Mesophotic Coral Ecosystems in the Eastern Tropical Pacific: The current state of knowledge and the spatial variability of their depth boundaries.

In the Eastern Tropical Pacific (ETP), Mesophotic Coral Ecosystems (MCEs) are limited by oceanographic conditions and are thought to be mostly absent. However, considering the currently discussed more flexible approach to define mesophotic boundaries, based on light availability, we performed a systematic search to assess their current state of knowledge. Using MODIS-Aqua satellite data (Kd490), we calculated the mesophotic boundaries in the ETP, based on optical depths, and performed a bibliographic search of studies carried out at those depths, including those present in turbid waters with KdPAR values up to 0.2 m-1. Seventy-seven papers on MCEs research were compiled in this review, recording a total of 138 species. The studies focus almost exclusively on taxonomy, ecosystem function, and reviews, indicating the need for future research regarding aspects, such as structuring environmental variables, molecular ecology, and natural resource management. Furthermore, remote sensing data show that there exists a high spatial variability of water transparency in the ETP, resulting in significant differences in KdPAR between oceanic and continental locations, mostly related to the occurrence of seasonal upwelling in the latter. Based on KdPAR, we estimated the mesophotic depth boundaries (z10%, z1%, z0.1%) for specific locations within the ETP and found that MCEs can potentially occur as shallow as 13-15 m in coastal regions. Also, we compared the calculated boundaries with the respective deepest records of light-dependent corals. With one exception, the presence of the corals was restricted to the upper mesophotic subzone (z10%-z1%), which agrees with reports for other regions, showing that light availability is one of the main drivers for the bathymetric distribution of MCEs and can be used as a first approach to identify their potential presence, though other local factors (e.g., geomorphology, temperature, internal waves) should also be considered, as they can cause shifts in depth limits.

Assessment of the physical impact of a short-term dredging operation on a semi-enclosed environment: South Euboean Gulf, Greece.

The potential influence of short-period (May-June 2012) dredging activities (for the installation of a submarine gas pipeline) on physical properties of the marine environment of two shallow-water sites in the Aliveri and Varnavas areas of South Euboean Gulf (Greece) has been evaluated. During the dredging operation in Varnavas, the induced dredge plume traveled up to ~ 750 m from the shoreline, featured by light attenuation coefficient (cp) maxima of 4.01-4.61 m-1 and suspended particulate matter (SPM) concentrations up to 6.01 mg L-1. After dredging the previous parameters reduced to the ambient seawater condition, ~ 0.45 m-1 and < 2.8 mg L-1 on average, respectively. Likewise in Aliveri, the dredging-associated sediment plume drifted offshore up to ~ 400 m from the shoreline, characterized by cp maxima of 2.11-4.86 m-1 and SPM concentrations up to 13.07 mg L-1. After the completion of the excavation and trenching activities, the cp and SPM values were restored to the pre-disturbance condition, ~ 0.6 m-1 and < 2.2 mg L-1 on average, respectively. The migration of the dredge plume in both dredging sites was accomplished through the formation of intermediate and benthic nepheloid layers, whose development and evolution were governed by seawater stratification and flow regime. The dredging-derived SPM levels appeared to increase within a distance of no more than 300 m from the shoreline (near-field zone). Based on data from the literature, this SPM enhancement together with the deposition of a post-dredging residual mud veneer in the near-field zone could deteriorate local marine biota, but in a reversible way.

Review of methods and applications of attenuation coefficient measurements with optical coherence tomography.

The optical attenuation coefficient (AC), an important tissue parameter that measures how quickly incident light is attenuated when passing through a medium, has been shown to enable quantitative analysis of tissue properties from optical coherence tomography (OCT) signals. Successful extraction of this parameter would facilitate tissue differentiation and enhance the diagnostic value of OCT. In this review, we discuss the physical and mathematical basis of AC extraction from OCT data, including current approaches used in modeling light scattering in tissue and in AC estimation. We also report on demonstrated clinical applications of the AC, such as for atherosclerotic tissue characterization, malignant lesion detection, and brain injury visualization. With current studies showing AC analysis as a promising technique, further efforts in the development of methods to accurately extract the AC and to explore its potential use for more extensive clinical applications are desired.

Differences in cyanobacterial strain responses to light and temperature reflect species plasticity.

Microcystis aeruginosa and Cylindrospermopsis raciborskii are two cyanobacterial species that dominate freshwaters globally. Multiple strains of each species with different physiology occur, however, many studies have focused only on one or two strains, limiting our understanding of both strain variation and characterisation of the species. Therefore, in this study we examined the variation in growth and morphology of multiple isolates of both species, isolated from two adjacent Australian reservoirs. Four M. aeruginosa strains (=isolates) (one colony-forming, three single-celled morphology) and eight C. raciborskii isolates (five with straight trichomes, three with coiled trichomes) were cultured individually in a factorial designed experiment with four light intensities (L: 10, 30, 50 and 100µmol photons m-2s-1) and two temperatures (T: 20 and 28°C). The specific growth rate (µ), cell volume, and final cell concentration was measured. The light attenuation coefficient (kj), a measure of self-shading, was calculated. The results showed that the intraspecific variation was greater than the interspecific variation. The µ of all isolates of M. aeruginosa and C. raciborskii ranged from 0.16 to 0.55d-1 and 0.15 to 0.70d-1, respectively. However, at a specific light and temperature the mean µ of all M. aeruginosa isolates and C. raciborskii isolates were similar. At the species level, M. aeruginosa had higher growth rates at higher light intensity but lower temperature (L100T20), while straight C. raciborskii had higher growth rates at lower light intensity but higher temperature (L50T28), and coiled C. raciborskii had higher growth rates at higher light intensity and higher temperature (L100T28). The final cell concentrations of M. aeruginosa were higher than C. raciborskii. However, C. raciborskii isolates had greater variation in µ, kj and cell volume than M. aeruginosa. kj varied with light and temperature, and decreased with surface-to-volume ratio within each species. kj was lower for M. aeruginosa compared to C. raciborskii as expected based on cell size, but interestingly, C. raciborskii coiled isolates had lower kj than the straight isolates suggesting lower effect of self-shading. This study highlights the extent of strain variation to environmental conditions and to species variability.