerados , Fatores de Risco , Idoso , Diabetes Mellitus Tipo 2/epidemiologia , Diabetes Mellitus Tipo 2/etnologia , Diabetes Mellitus Tipo 2/complicações , Adulto , Resistência à Insulina , Complicações do Diabetes/epidemiologia , Diabetes Mellitus/epidemiologia , Diabetes Mellitus/etnologia , Doenças Cardiovasculares/epidemiologia , Doenças Cardiovasculares/etiologia , Hemoglobinas Glicadas/análise , Hemoglobinas Glicadas/metabolismo , Índice de Massa Corporal , Povo Asiático/estatística & dados numéricos , População do Leste Asiático
2.
Cardiovasc Diabetol ; 23(1): 304, 2024 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-39152445

RESUMO

BACKGROUND: Insulin resistance is linked to an increased risk of frailty, yet the comprehensive relationship between the triglyceride glucose-body mass index (TyG-BMI), which reflects weight, and frailty, remains unclear. This relationship is investigated in this study. METHODS: Data from 9135 participants in the China Health and Retirement Longitudinal Study (2011-2020) were analysed. Baseline TyG-BMI, changes in the TyG-BMI and cumulative TyG-BMI between baseline and 2015, along with the frailty index (FI) over nine years, were calculated. Participants were grouped into different categories based on TyG-BMI changes using K-means clustering. FI trajectories were assessed using a group-based trajectory model. Logistic and Cox regression models were used to analyse the associations between the TyG-BMI and FI trajectory and frail incidence. Nonlinear relationships were explored using restricted cubic splines, and a linear mixed-effects model was used to evaluate FI development speed. Weighted quantile regression was used to identify the primary contributing factors. RESULTS: Four classes of changes in the TyG-BMI and two FI trajectories were identified. Individuals in the third (OR = 1.25, 95% CI: 1.10-1.42) and fourth (OR = 1.83, 95% CI: 1.61-2.09) quartiles of baseline TyG-BMI, those with consistently second to highest (OR = 1.49, 95% CI: 1.32-1.70) and the highest (OR = 2.17, 95% CI: 1.84-2.56) TyG-BMI changes, and those in the third (OR = 1.20, 95% CI: 1.05-1.36) and fourth (OR = 1.94, 95% CI: 1.70-2.22) quartiles of the cumulative TyG-BMI had greater odds of experiencing a rapid FI trajectory. Higher frail risk was noted in those in the fourth quartile of baseline TyG-BMI (HR = 1.42, 95% CI: 1.28-1.58), with consistently second to highest (HR = 1.23, 95% CI: 1.12-1.34) and the highest TyG-BMI changes (HR = 1.58, 95% CI: 1.42-1.77), and those in the third (HR = 1.10, 95% CI: 1.00-1.21) and fourth quartile of cumulative TyG-BMI (HR = 1.46, 95% CI: 1.33-1.60). Participants with persistently second-lowest to the highest TyG-BMI changes (ß = 0.15, 0.38 and 0.76 respectively) and those experiencing the third to fourth cumulative TyG-BMI (ß = 0.25 and 0.56, respectively) demonstrated accelerated FI progression. A U-shaped association was observed between TyG-BMI levels and both rapid FI trajectory and higher frail risk, with BMI being the primary factor. CONCLUSION: A higher TyG-BMI is associated with the rapid development of FI trajectory and a greater frail risk. However, excessively low TyG-BMI levels also appear to contribute to frail development. Maintaining a healthy TyG-BMI, especially a healthy BMI, may help prevent or delay the frail onset.


Assuntos
Biomarcadores , Glicemia , Índice de Massa Corporal , Idoso Fragilizado , Fragilidade , Avaliação Geriátrica , Triglicerídeos , Humanos , Masculino , Fragilidade/epidemiologia , Fragilidade/diagnóstico , Fragilidade/sangue , Feminino , Pessoa de Meia-Idade , Idoso , China/epidemiologia , Incidência , Glicemia/metabolismo , Triglicerídeos/sangue , Fatores de Risco , Medição de Risco , Estudos Longitudinais , Fatores de Tempo , Fatores Etários , Biomarcadores/sangue , Resistência à Insulina , Prognóstico , Idoso de 80 Anos ou mais
3.
J Orthop Surg Res ; 19(1): 479, 2024 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-39143616

RESUMO

BACKGROUND: Characterizing the condition of patients suffering from knee osteoarthritis is complex due to multiple associations between clinical, functional, and structural parameters. While significant variability exists within this population, especially in candidates for total knee arthroplasty, there is increasing interest in knee kinematics among orthopedic surgeons aiming for more personalized approaches to achieve better outcomes and satisfaction. The primary objective of this study was to identify distinct kinematic phenotypes in total knee arthroplasty candidates and to compare different methods for the identification of these phenotypes. METHODS: Three-dimensional kinematic data obtained from a Knee Kinesiography exam during treadmill walking in the clinic were used. Various aspects of the clustering process were evaluated and compared to achieve optimal clustering, including data preparation, transformation, and representation methods. RESULTS: A K-Means clustering algorithm, performed using Euclidean distance, combined with principal component analysis applied on data transformed by standardization, was the optimal approach. Two unique kinematic phenotypes were identified among 80 total knee arthroplasty candidates. The two distinct phenotypes divided patients who significantly differed both in terms of knee kinematic representation and clinical outcomes, including a notable variation in 63.3% of frontal plane features and 81.8% of transverse plane features across 77.33% of the gait cycle, as well as differences in the Pain Catastrophizing Scale, highlighting the impact of these kinematic variations on patient pain and function. CONCLUSION: Results from this study provide valuable insights for clinicians to develop personalized treatment approaches based on patients' phenotype affiliation, ultimately helping to improve total knee arthroplasty outcomes.


Assuntos
Artroplastia do Joelho , Osteoartrite do Joelho , Humanos , Artroplastia do Joelho/métodos , Fenômenos Biomecânicos , Feminino , Masculino , Idoso , Pessoa de Meia-Idade , Análise por Conglomerados , Osteoartrite do Joelho/cirurgia , Osteoartrite do Joelho/fisiopatologia , Articulação do Joelho/fisiopatologia , Articulação do Joelho/cirurgia , Fenótipo , Marcha/fisiologia
4.
Artigo em Inglês | MEDLINE | ID: mdl-39149164

RESUMO

Mudstones and shales serve as natural barrier rocks in various geoenergy applications. Although many studies have investigated their mechanical properties, characterizing these parameters at the microscale remains challenging due to their fine-grained nature and susceptibility to microstructural damage introduced during sample preparation. This study aims to investigate the micromechanical properties of clay matrix composite in mudstones by combining high-speed nanoindentation mapping and machine learning data analysis. The nanoindentation approach effectively captured the heterogeneity in high-resolution mechanical property maps. Utilizing machine learning-based k-means clustering, the mechanical characteristics of matrix clay, brittle minerals, as well as measurements on grain boundaries and structural discontinuities (e.g., cracks) were successfully distinguished. The classification results were validated through correlation with broad ion beam-scanning electron microscopy images. The resulting average reduced elastic modulus (E r ) and hardness (H) values for the clay matrix were determined to be 16.2 ± 6.2 and 0.5 ± 0.5 GPa, respectively, showing consistency across different test settings and indenter tips. Furthermore, the sensitivity of indentation measurements to various factors was investigated, revealing limited sensitivity to indentation depth and tip geometry (when comparing Cube corner and Berkovich tip in a small range of indentation depth variations), but decreased stability at lower loading rates. Box counting and bootstrapping methods were applied to assess the representativeness of parameters determined for the clay matrix. A relatively small dataset (indentation number = 60) is needed to achieve representativeness, while the main challenges is to cover a representative mapping area for clay matrix characterization. Overall, this study demonstrates the feasibility of high-speed nanoindentation mapping combined with data analysis for micromechanical characterization of the clay matrix in mudstones, paving the way for efficient analysis of similar fine-grained sedimentary rocks. Supplementary Information: The online version contains supplementary material available at 10.1007/s40948-024-00864-9.

5.
Cogn Neurodyn ; 18(4): 1931-1941, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-39104701

RESUMO

Chronic exposure to the hypobaric hypoxia environment of plateau could influence human cognitive behaviours which are supported by dynamic brain connectivity states. Until now, how functional connectivity (FC) of the brain network changes with altitudes is still unclear. In this article, we used EEG data of the Go/NoGo paradigm from Weinan (347 m) and Nyingchi (2950 m). A combination of dynamic FC (dFC) and the K-means cluster was employed to extract dynamic FC states which were later distinguished by graph metrics. Besides, temporal properties of networks such as fractional windows (FW), transition numbers (TN) and mean dwell time (MDT) were calculated. Finally, we successfully extracted two different states from dFC matrices where State 1 was verified to have higher functional integration and segregation. The dFC states dynamically switched during the Go/NoGo tasks and the FW of State 1 showed a rise in the high-altitude participants. Also, in the regional analysis, we found higher state deviation in the fronto-parietal cortices and enhanced FC strength in the occipital lobe. These results demonstrated that long-term exposure to the high-altitude environment could lead brain networks to reorganize as networks with higher inter- and intra-networks information transfer efficiency, which could be attributed to a compensatory mechanism to the compromised brain function due to the plateau environment. This study provides a new perspective in considering how the plateau impacted cognitive impairment.

6.
Sensors (Basel) ; 24(15)2024 Jul 31.
Artigo em Inglês | MEDLINE | ID: mdl-39124012

RESUMO

With the increasingly widespread application of large-scale energy storage battery systems, the demand for battery safety is rising. Research on how to detect battery anomalies early and reduce the occurrence of thermal runaway (TR) accidents has become particularly important. Existing research on battery TR warning algorithms can be mainly divided into two categories: model-driven and data-driven methods. However, the common model-driven methods are often of high complexity, with poor versatility and low early warning capability; and the common data-driven methods are mostly based on neural networks, requiring substantial training costs, with better early warning capabilities but higher false alarm probabilities. To address the limitations of existing works, this paper proposes a combined data-driven and model-based algorithm for accurate battery TR warnings. Specifically, the K-Means algorithm serves as the data-driven module, capturing outliers in battery data, and the Bernardi equation serves as the model-driven module used to evaluate battery temperature. Ultimately, the outputs of the weighted model-driven module and data-driven module are combined to comprehensively assess whether the battery is abnormal. The proposed algorithm combines the advantages of model-driven and data-driven approaches, achieving a 25 min advance warning for thermal runaway, with a significantly reduced probability of false alarms.

7.
PeerJ Comput Sci ; 10: e2198, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39145241

RESUMO

Every work environment contains different types of risks and interactions between risks. Therefore, the method to be used when making a risk assessment is very important. When determining which risk assessment method (RAM) to use, there are many factors such as the types of risks in the work environment, the interactions of these risks with each other, and their distance from the employees. Although there are many RAMs available, there is no RAM that will suit all workplaces and which method to choose is the biggest question. There is no internationally accepted scale or trend on this subject. In the study, 26 sectors, 10 different RAMs and 10 criteria were determined. A hybrid approach has been designed to determine the most suitable RAMs for sectors by using k-means clustering and support vector machine (SVM) classification algorithms, which are machine learning (ML) algorithms. First, the data set was divided into subsets with the k-means algorithm. Then, the SVM algorithm was run on all subsets with different characteristics. Finally, the results of all subsets were combined to obtain the result of the entire dataset. Thus, instead of the threshold value determined for a single and large cluster affecting the entire cluster and being made mandatory for all of them, a flexible structure was created by determining separate threshold values for each sub-cluster according to their characteristics. In this way, machine support was provided by selecting the most suitable RAMs for the sectors and eliminating the administrative and software problems in the selection phase from the manpower. The first comparison result of the proposed method was found to be the hybrid method: 96.63%, k-means: 90.63 and SVM: 94.68%. In the second comparison made with five different ML algorithms, the results of the artificial neural networks (ANN): 87.44%, naive bayes (NB): 91.29%, decision trees (DT): 89.25%, random forest (RF): 81.23% and k-nearest neighbours (KNN): 85.43% were found.

8.
Jpn J Radiol ; 2024 Aug 20.
Artigo em Inglês | MEDLINE | ID: mdl-39162780

RESUMO

PURPOSE: The aim of this study is to determine intratumoral habitat regions from multi-sequences magnetic resonance imaging (MRI) and to assess the value of those regions for prediction of patient response to neoadjuvant chemotherapy (NAC) in nasopharyngeal carcinoma (NPC). MATERIALS AND METHODS: Two hundred and ninety seven patients with NPC were enrolled. Multi-sequences MRI data were used to outline three-dimensional volumes of interest (VOI) of the whole tumor. The original imaging data were divided into two groups, which were resampled to an isotropic resolution of 1 × 1 × 1 mm3 (group_1mm) and 3 × 3 × 3 mm3 (group_3mm). Nineteen radiomics features were computed for each voxel of three sequences in group_3mm, within the tumor region to extract local information. Then, k-means clustering was implemented to segment the whole tumor regions in two groups. After radiomics features were extracted and dimension reduction, habitat models were built using Multi-Layer Perceptron (MLP) algorithm. RESULTS: Only T stage was included as the clinical model. The habitat3mm model, which included 10 radiomics features, achieved AUCs of 0.752 and 0.724 in the training and validation cohorts, respectively. Given the slightly better outcome of habitat3mm model, nomogram was developed in combination with habitat3mm model and T stage with the AUC of 0.749 and 0.738 in the training and validation cohorts. The decision curve analysis provides further evidence of the nomogram's clinical practicality. CONCLUSIONS: A nomogram based on intratumoral habitat predicts the efficacy of NAC in NPC patients, offering the potential to improve both the treatment plan and patient outcomes.

9.
Fish Shellfish Immunol ; 152: 109788, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-39053586

RESUMO

In the process of screening for probiotic strains, there are no clearly established bacterial phenotypic markers which could be used for the prediction of their in vivo mechanism of action. In this work, we demonstrate for the first time that Machine Learning (ML) methods can be used for accurately predicting the in vivo immunomodulatory activity of probiotic strains based on their cell surface phenotypic features using a snail host-microbe interaction model. A broad range of snail gut presumptive probiotics, including 240 new lactic acid bacterial strains (Lactobacillus, Leuconostoc, Lactococcus, and Enterococcus), were isolated and characterized based on their capacity to withstand snails' gastrointestinal defense barriers, such as the pedal mucus, gastric mucus, gastric juices, and acidic pH, in association with their cell surface hydrophobicity, autoaggregation, and biofilm formation ability. The implemented ML pipeline predicted with high accuracy (88 %) strains with a strong capacity to enhance chemotaxis and phagocytic activity of snails' hemolymph cells, while also revealed bacterial autoaggregation and cell surface hydrophobicity as the most important parameters that significantly affect host immune responses. The results show that ML approaches may be useful to derive a predictive understanding of host-probiotic interactions, while also highlighted the use of snails as an efficient animal model for screening presumptive probiotic strains in the light of their interaction with cellular innate immune responses.


Assuntos
Aprendizado de Máquina , Probióticos , Probióticos/farmacologia , Animais , Lactobacillales/fisiologia , Lactobacillales/imunologia , Caramujos/imunologia , Caramujos/microbiologia , Caracois Helix/imunologia , Caracois Helix/fisiologia , Imunidade Inata , Imunomodulação
10.
Biomed Phys Eng Express ; 10(5)2024 Aug 08.
Artigo em Inglês | MEDLINE | ID: mdl-39084238

RESUMO

Objective. Single-isocenter-multiple-target technique for stereotactic radiosurgery (SRS) can reduce treatment duration but risks compromised dose coverage due to potential rotational errors. Clustering targets into two groups can reduce isocenter-target distances, mitigating the impact of rotational uncertainty. However, a comprehensive evaluation of clustering algorithms for SRS is absent. This study addresses this gap by introducing the SRS Target Clustering Framework (Framework), a comprehensive tool that utilizes commonly used clustering algorithms to generate efficient cluster configurations.Approach. The Framework incorporates four distinct optimization objectives based on two key metrics: the isocenter-target distance and the ratio of this distance to the target radius. Agglomerative and weighted agglomerative clustering are employed for minimax and weighted minimax objectives, respectively. K-means and weighted k-means are utilized for sum-of-squares and weighted sum-of-squares objectives. We applied the Framework to 126 SRS plans, comparing results to ground truth solutions obtained through a brute force algorithm.Main results. For the minimax objective, the average maximum isocenter-target distance from agglomerative clustering (4.8 cm) was slightly higher than the ground truth (4.6 cm). Similarly, the weighted agglomerative clustering achieved an average maximum ratio of 15.1 compared to the ground truth of 14.6. Notably, both k-means and weighted k-means clustering showed close agreement (within a precision of 0.1) with the ground truth for average root-mean-square target-isocenter distance and ratio (3.6 cm and 11.1, respectively).Significance. These results demonstrate the Framework's effectiveness in generating clusters for SRS targets. The proposed approach has the potential to become a valuable tool in SRS treatment planning. Furthermore, this study is the first to investigate clustering algorithms for both minimizing maximum and sum-of-squares uncertainty in SRS.


Assuntos
Algoritmos , Radiocirurgia , Planejamento da Radioterapia Assistida por Computador , Radiocirurgia/métodos , Humanos , Análise por Conglomerados , Planejamento da Radioterapia Assistida por Computador/métodos , Dosagem Radioterapêutica
11.
Clin Res Hepatol Gastroenterol ; 48(7): 102413, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38960124

RESUMO

BACKGROUND: Prior typing methods fail to provide predictive insights into surgical complexities for extrahepatic choledochal cyst (ECC). This study aims to establish a new classification system for ECC through clustering of imaging results. Additionally, it seeks to compare the differences among the identified ECC types and assess the levels of surgical difficulty. METHODS: The imaging data of 124 patients were automatically grouped through a K-means clustering analysis. According to the characteristics of the new grouping, corrections and interventions were carried out to establish a new classification. Demographic data, clinical presentations, surgical parameters, complications, reoperation, and prognostic indicators were analyzed according to different types. Factors contributing to prolonged surgical time were also evaluated. RESULTS: A new classification system of ECC: Type A (upper segment), Type B (middle segment), Type C (lower segment), and Type D (entire bile duct). The incidences of comorbidities (calculus or infection) were significantly different (P = 0.000, P = 0.002). Additionally, variations in the incidence of postoperative biliary stricture were statistically significant (P = 0.046). The operative time was significantly different between groups (P = 0.001). Age, BMI > 30, classification, and the presence of combined stones exhibit a significant association with prolonged operative time (P = 0.002, P = 0.000, P = 0.011, P = 0.011). CONCLUSION: In conclusion, our utilization of machine learning-driven cluster analysis has enabled the creation of a novel extrahepatic biliary dilatation typology. This classification, in conjunction with factors like age, combined stone occurrence, and obesity, significantly influences the complexity of laparoscopic choledochal cyst surgery, offering valuable insights for improved surgical treatment.


Assuntos
Cisto do Colédoco , Laparoscopia , Humanos , Cisto do Colédoco/cirurgia , Cisto do Colédoco/classificação , Feminino , Masculino , Adulto , Pessoa de Meia-Idade , Estudos Retrospectivos , Adolescente , Adulto Jovem , Duração da Cirurgia , Complicações Pós-Operatórias/epidemiologia
12.
Traffic Inj Prev ; : 1-9, 2024 Jul 24.
Artigo em Inglês | MEDLINE | ID: mdl-39046244

RESUMO

OBJECTIVES: Aggressive driving behavior can lead to potential traffic collision risks, and abnormal weather conditions can exacerbate this behavior. This study aims to develop recognition models for aggressive driving under various climate conditions, addressing the challenge of collecting sufficient data in abnormal weather. METHODS: Driving data was collected in a virtual environment using a driving simulator under both normal and abnormal weather conditions. A model was trained on data from normal weather (source domain) and then transferred to foggy and rainy weather conditions (target domains) for retraining and fine-tuning. The K-means algorithm clustered driving behavior instances into three styles: aggressive, normal, and cautious. These clusters were used as labels for each instance in training a CNN model. The pre-trained CNN model was then transferred and fine-tuned for abnormal weather conditions. RESULTS: The transferred models showed improved recognition performance, achieving an accuracy score of 0.81 in both foggy and rainy weather conditions. This surpassed the non-transferred models' accuracy scores of 0.72 and 0.69, respectively. CONCLUSIONS: The study demonstrates the significant application value of transfer learning in recognizing aggressive driving behaviors with limited data. It also highlights the feasibility of using this approach to address the challenges of driving behavior recognition under abnormal weather conditions.

13.
Data Brief ; 55: 110677, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-39071972

RESUMO

This dataset demonstrates the use of computational fragmentation-based and machine learning-aided drug discovery to generate new lead molecules for the treatment of hypertension. Specifically, the focus is on agents targeting the renin-angiotensin-aldosterone system (RAAS), commonly classified as Angiotensin-Converting Enzyme Inhibitors (ACEIs) and Angiotensin II Receptor Blockers (ARBs). The preliminary dataset was a target-specific, user-generated fragment library of 63 molecular fragments of the 26 approved ACEI and ARB molecules obtained from the ChEMBL and DrugBank molecular databases. This fragment library provided the primary input dataset to generate the new lead molecules presented in the dataset. The newly generated molecules were screened to check whether they met the criteria for oral drugs and comprised the ACEI or ARB core functional group criterion. Using unsupervised machine learning, the molecules that met the criterion were divided into clusters of drug classes based on their functional group allocation. This process led to three final output datasets, one containing the new ACEI molecules, another for the new ARB molecules, and the last for the new unassigned class molecules. This data can aid in the timely and efficient design of novel antihypertensive drugs. It can also be used in precision hypertension medicine for patients with treatment resistance, non-response or co-morbidities. Although this dataset is specific to antihypertensive agents, the model can be reused with minimal changes to produce new lead molecules for other health conditions.

14.
World J Gastrointest Oncol ; 16(7): 3169-3192, 2024 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-39072166

RESUMO

BACKGROUND: Angiogenesis plays an important role in colon cancer (CC) progression. AIM: To investigate the tumor microenvironment (TME) and intratumor microbes of angiogenesis subtypes (AGSs) and explore potential targets for antiangiogenic therapy in CC. METHODS: The data were obtained from The Cancer Genome Atlas database and Gene Expression Omnibus database. K-means clustering was used to construct the AGSs. The prognostic model was constructed based on the differential genes between two subtypes. Single-cell analysis was used to analyze the expression level of SLC2A3 on different cells in CC, which was validated by immunofluorescence. Its biological functions were further explored in HUVECs. RESULTS: CC samples were grouped into two AGSs (AGS-A and AGS-B) groups and patients in the AGS-B group had poor prognosis. Further analysis revealed that the AGS-B group had high infiltration of TME immune cells, but also exhibited high immune escape. The intratumor microbes were also different between the two subtypes. A convenient 6-gene angiogenesis-related signature (ARS), was established to identify AGSs and predict the prognosis in CC patients. SLC2A3 was selected as the representative gene of ARS, which was higher expressed in endothelial cells and promoted the migration of HUVECs. CONCLUSION: Our study identified two AGSs with distinct prognoses, TME, and intratumor microbial compositions, which could provide potential explanations for the impact on the prognosis of CC. The reliable ARS model was further constructed, which could guide the personalized treatment. The SLC2A3 might be a potential target for antiangiogenic therapy.

15.
J Biomed Inform ; 156: 104688, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-39002866

RESUMO

OBJECTIVE: Survival analysis is widely utilized in healthcare to predict the timing of disease onset. Traditional methods of survival analysis are usually based on Cox Proportional Hazards model and assume proportional risk for all subjects. However, this assumption is rarely true for most diseases, as the underlying factors have complex, non-linear, and time-varying relationships. This concern is especially relevant for pregnancy, where the risk for pregnancy-related complications, such as preeclampsia, varies across gestation. Recently, deep learning survival models have shown promise in addressing the limitations of classical models, as the novel models allow for non-proportional risk handling, capturing nonlinear relationships, and navigating complex temporal dynamics. METHODS: We present a methodology to model the temporal risk of preeclampsia during pregnancy and investigate the associated clinical risk factors. We utilized a retrospective dataset including 66,425 pregnant individuals who delivered in two tertiary care centers from 2015 to 2023. We modeled the preeclampsia risk by modifying DeepHit, a deep survival model, which leverages neural network architecture to capture time-varying relationships between covariates in pregnancy. We applied time series k-means clustering to DeepHit's normalized output and investigated interpretability using Shapley values. RESULTS: We demonstrate that DeepHit can effectively handle high-dimensional data and evolving risk hazards over time with performance similar to the Cox Proportional Hazards model, achieving an area under the curve (AUC) of 0.78 for both models. The deep survival model outperformed traditional methodology by identifying time-varied risk trajectories for preeclampsia, providing insights for early and individualized intervention. K-means clustering resulted in patients delineating into low-risk, early-onset, and late-onset preeclampsia groups-notably, each of those has distinct risk factors. CONCLUSION: This work demonstrates a novel application of deep survival analysis in time-varying prediction of preeclampsia risk. Our results highlight the advantage of deep survival models compared to Cox Proportional Hazards models in providing personalized risk trajectory and demonstrating the potential of deep survival models to generate interpretable and meaningful clinical applications in medicine.


Assuntos
Pré-Eclâmpsia , Humanos , Pré-Eclâmpsia/mortalidade , Gravidez , Feminino , Análise de Sobrevida , Fatores de Risco , Aprendizado Profundo , Adulto , Estudos Retrospectivos , Modelos de Riscos Proporcionais , Redes Neurais de Computação , Medição de Risco/métodos
16.
Front Physiol ; 15: 1342572, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-39077759

RESUMO

Introduction: Brain tumors are abnormal cell growths in the brain, posing significant treatment challenges. Accurate early detection using non-invasive methods is crucial for effective treatment. This research focuses on improving the early detection of brain tumors in MRI images through advanced deep-learning techniques. The primary goal is to identify the most effective deep-learning model for classifying brain tumors from MRI data, enhancing diagnostic accuracy and reliability. Methods: The proposed method for brain tumor classification integrates segmentation using K-means++, feature extraction from the Spatial Gray Level Dependence Matrix (SGLDM), and classification with ResNet50, along with synthetic data augmentation to enhance model robustness. Segmentation isolates tumor regions, while SGLDM captures critical texture information. The ResNet50 model then classifies the tumors accurately. To further improve the interpretability of the classification results, Grad-CAM is employed, providing visual explanations by highlighting influential regions in the MRI images. Result: In terms of accuracy, sensitivity, and specificity, the evaluation on the Br35H::BrainTumorDetection2020 dataset showed superior performance of the suggested method compared to existing state-of-the-art approaches. This indicates its effectiveness in achieving higher precision in identifying and classifying brain tumors from MRI data, showcasing advancements in diagnostic reliability and efficacy. Discussion: The superior performance of the suggested method indicates its robustness in accurately classifying brain tumors from MRI images, achieving higher accuracy, sensitivity, and specificity compared to existing methods. The method's enhanced sensitivity ensures a greater detection rate of true positive cases, while its improved specificity reduces false positives, thereby optimizing clinical decision-making and patient care in neuro-oncology.

17.
PeerJ Comput Sci ; 10: e2019, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38983188

RESUMO

With the rapid growth of online property rental and sale platforms, the prevalence of fake real estate listings has become a significant concern. These deceptive listings waste time and effort for buyers and sellers and pose potential risks. Therefore, developing effective methods to distinguish genuine from fake listings is crucial. Accurately identifying fake real estate listings is a critical challenge, and clustering analysis can significantly improve this process. While clustering has been widely used to detect fraud in various fields, its application in the real estate domain has been somewhat limited, primarily focused on auctions and property appraisals. This study aims to fill this gap by using clustering to classify properties into fake and genuine listings based on datasets curated by industry experts. This study developed a K-means model to group properties into clusters, clearly distinguishing between fake and genuine listings. To assure the quality of the training data, data pre-processing procedures were performed on the raw dataset. Several techniques were used to determine the optimal value for each parameter of the K-means model. The clusters are determined using the Silhouette coefficient, the Calinski-Harabasz index, and the Davies-Bouldin index. It was found that the value of cluster 2 is the best and the Camberra technique is the best method when compared to overlapping similarity and Jaccard for distance. The clustering results are assessed using two machine learning algorithms: Random Forest and Decision Tree. The observational results have shown that the optimized K-means significantly improves the accuracy of the Random Forest classification model, boosting it by an impressive 96%. Furthermore, this research demonstrates that clustering helps create a balanced dataset containing fake and genuine clusters. This balanced dataset holds promise for future investigations, particularly for deep learning models that require balanced data to perform optimally. This study presents a practical and effective way to identify fake real estate listings by harnessing the power of clustering analysis, ultimately contributing to a more trustworthy and secure real estate market.

18.
Biomimetics (Basel) ; 9(7)2024 Jun 27.
Artigo em Inglês | MEDLINE | ID: mdl-39056832

RESUMO

Speech comprehension can be challenging due to multiple factors, causing inconvenience for both the speaker and the listener. In such situations, using a humanoid robot, Pepper, can be beneficial as it can display the corresponding text on its screen. However, prior to that, it is essential to carefully assess the accuracy of the audio recordings captured by Pepper. Therefore, in this study, an experiment is conducted with eight participants with the primary objective of examining Pepper's speech recognition system with the help of audio features such as Mel-Frequency Cepstral Coefficients, spectral centroid, spectral flatness, the Zero-Crossing Rate, pitch, and energy. Furthermore, the K-means algorithm was employed to create clusters based on these features with the aim of selecting the most suitable cluster with the help of the speech-to-text conversion tool Whisper. The selection of the best cluster is accomplished by finding the maximum accuracy data points lying in a cluster. A criterion of discarding data points with values of WER above 0.3 is imposed to achieve this. The findings of this study suggest that a distance of up to one meter from the humanoid robot Pepper is suitable for capturing the best speech recordings. In contrast, age and gender do not influence the accuracy of recorded speech. The proposed system will provide a significant strength in settings where subtitles are required to improve the comprehension of spoken statements.

19.
Arch Dermatol Res ; 316(7): 486, 2024 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-39042287

RESUMO

This study examines the influence of National Institutes of Health (NIH) funding on the publication choices of dermatologists, particularly in terms of journal tiers and pay-to-publish (P2P) versus free-to-publish (F2P) models. Utilizing k-means clustering for journal ranking based on SCImago Journal Rank, h-index, and Impact Factor, journals were categorized into three tiers and 54,530 dermatology publications from 2021 to 2023 were analyzed. Authors were classified as Top NIH Funded or Non-Top NIH Funded according to Blue Ridge Institute for Medical Research rankings. The study finds significant differences in publication patterns, with Top NIH Funded researchers in Tier I journals demonstrating a balanced use of P2P and F2P models, while they preferred F2P models in Tier II and III journals. Non-Top NIH Funded authors, however, opted for P2P models more frequently across all tiers. These data suggest NIH funding allows researchers greater flexibility to publish in higher-tier journals despite publication fees, while prioritizing F2P models in lower-tier journals. Such a pattern indicates that funding status plays a critical role in strategic publication decisions, potentially impacting research visibility and subsequent funding. The study's dermatology focus limits broader applicability, warranting further research to explore additional factors like geographic location, author gender, and research design.


Assuntos
Pesquisa Biomédica , Dermatologia , Fator de Impacto de Revistas , National Institutes of Health (U.S.) , Publicações Periódicas como Assunto , National Institutes of Health (U.S.)/economia , National Institutes of Health (U.S.)/tendências , Estados Unidos , Dermatologia/economia , Dermatologia/estatística & dados numéricos , Dermatologia/tendências , Humanos , Publicações Periódicas como Assunto/economia , Publicações Periódicas como Assunto/estatística & dados numéricos , Publicações Periódicas como Assunto/tendências , Pesquisa Biomédica/economia , Pesquisa Biomédica/tendências , Pesquisa Biomédica/estatística & dados numéricos , Editoração/estatística & dados numéricos , Editoração/tendências , Editoração/economia , Bibliometria , Apoio à Pesquisa como Assunto/estatística & dados numéricos , Apoio à Pesquisa como Assunto/tendências , Apoio à Pesquisa como Assunto/economia
20.
Sci Rep ; 14(1): 15880, 2024 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-38982101

RESUMO

The geological phenomenon of igneous rock invading coal seam is widely distributed, which induces mining risk and affects efficient mining. The pre-splitting blasting method of igneous rock is feasible but difficult to implement accurately, resulting in unnecessary safety and environmental pollution risks. In this paper, the blasting model with penetrating structural plane and the multi-hole blasting model with different hole spacing were established based on the Riedel-Hiermaier-Thoma (RHT) damage constitutive to explore the stress wave propagation law under detonation. The damage cloud diagram and damage degree algorithm were used to quantitatively describe the spatio-temporal evolution of blasting damage. The results show that the explosion stress wave presents a significant reflection stretching effect under the action of the structural plane, which can effectively aggravate the presplitting blasting degree of the rock mass inside the structural plane. The damage range of rock mass is synchronously evolved with the change of blasting hole spacing. The blasting in the igneous rock intrusion area of the 21,914 working face is taken as an application example, and the damage degree of rock mass is reasonably evaluated by the box-counting dimension and K-means clustering method, which proves the effectiveness of the blasting scheme and provides reference value for the implementation of related blasting projects.

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