A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei.

The Aeolian wall lizard, Podarcis raffonei, is an endangered species endemic to the Aeolian archipelago, Italy, where it is present only in 3 tiny islets and a narrow promontory of a larger island. Because of the extremely limited area of occupancy, severe population fragmentation and observed decline, it has been classified as Critically Endangered by the International Union for the Conservation of Nature (IUCN). Using Pacific Biosciences (PacBio) High Fidelity (HiFi) long-read sequencing, Bionano optical mapping and Arima chromatin conformation capture sequencing (Hi-C), we produced a high-quality, chromosome-scale reference genome for the Aeolian wall lizard, including Z and W sexual chromosomes. The final assembly spans 1.51 Gb across 28 scaffolds with a contig N50 of 61.4 Mb, a scaffold N50 of 93.6 Mb, and a BUSCO completeness score of 97.3%. This genome constitutes a valuable resource for the species to guide potential conservation efforts and more generally for the squamate reptiles that are underrepresented in terms of available high-quality genomic resources.

Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization.

Hybridization is a common evolutionary process with multiple possible outcomes. In vertebrates, interspecific hybridization has repeatedly generated parthenogenetic hybrid species. However, it is unknown whether the generation of parthenogenetic hybrids is a rare outcome of frequent hybridization between sexual species within a genus or the typical outcome of rare hybridization events. Darevskia is a genus of rock lizards with both hybrid parthenogenetic and sexual species. Using capture sequencing, we estimate phylogenetic relationships and gene flow among the sexual species, to determine how introgressive hybridization relates to the origins of parthenogenetic hybrids. We find evidence for widespread hybridization with gene flow, both between recently diverged species and deep branches. Surprisingly, we find no signal of gene flow between parental species of the parthenogenetic hybrids, suggesting that the parental pairs were either reproductively or geographically isolated early in their divergence. The generation of parthenogenetic hybrids in Darevskia is, then, a rare outcome of the total occurrence of hybridization within the genus, but the typical outcome when specific species pairs hybridize. Our results question the conventional view that parthenogenetic lineages are generated by hybridization in a window of divergence. Instead, they suggest that some lineages possess specific properties that underpin successful parthenogenetic reproduction.

Assessing Stress Response in Lizards from Agroecosystems with Different Management Practices.

Despite the importance of reptiles in agroecosystems, little is known about the effects of agricultural intensification and pesticide use on these animals. We compared antioxidant and haematological biomarkers in the wild Italian wall lizards Podarcis siculus from three olive groves representing a gradient of management intensity. Lizards from the conventional grove showed induced antioxidant defences relative to those from the organic field. However, this induction did not avoid the occurrence of oxidative stress in males from intensively managed olive groves, who showed TBARS levels 58%-133% higher than males from the other sites. Haematological responses also suggested increased stress in females from the intensively managed olive groves, with a heterophil-to-lymphocyte ratio 5.3 to 14.8-fold higher than in the other sites. The observed stress responses of lizards along the studied gradient of agricultural management suggest their potential usefulness as non-destructive biomarkers to environmental stressors associated with agricultural intensification.

Biogeography of Mesalina (Reptilia: Lacertidae), with special emphasis on the Mesalina adramitana group from Arabia and the Socotra Archipelago.

The lacertid lizards of the genus Mesalina inhabit the arid regions of the Old World, from North Africa to NW India. Of the 19 recognized species within the genus, eleven occur in Arabia. In this study, we explore the genetic variability and phylogeographic patterns of the less studied M. adramitana group from southern Arabia and the Socotra Archipelago within the phylogenetic and biogeographic context of the entire genus. Our unprecedented sampling extends the distribution ranges of most Mesalina species and, for the first time, sequences of M. ayunensis are included in a phylogenetic analysis. We perform analyses of concatenated multilocus datasets and species trees, conduct species delimitation analyses, and estimate divergence times within a biogeographic framework. Additionally, we inferred the environmental suitability and identified dispersal corridors through which gene flow is enabled within M. adramitana. Our results show that the Socotra Archipelago was colonized approximately 7 Mya by a single oversea colonization from mainland Arabia. Then, an intra-archipelago dispersal event that occurred approximately 5 Mya resulted in the speciation between M. balfouri, endemic to Socotra, Samha and Darsa Islands, and M. kuri, endemic to Abd al Kuri Island. Similar to previous studies, we uncovered high levels of genetic diversity within the M. adramitana species-group, with two highly divergent lineages of M. adramitana living in allopatry and adapted to locally specific climatic conditions that necessitate further investigation.

Head morphology and degree of variation in lacerta bilineata: podarcis muralis and podarcis sicula / Morfología de la cabeza y el grado de variación en lacerta bilineata: podarcis muralis y podarcis sicula

The morphology of cephalic scales in Lacertids is organised in well defined geometrical structures. The variation of these elements is related to the underlying bone growth and morphogenesis, but it is also associated with the muscular system and the sutural dynamics. In this paper, the patterns of variation of the cephalic scales have been compared between three common Mediterranean species: Podarcis muralis, Podarcis sicula and Lacerta bilineata. The morphospace generated by the morphological relationships within the cephalic system in these three species is investigated in order to consider their degree of variation and their anatomical peculiarities. Generally, Lacerta is 64 percent larger than Podarcis, shows a relative reduction of the frontal scale, enlarged fronto-parietal structures, and stretched occipital area. L. bilineata shows the smaller degree of variation within the shape space, while P. muralis shows the highest values. The morphology of the two genera is definitely different mostly because of allometric variation. Non-allometric distinctions between the three species are subtle but detectable. The degree and pattern of variation are interpreted in terms of possible environmental pressures and of functional cranial dynamics associated with the fronto-parietal suture, respectively. In this sense, the structural relationships between bones and scales are of particular interest to further investigate ontogeny and phylogeny in reptiles.

La morfología de las escamas cefálicas en Lacértidos se organiza en estructuras geométricas bien definidas. La variación de estos elementos está relacionada con el crecimiento y la morfogénesis del hueso subyacente, pero está también es asociada con el sistema muscular y sutural dinámico. En este trabajo, son comparados los patrones de variación de las escamas cefálicas de tres especies mediterráneas comunes: Podarcis muralis, Podarcis sicula y Lacerta bilineata. El morfoespacio generado por las relaciones morfológicas con el sistema cefálico en estas tres especies se investigó con el fin de examinar su grado de variación y sus peculiaridades anatómicas. En general, Lacerta es 64 por ciento más grande que Podarcis, muestra una reducción relativa de la escama frontal, alargamiento de la estructura fronto-parietal, y estrechamiento del área occipital. L. bilineata muestra el menor grado de variación en la forma del espacio, mientras que P. muralis muestra los valores más altos. La morfología de los dos géneros es diferente principalmente debido a variaciones alométricas. Diferencias no alométricas entre las tres especies son sutiles pero detectables. El grado y el patrón de variación son interpretados en términos de las posibles presiones del medio ambiente y la dinámica funcional craneal asociada a la sutura fronto-parietal, respectivamente. En este sentido, las relaciones estructurales entre los huesos y las escamas son de particular interés para seguir investigando ontogenia y filogenia de los reptiles.