Enhancing Yield and Improving Grain Quality in Japonica Rice: Targeted EHD1 Editing via CRISPR-Cas9 in Low-Latitude Adaptation.

The "Indica to Japonica" initiative in China focuses on adapting Japonica rice varieties from the northeast to the unique photoperiod and temperature conditions of lower latitudes. While breeders can select varieties for their adaptability, the sensitivity to light and temperature often complicates and prolongs the process. Addressing the challenge of cultivating high-yield, superior-quality Japonica rice over expanded latitudinal ranges swiftly, in the face of these sensitivities, is critical. Our approach harnesses the CRISPR-Cas9 technology to edit the EHD1 gene in the premium northeastern Japonica cultivars Jiyuanxiang 1 and Yinongxiang 12, which are distinguished by their exceptional grain quality-increased head rice rates, gel consistency, and reduced chalkiness and amylose content. Field trials showed that these new ehd1 mutants not only surpass the wild types in yield when grown at low latitudes but also retain the desirable traits of their progenitors. Additionally, we found that disabling Ehd1 boosts the activity of Hd3a and RFT1, postponing flowering by approximately one month in the ehd1 mutants. This research presents a viable strategy for the accelerated breeding of elite northeastern Japonica rice by integrating genomic insights with gene-editing techniques suitable for low-latitude cultivation.

Accelerated marine carbon cycling forced by tectonic degassing over the Miocene Climate Optimum.

Global warming during the Miocene Climate Optimum (MCO, ∼17-14 million years ago) is associated with massive carbon emissions sourced from the flood basalt volcanism and ocean crustal production. However, the perturbation of tectonic carbon degassing on the interaction between climate change and carbon cycle remains unclear. Here, through time-evolutive phase analysis of new and published high-resolution benthic foraminiferal oxygen (δ18O) and carbon (δ13C) isotope records from the global ocean, we find that variations in the marine carbon cycle lead the climate-cryosphere system (δ13C-lead-δ18O) on 405,000-year eccentricity timescales during the MCO. This is in contrast to the previously reported climate-lead-carbon (δ18O-lead-δ13C) scenario during most of the Oligo-Miocene (∼34-6 million years ago). Further sensitivity analysis and model simulations suggest that the elevated atmospheric CO2 concentrations and the resulting greenhouse effect strengthened the low-latitude hydrological cycle during the MCO, accelerating the response of marine carbon cycle to eccentricity forcing. Tropical climate processes played a more important role in regulating carbon-cycle variations when Earth's climate was in a warm regime, as opposed to the dominant influence of polar ice-sheet dynamics during the Plio-Pleistocene (after ∼6 million years ago).

First fossil woods and palm stems from the mid-Paleocene of Myanmar and implications for biogeography and wood anatomy.

PREMISE: The rise of angiosperm-dominated tropical rainforests has been proposed to have occurred shortly after the Cretaceous-Paleogene transition. Paleocene fossil wood assemblages are rare yet provide important data for understanding these forests and whether their wood anatomical features can be used to document the changes that occurred during this transition. METHODS: We used standard techniques to section 11 fossil wood specimens of Paleocene-age, described the anatomy using standard terminology, and investigated their affinities to present-day taxa. RESULTS: We report here the first middle Paleocene fossil wood specimens from Myanmar, which at the time was near the equator and anchored to India. Some fossils share affinities with Arecaceae, Sapindales (Anacardiaceae, Meliaceae) and Moraceae and possibly Fabaceae or Lauraceae. One specimen is described as a new species and genus: Compitoxylon paleocenicum gen. et sp. nov. CONCLUSIONS: This assemblage reveals the long-lasting presence of these aforementioned groups in South Asia and suggests the early presence of multiple taxa of Laurasian affinity in Myanmar and India. The wood anatomical features of the dicotyledonous specimens reveal that both "modern" and "primitive" features (in a Baileyan scheme) are present with proportions similar to features in specimens from Paleocene Indian localities. Their anatomical diversity corroborates that tropical flora display "modern" features early in the history of angiosperms and that their high diversity remained steady afterward.

Temporal Evolution of Low-Latitude Plasma Blobs Identified From Multiple Measurements: ICON, GOLD, and Madrigal TEC.

Low-latitude plasma blobs have been studied since their first being reported in 1986. However, investigations on temporal evolution of a blob or on continental scale (>2,000 km) ionospheric contexts around it are relatively rare. Overcoming these limitations can help elucidate the blob generation mechanisms. On 21 January 2021, the Ionospheric Connection Explorer satellite encountered a typical low-latitude blob near the northeastern coast of South America. The event was collocated with a local enhancement in 135.6 nm nightglow at the poleward edge of an equatorial plasma bubble (EPB), as observed by the Global-scale Observations of the Limb and Disk (GOLD) imager. Total electron content maps from the Global Navigation Satellite System confirm the GOLD observations. Unlike typical medium-scale traveling ionospheric disturbances (MSTIDs), the blob had neither well-organized wavefronts nor moved in the southwest direction. Neither was the blob a monotonically decaying equatorial ionization anomaly crest past sunset. Rather, the blob varied following latitudinal expansion/contraction of EPBs at similar magnetic longitudes. The observational results support that mechanisms other than MSTIDs, such as EPBs, can also contribute to blob generation.

Driving forces for the growth of MIB-producing Planktothricoides raciborskii in a low-latitude reservoir.

In comparison with the middle- and high-latitude regions, the low-latitude regions are less associated with the occurrence of 2-methylisoborneol (MIB) episodes, since most of the previously identified MIB producers favor moderate/low light/temperature conditions. Here, we report a serious MIB outbreak over the period from Jul. 2018 to Jun. 2019 in a low-latitude reservoir with a mean annual water temperature of 25.6 °C. The MIB episode lasted for a long period, from Jul. 2018 to Jan. 2019, and Planktothricoides raciborskii was confirmed to be the main MIB producer. The growth characteristics of P. raciborskii were explored through both laboratory culturing and on-site verification experiments. The results indicated that this strain was not nutrient-sensitive at TN > 800 µg L-1 and TP > 10 µg L-1, but favored moderate light intensity (54 µmol photon m-2·s-1) and high temperature (30 °C). The two bloom-forming genera, Limnothrix and Aphanizomenon, favoring lower temperature and similar or relatively higher light intensity, showed much greater proliferation, about 13 folds (Limnothrix) and 58 folds (Aphanizomenon), from Dec. to Jun.; by contrast, the high water temperature (29.9 ± 2.8 °C) and light intensity (189.1 ± 87.6 µmol photon m-2·s-1) from Jul. to Nov. were not favorable to Limnothrix or Aphanizomenon, which might have created an opportunity for the growth of MIB-producing P. raciborskii. In addition, we also found that high temperature could promote the release of MIB from P. raciborskii cells, therefore exerting increased pressure on drinking water treatment processes.

Overcoming the genetic compensation response of soybean florigens to improve adaptation and yield at low latitudes.

The classical soybean (Glycine max) trait long juvenile (LJ) is essentially a reduction in sensitivity to short-day (SD) conditions for induction and completion of flowering, and has been introduced into soybean cultivars to improve yield in tropical environments. However, only one locus, J, is known to confer LJ in low-latitude varieties. Here, we defined two quantitative trait loci contributing to the LJ trait, LJ16.1 and LJ16.2, and identified them as the florigen (FT) homologs FT2a and FT5a, respectively. The two selected florigen variations both delay flowering time under SD conditions by repressing the floral meristem identity gene GmAPETALA1. Single mutants have a relatively subtle effect on flowering time and displayed a substantial genetic compensation response, but this was absent in ft2a ft5a double mutants, which showed an enhanced LJ phenotype that translated to higher yields under SD conditions. A survey of sequence diversity suggests that FT2a and FT5a variants have diverse origins and have played distinct roles as soybean spread to lower latitudes. Our results show that integration of variants in the florigen genes offers a strategy for customizing flowering time to adjust adaptation and improve crop productivity in tropical regions.

Role of low-latitude forests in modulating forest filter effect on a continental scale: Long-term simulation on PCB-153 in Chinese forests.

Forests are important compartments influencing the environmental fate of persistent organic pollutants (POPs). To illustrate the effect of forests on the regional cycle of POPs, a level IV fugacity fate and transport model coupled with a detailed dynamic-forest module was applied to simulate the long-term variations of PCB-153 in China, where forest coverage accounts for approximately one fifth of land area. In the scenarios with forests, atmospheric outflow from China was 69% of that in the scenario without forests due to the enhanced storage in soil, degradation, and leaching. Previous studies regarded high-latitude areas, such as the polar region and boreal forests, as environments capable of reducing mobility of PCB-153, and they act as sinks of POPs. This modeling result suggests that tropical and subtropical forests may also play a similar role despite high temperatures favoring volatilization. Unlike boreal forest, the low-latitude forests may reduce the overall lifetime of PCB-153 in China due to enhanced degradation in warmer and moist soils of the tropical and subtropical area. Given that approximately half of the global forests are located in tropical and subtropical regions, they can be important environments influencing the global geochemical cycle and distribution of POPs, hence deserving more scientific attention by modeling and empirical studies.

The effects and interaction of soybean maturity gene alleles controlling flowering time, maturity, and adaptation in tropical environments.

BACKGROUND: Soybean is native to the temperate zones of East Asia. Poor yields of soybean in West African countries may be partially attributed to inadequate adaptation of soybean to tropical environments. Adaptation will require knowledge of the effects of allelic combinations of major maturity genes (E1, E2, and E3) and stem architecture. The long juvenile trait (J) influences soybean flowering time in short, ~ 12 h days, which characterize tropical latitudes. Soybean plant architecture includes determinate or indeterminate stem phenotypes controlled by the Dt1 gene. Understanding the influence of these genetic components on plant development and adaptation is key to optimize phenology and improve soybean yield potential in tropical environments. RESULTS: Soybean lines from five recombinant inbred populations were developed that varied in their combinations of targeted genes. The soybean lines were field tested in multiple environments and characterized for days to flowering (DTF), days to maturity (DTM), and plant height in locations throughout northern Ghana, and allelic combinations were determined for each line for associating genotype with phenotype. The results revealed significant differences based on genotype for DTF and DTM and allowed the comparison of different variant alleles of those genes. The mutant alleles of J and E1 had significant impact on DTF and DTM, and alleles of those genes interacted with each other for DTF but not DTM. The Dt1 gene significantly influenced plant height but not DTF or DTM. CONCLUSIONS: This research identified major and minor effect alleles of soybean genes that can be combined to control DTF, DTM, and plant height in short day tropical environments in Ghana. These phenotypes contribute to adaptation to a low latitude environment that can be optimized in a soybean breeding program with targeted selection of desired allele combinations. The knowledge of the genetic control of these traits will enhance molecular breeding to produce optimally adapted soybean varieties targeted to tropical environments.

Study of the Equatorial and Low-Latitude Electrodynamic and Ionospheric Disturbances During the 22-23 June 2015 Geomagnetic Storm Using Ground-Based and Spaceborne Techniques.

We use a set of ground-based instruments (Global Positioning System receivers, ionosondes, magnetometers) along with data of multiple satellite missions (Swarm, C/NOFS, DMSP, GUVI) to analyze the equatorial and low-latitude electrodynamic and ionospheric disturbances caused by the geomagnetic storm of 22-23 June 2015, which is the second largest storm in the current solar cycle. Our results show that at the beginning of the storm, the equatorial electrojet (EEJ) and the equatorial zonal electric fields were largely impacted by the prompt penetration electric fields (PPEF). The PPEF were first directed eastward and caused significant ionospheric uplift and positive ionospheric storm on the dayside, and downward drift on the nightside. Furthermore, about 45 min after the storm commencement, the interplanetary magnetic field (IMF) Bz component turned northward, leading to the EEJ changing sign to westward, and to overall decrease of the vertical total electron content (VTEC) and electron density on the dayside. At the end of the main phase of the storm, and with the second long-term IMF Bz southward turn, we observed several oscillations of the EEJ, which led us to conclude that at this stage of the storm, the disturbance dynamo effect was already in effect, competing with the PPEF and reducing it. Our analysis showed no significant upward or downward plasma motion during this period of time; however, the electron density and the VTEC drastically increased on the dayside (over the Asian region). We show that this second positive storm was largely influenced by the disturbed thermospheric conditions.