Prevalence, clonal diversity, and antimicrobial resistance of hypervirulent Klebsiella pneumoniae and Klebsiella variicola clinical isolates in northern Japan.

OBJECTIVES: Hypervirulent Klebsiella pneumoniae (hvKp) and Klebsiella variicola (hvKv) cause hospital/community-acquired infections, often associated with antimicrobial resistance (AMR). This study aimed to investigate the molecular epidemiology of hvKp and hvKv in northern Japan. METHODS: A total of 500 K. pneumoniae and 421 K. variicola clinical isolates collected from August to December 2021 were studied. Prevalence of virulence factor-encoding genes, wzi sequence and associated K/KL type, sequence type (ST), and beta-lactamases and their types were characterized. RESULTS: Any virulence gene (rmpA, rmpA2, peg-344, iucA, iutA, and iroB) and/or magA was detected in 25% (n = 125) of K. pneumoniae and 1% (n = 5) of K. variicola. Among these hvKp/hvKv, 22 wzi types (18 and 4 types, respectively) and 24 STs (20 and 4 STs, respectively) were identified. Sequence types of hvKp were classified into some clonal groups (CGs), among which CG35, including six STs, was the most common (n = 59; 47%), followed by CG23, and CG65. ST268 (CG35) associated with wzi95-K20 or wzi720 was the dominant lineage (n = 43, 34%), while K1:ST23/ST249 and K2:ST65/ST86 accounted for 26% and 13% of hvKp, respectively. Extended-spectrum beta-lactamase (ESBL) genes (blaCTX-M-2, blaCTX-M-3, blaCTX-M-15, and blaCTX-M-27) were detected in only ST23 and CG35 (ST268 and ST412) hvKp. No isolate was resistant to carbapenems, without detection of the ESBL gene in K. variicola. Phylogenetically, wzi was differentiated into two main clusters of K. pneumoniae and K. variicola. A major clonal group CG347 was identified in K. variicola. CONCLUSION: Clonal structures were revealed for hvKp and hvKv clinical isolates with their AMR status in northern Japan.

Fauna of nocturnal moth species collected in a semi-natural grassland at Kanpu-zan in northern Japan.

Semi-natural grasslands, which house species-rich ecosystems, have rapidly declined since the twentieth century due to land-use practices, such as agricultural intensification and abandonment. Owing to their diversity and known habitat associations, nocturnal moths are considered as one of the most suitable organisms to be studied for assessing the dynamics of species composition as a result of changes in landscape management of semi-natural grasslands. The present study provides the foremost description of nocturnal moth fauna of the semi-natural grassland at Kanpu-zan, northern Japan. Moth population data from 1987 were compared to the data collected in 2018 to evaluate the impact of decline in grasslands on species-richness. During the field sampling in 2018, a total of 226 nocturnal moth species were detected, which was nearly two-thirds of the number of species recorded in 1987, i.e. 396 species. The values obtained in 2018 were found to be nearly constant for different sites. For both periods, it was evident that moth fauna in Kanpu-zan mainly consisted of species that relied on woody plants. Amongst the species which were only recorded in 1987, 107 species were generalists that fed on plants that are commonly distributed in Kanpu-zan. No moth species were recorded that depended upon endangered or extinct plant food sources. Thus, it is unlikely that the decline in the number of moth species in Kanpu-zan was due to the loss in plant food sources. Our results suggest that environmental factors other than food plants may have caused decline and changes in nocturnal moth fauna. More studies on various organism fauna are needed for understanding the conservation of semi-natural grassland, considering that the loss of semi-natural grasslands is one of the major threats to biodiversity.

Genetic relatedness of a new Japanese isolates of Alexandrium ostenfeldii bloom population with global isolates.

In recent years, blooms of toxic Alexandrium ostenfeldii strains have been reported from around the world. In 2013, the species formed a red tide in a shallow lagoon in western Japan, which was the first report of the species in the area. To investigate the genetic relatedness of Japanese A. ostenfeldii and global isolates, the full-length SSU, ITS and LSU sequences were determined, and phylogenetic analyses were conducted for isolates from western and northern Japan and from the Baltic Sea. Genotyping and microsatellite sequence comparison were performed to estimate the divergence and connectivity between the populations from western Japan and the Baltic Sea. In all phylogenetic analyses, the isolates from western Japan grouped together with global isolates from shallow and low saline areas, such as the Baltic Sea, estuaries on the east coast of U.S.A. and from the Bohai Sea, China. In contrast, the isolates from northern Japan formed a well-supported separate group in the ITS and LSU phylogenies, indicating differentiation between the Japanese populations. This was further supported by the notable differentiation between the sequences of western and northern Japanese isolates, whereas the lowest differentiation was found between the western Japanese and Chinese isolates. Microsatellite genotyping revealed low genetic diversity in the western Japanese population, possibly explained by a recent introduction to the lagoon from where it was detected. The red tide recorded in the shallow lagoon followed notable changes in the salinity of the waterbody and phytoplankton composition, potentially facilitating the bloom of A. ostenfeldii.