Improving contaminant removal and inhibiting CH4 and H2S emissions from septic tanks: Nitrified human urine as a source of electron acceptor.

Septic tanks are widely adopted in decentralized household wastewater treatment systems serving billions of people globally. Due to the lack of effective electron acceptors, insufficient nutrient removal and the emission of harmful gases, e. g. H2S, CH4, etc., are the common drawbacks. In the present work, we attempted to supplement nitrite into septic tanks as an electron acceptor, via nitrifying human urine source-separated from blackwater, to overcome these drawbacks. Partial or complete nitritation of source-separated urine was achieved in a sequencing batch reactor. The addition of nitrified urine into septic tanks improved organic and nitrogen removals in blackwater up to 90 % and 70 %, respectively. The emission of harmful gases from the septic tanks was stably diminished, with more than 75 % of CH4, CO2 and H2S reductions. Nitrite addition significantly reduced the abundance of hydrogenotrophic methanogens in septic tanks. Though the activity of sulfate-reducing bacteria recovered after the initial inhibition upon nitrite addition, the bio-generated H2S was retained in water since the increased wastewater pH after nitrite addition promoted the disassociation of H2S in aqueous solution.

Treatment techniques and resource recovery of source-separated urine: a bibliometric analysis and literature review.

Human urine, which is high in nutrients, acts as a resource as well as a contaminant. Indiscriminate urine discharge causes environmental pollution and wastes resources. To elucidate the research status and developmental trajectory of source-separated urine (SSU) treatment and recovery, this study was based on the Web of Science Core Collection (WOSCC) database and used the bibliometric software VOSviewer and CiteSpace to conduct a comprehensive and in-depth bibliometric analysis of the related literature in this field. The findings revealed a general upward trend in SSU treatment and recovery from 2000 to 2023. The compendium of 894 scholarly articles predominantly focused on the disciplines of Environmental Sciences, Environmental Engineering, and Water Resources. China and the USA emerged as the foremost contributors. Keyword co-occurrence mapping, clustering, and burst analysis have shown that the recovery of nitrogen and phosphorus from urine is currently the main focus, with future prospects leaning toward the retrieval of biochemicals and chemical energy. This study systematically categorizes and compares the developmental status, current advancements, and research progress in this field. The findings of this study provide a valuable reference for understanding developmental pathways in this field of research.

Concomitant urea stabilization and phosphorus recovery from source-separated fresh urine in magnesium anode-based peroxide-producing electrochemical cells.

In this study, we investigated the recovery of nitrogen (N) and phosphorus (P) from fresh source-separated urine with a novel electrochemical cell equipped with a magnesium (Mg) anode and carbon-based gas-diffusion cathode. Recovery of P, which exists primarily as phosphate (PO43-) in urine, was achieved through pH-driven precipitation. Maximizing N recovery requires simultaneous approaches to address urea and ammonia (NH3). NH3 recovery was possible through precipitation in struvite with soluble Mg supplied by the anode. Urea was stabilized with electrochemically synthesized hydrogen peroxide (H2O2) from the cathode. H2O2 concentrations and resulting urine pH were directly proportional to the applied current density. Concomitant NH3 and PO43- precipitation as struvite and urea stabilization via H2O2 electrosynthesis was possible at lower current densities, resulting in urine pH under 9.2. Higher current densities resulted in urine pH over 9.2, yielding higher H2O2 concentrations and more consistent stabilization of urea at the expense of NH3 recovery as struvite; PO43- precipitation still occurred but in the form of calcium phosphate and magnesium phosphate solids.

Subtle magnesium liberation of self-fabricated functional filler actuates highly efficient phosphorus removal from source-separated urine by SBBR.

Domestic wastewater source-separated treatment has attracted wide attention due to the efficiency improvement of sewage treatment systems, energy saving, resource reuse, and the construction and operation cost saving of pipeline networks. Nonetheless, the excess source-separated urine still demands further harmless treatment. Sequencing batch biofilm reactor (SBBR), a new type of composite biofilm reactor developed by filling different fillers into the sequential batch reactor (SBR) reactor, has higher pollutant removal performance and simpler operation and maintenance. However, the phosphorus removal ability of the SBBR filling with conventional fillers is still limited and needs further improvement. In this study, we developed two new fillers, the self-fabricated filler A and B (SFA/SFB), and compared their source-separated urine treatment performance. Long-term treatment experimental results demonstrated that the SBBR systems with different fillers had good removal performance on the COD and TN in the influent, and the removal rate increased with the increasing HRT. However, only the SBBR system with the SFA showed excellent PO43--P and TP removal performance, with the removal rates being 83.7 ± 11.9% and 77.3 ± 13.7% when the HRT was 1 d. Microbial community analysis results indicated that no special bacteria with strong phosphorus removal ability were present on the surface of the SFA. Adsorption experimental results suggested that the SFA had better adsorption performance for phosphorus than the SFB, but it could not always have stronger phosphorus adsorption and removal performance during long-term operation due to the adsorption saturation. Through a series of characterizations such as SEM, XRD, and BET, it was found that the SFA had a looser structure due to the use of different binder and production processes, and the magnesium in the SFA gradually released and reacted with PO43- and NH4+ in the source-separated urine to form dittmarite and struvite, thus achieving efficient phosphorus removal. This study provides a feasible manner for the efficient treatment of source-separated urine using the SBBR system with self-fabricated fillers.

Comparative evaluation of drying methods for struvite produced from electrocoagulated source-separated urine: Implications for quality, energy and cost-effectiveness.

Struvite precipitation from source-separated urine is crucial for waste utilization and sustainability. However, after precipitation, the high moisture content of struvite necessitates an additional drying process that can be costly and inefficient. In the present study, the performance of different drying methods-open sun drying, air drying, conventional drying (20-100 °C), and microwave drying (180-720 W) on the quality of struvite obtained from source-separated urine through electrocoagulation using Mg-Mg electrodes were evaluated. It was found that higher temperatures and power in the convective oven and microwave resulted in higher diffusivity (10-9-10-7 m2s-1), leading to reduced drying times. Different models were employed to comprehend the drying mechanism, and the one with the highest correlation coefficient (R2 = 0.99) and the lowest statistical values was selected. The key findings indicated that higher power and temperature levels were more cost-effective. However, characterization of the dried struvite using X-ray diffraction and Fourier-transformed infrared spectroscopy, disintegration of struvite crystals at temperatures above 60 °C in the conventional oven and 180 W in the microwave oven was observed. Based on the results, we conclude that sun drying is a cost-effective and environmentally friendly alternative for drying struvite without compromising its quality.

Microbial community analysis of membrane bioreactor incorporated with biofilm carriers and activated carbon for nitrification of urine.

The integration of powdered activated carbon and biofilm carriers in a membrane bioreactor (MBR) presents a promising approach to address the challenge of long hydraulic retention time (HRT) for nitrification of hydrolysed urine. This study investigated the effect of the incorporation in the MBR on microbial dynamics, focusing on dominant nitrifying bacteria. The results showed that significant shifts in microbial compositions were observed with the feed transition to full-strength urine and across different sludge growth forms. Remarkably, the nitrite-oxidizing bacteria Nitrospira were highly enriched in the suspended sludge. Simultaneously, ammonia-oxidizing bacteria, Nitrosococcaceae thrived in the attached biomass, showing a significant seven-fold increase in relative abundance compared to its suspended counterpart. Consequently, the incorporated MBR displayed 36% higher nitrification rate and 40% HRT reduction compared to the conventional MBR. This study provides valuable insights on the potential development of household or building scale on-site nutrient recovery from urine to fertiliser.

Electrochemical recovery of nutrients from human urine coupled with biogas upgrading.

This study explored the coupling of electrochemical nutrient recovery from human urine with biogas upgrading. Ammonia nitrogen-rich (≥300 mM) and alkaline (≥pH 9) hydrolyzed urine (HU) is a promising alternative CO2 solvent. Spent urine after biogas upgrading (SU), with neutralized pH and increased conductivity resulting from CO2 absorption, is advantageous over HU for recovering total ammonia nitrogen (TAN) through electro-concentration. Experiments using synthetic urine at varying applied current densities (13-77 A/m2) demonstrated effective TAN recovery from both HU and SU, with greater enrichment factors at higher currents (2.1-3.3-fold, 1.2-1.8 M TAN concentrate). Validation experiments using real urine at the optimized current density of 52 A/m2, considering energy consumption, exhibited superior TAN recovery and energy efficiency when using SU (3.7-fold enrichment, 1.6 M TAN concentrate; suitable for liquid fertilizer) compared to HU. These findings offer an advanced strategy for maximizing urine valorization, contributing to a circular economy.

Overcoming hydrogen loss in single-chamber microbial electrolysis cells by urine amendment.

The effective hydrogen production in single-chamber microbial electrolysis cells (MECs) has been seriously challenged by various hydrogen consumers resulting in substantial hydrogen loss. In previous studies, the total ammonia nitrogen (TAN) has been used to inhibit certain hydrogen-consuming microorganisms to enhance hydrogen production in fermentation. In this study, we explored the feasibility of using source-separated urine to overcome hydrogen loss in the MEC, with the primary component responsible being TAN generated via urea hydrolysis. Experimental results revealed that the optimal TAN concentration ranged from 1.17 g N/L to 1.75 g N/L. Within this range, the hydrogen production rate substantially improved from less than 100 L/(m3·d) up to 520 L/(m3·d), and cathode recovery efficiency and energy recovery efficiency were greatly enhanced, with the hydrogen percentage achieved over 95 % of the total gas volume, while maintaining uninterrupted electroactivity in the anode. Compared to using chemically added TAN, using source separated urine as the source of ammonia also showed the effect of overcoming hydrogen loss but with lower Coulombic efficiency due to the complex organic components. Pre-adaptation of the reactor with urea enhanced hydrogen production by nearly 60 %. This study demonstrated the effectiveness of TAN and urine in suppressing hydrogen loss, and the results are highly relevant to MECs treating real wastewater with high TAN concentrations, particularly human fecal and urine wastewater.

Enhanced strategies for phosphate recovery from urine by magnesium galvanic process.

Magnesium galvanic process (MGP) can be applied to recover phosphate from source-separated urine. However, information on how the urine matrix affects MGP performance is limited. Therefore, this study investigated the mechanism of phosphate recovery by MGP in synthetic and real urine matrixes. Our results showed that the major components in urine (i.e., NH4+, Cl-, and HCO3-) all exhibited acceleration effects on corrosion of Mg plate. However, the underlying action mechanism of each component was distinct. Ammonium facilitated the conversion from MgO to Mg(OH)2, chloride complexed with Mg2+ ions, and bicarbonate led to complexation as well as formation of MgCO3. Furthermore, our results revealed an interesting aspect where although bicarbonate alone accelerated the corrosion of Mg plate, its coexistence with other ions inhibited overall performance due to the blocking effect of formed MgCO3 on chloride penetration and reduction in free magnesium ion concentration. After elucidating the interaction of NH4+, Cl-, and HCO3- on the passive layer of the Mg plate, we proposed to pretreat urine with HCl, which resulted in a significant enhancement in current production and phosphate recovery. This improved MGP was further tested in a continuous flow reactor, which recovered over 95% of phosphate in real urine for more than 1 h. The phosphate precipitates were confirmed as high purity struvite. Generally, the improved MGP, which simultaneously produced Mg2+, dihydrogen, and electricity with no energy input, is a promising sustainable and green alternative for phosphate recovery from source-separated urine.

An integrated strategy for nutrient harvesting from hydrolyzed human urine as high-purity products: Tracking of precipitation transformation and precise regulation.

The nutrient recovery from source-separated urine is of great significance for a sustainable and closed nutrient loop. However, common urine-processing techniques have several constraints, including inefficient recovery, low product purity and incapability of simultaneously harvesting multiple nutrients. In this study, an integrated strategy of P precipitation and N stripping was first proposed to harvest nutrients from hydrolyzed human urine as high-purity products via precisely regulating Ca/P dosing ratio. Ca(OH)2 was utilized to trigger Ca-P precipitation and elevate pH level. Different from the previously reported conventional struvite method, P recovery was oriented to calcium phosphate. P harvesting behavior was investigated as a function of key factors including initial P concentration and the dosing ratio. A thermodynamic model was constructed to unveil the precipitation transformation mechanism and visualize P recovery for an enhanced controllability. For N harvesting, Ca(OH)2 was dosed to increase the pH of the urine to converts ammonium to ammonia. The resulting ammonia was stripped and then adsorbed by H2SO4 as high-purity ammonium sulfate. Moreover, the sulfate derived from acidification treatment was recovered as calcium sulfate in the interests of material recycling and mitigating secondary contaminations. Results exhibited P recovery efficiency could reach 100 % and purity for calcium phosphate could be above 90 % within a Ca/P ratio range of 1.67-2.0. Further boosting pH to 12, over 85 % of S and 95 % of N was retrieved. The comprehensive scheme provides an efficient approach towards the precise P and N harvesting from hydrolyzed urine and advances the knowledge of precipitation transformation mechanism.

Simultaneous elimination of antibiotics and antibiotics resistance genes in nitritation of source-separated urine.

Antibiotics in human urine could accelerate dissemination of antibiotics resistance genes (ARGs), posing potential threat to sewage. The nitritation of source-separated urine was a critical step to realize the urine resourcelization and nitrogen stabilization. However, the synergic control on antibiotics and ARGs during urine nitritation was unrevealed. This study investigated the removal profiles of five typical antibiotics and the shifts of microbial community and ARGs during stable nitritation. The result showed that sulfamethoxazole and roxithromycin were effectively eliminated with high removal efficiency of (95 ± 5) % and (90 ± 10) %, followed by enrofloxacin with removal efficiency of (60 ± 5) %, whereas trimethoprim and chloramphenicol showed low removal efficiency of less than 40 %. Ammonia oxidation bacteria and heterotrophic bacteria equally contributed to elimination of sulfamethoxazole with a high biodegradation rate of 0.1534 L/gVSS·h, while sorption and biodegradation jointly promoted other antibiotics removal. The total relative abundance of top 25 bacteria genera was decreased by 10 %. The total relative abundance of top 30 ARGs was decreased by more than 20 %, which was corresponding to the variation of bacterial community. The findings in this research would get a deeper insight into the eliminating antibiotics and controlling ARGs dissemination during nitritation of source-separated urine.

Unintentional release of antibiotics associated with nutrients recovery from source-separated human urine by biochar.

The use of biochar to recover nitrogen and phosphorus from wastewater especially source-separated human urine is attractive from both economic and environmental standpoints. The widespread use of pharmaceuticals has raised concerns as they are not fully metabolized and ended up in human urine. The objective of this study is to examine adsorption of antibiotics (azithromycin, ciprofloxacin, sulfamethoxazole, trimethoprim, and tetracycline) and nutrients (ammonium and phosphate) in source-separated human urine by biochar and subsequent desorption. Batch adsorption experiments were conducted using biochar prepared from oak wood (OW) and paper mill sludge (PMS) to elucidate the effects of adsorption time, pH, and adsorbent dose. The desorption of adsorbed nutrients and antibiotics was also investigated. While the nutrient adsorption was more favorable by the PMS biochar, antibiotic adsorption was more prolific by the OW biochar. Hydrogen bonding and π-π interaction were identified as potential adsorption mechanisms. Experimental results agree with the Freundlich isotherm and pseudo-second order models (except the OW biochar for the kinetics). The findings suggest that biochar can adsorb both nutrients (43.30-266.67 mg g-1) and antibiotics (246.70-389.0 µg g-1) simultaneously. Lower solution pH (<5) was better for antibiotic adsorption, while higher solution pH (≥5) favored nutrient recovery. Also, desorption of the antibiotics (maximum of 92.6% for trimethoprim) was observed and might arise in the environment with the applications of biochar for nutrient recovery from human urine and subsequently for soil quality improvement. The findings serve as a foundation for future research on adsorption-based methods for separating nutrients and antibiotics in aqueous solutions, particularly urine.

Simultaneous recovery of nutrients and power generation from source-separated urine based on bioelectrical coupling with the hydrophobic gas permeable tube system.

Source-separated urine has been regarded as a precious treasure on account of its rich nitrogen content and is suitable for fertilizer production. In this study, a novel bioelectrical coupling with hydrophobic gas permeable tube system (BGTS) was developed to treat urine, for removing organic matter, and recover nitrogen as value-added products in the form of nitrogen fertilizer. In the presence of the electric field, the hydrolysis process of urea in the anode chamber was accelerated, and the NH4+ driven by electric field force and concentration difference reached the cathode through the cation exchange membrane. The cathode made use of oxygen and electrons to produce alkali in situ to promote the conversion of NH4+ to NH3, which was straightforwardly absorbed in hydrophobic gas permeable tube circulating sulfuric acid solution, so as to promote the rapid migration of nitrogen and build an efficient dynamic recovery of nitrogen. After a 48-h cycle, the BGTS achieved a 95.28 ± 0.60% COD removal ratio, 91.60 ± 0.29% nitrogen recovery efficiency, and 3.48 kg m-3 ammonium sulfate fertilizer. Economic analysis indicated a profit of 5.75 $ associated with the utilization of the BGTS system for nitrogen fertilizer recovery from source separation in urine. Consequently, this study manifested that the BGTS system can recover nitrogen from human urine in a high-recovery and cost-effective way, and is of great significance in the sustainable recovery of nitrogen resources.

Fertiliser recovery from source-separated urine via membrane bioreactor and heat localized solar evaporation.

Urine with its abundant macronutrients (N-P-K) is an ideal resource for the production of fertiliser. However, the odor and pathogens in the raw urine must be removed to meet the public acceptance of urine collection systems and to enable its safe reuse as a fertiliser. In this work, real urine was collected and treated through a pilot-scale gravity-driven membrane bioreactor (GDMBR) to remove the malodorous organics and to nitrify almost 50% of the ammonia into nitrate. The stablised urine was subsequently distilled via low-cost heat localized solar evaporation (HLSE) to produce a non-odorous solid fertiliser. The developed HLSE with a small footprint can attract bulk solution into a vertical insulated space and quickly heat it up to 68 °C within 1 h. The HLSE process had vapour flux at 1.3 kg m-2 h-1 as well as high solar to vapour conversion efficiency at 87%. Based on the EDX mapping and XRD analysis, the generated crystals are mainly NaNO3, NH4Cl, NaCl, NH4H2PO4 and K2HPO4, which are ideal nutrients for vegetation. In this study, the produced urine-derived fertilisers have a better performance on the growth of the leafy basil than the all-purpose commercial fertilisers. Generally, the GDMBR-HLSE is a promising cost-effective and green technology for nutrients recovery from urine.

Bipolar Membrane Electrodialysis for Ammonia Recovery from Synthetic Urine: Experiments, Modeling, and Performance Analysis.

Recovering nitrogen from source-separated urine is an important part of the sustainable nitrogen management. A novel bipolar membrane electrodialysis with membrane contactor (BMED-MC) process is demonstrated here for efficient recovery of ammonia from synthetic source-separated urine (∼3772 mg N L-1). In a BMED-MC process, electrically driven water dissociation in a bipolar membrane simultaneously increases the pH of the urine stream and produces an acid stream for ammonia stripping. With the increased pH of urine, ammonia transports across the gas-permeable membrane in the membrane contactor and is recovered by the acid stream as ammonium sulfate that can be directly used as fertilizer. Our results obtained using batch experiments demonstrate that the BMED-MC process can achieve 90% recovery. The average ammonia flux and the specific energy consumption can be regulated by varying the current density. At a current density of 20 mA cm-2, the energy required to achieve a 67.5% ammonia recovery in a 7 h batch mode is 92.8 MJ kg-1 N for a bench-scale system with one membrane stack and can approach 25.8 MJ kg-1 N for large-scale systems with multiple membrane stacks, with an average ammonia flux of 2.2 mol m-2 h-1. Modeling results show that a continuous BMED-MC process can achieve a 90% ammonia recovery with a lower energy consumption (i.e., 12.5 MJ kg-1 N). BMED-MC shows significant potential for ammonia recovery from source-separated urine as it is relatively energy-efficient and requires no external acid solution.

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer.

Recovery of nutrients from source-separated urine can truncate our dependency on synthetic fertilizers, contributing to more sustainable food production. Urine-derived fertilizers have been successfully applied in soilless cultures. However, little is known about the adaptation of the plant to the nutrient environment. This study investigated the impact of urine-derived fertilizers on plant performance and the root-associated bacterial community of hydroponically grown lettuce (Lactuca sativa L.). Shoot biomass, chlorophyll, phenolic, antioxidant, and mineral content were associated with shifts in the root-associated bacterial community structures. K-struvite, a high-performing urine-derived fertilizer, supported root-associated bacterial communities that overlapped most strongly with control NPK fertilizer. Contrarily, lettuce performed poorly with electrodialysis (ED) concentrate and hydrolyzed urine and hosted distinct root-associated bacterial communities. Comparing the identified operational taxonomic units (OTU) across the fertilizer conditions revealed strong correlations between specific bacterial genera and the plant physiological characteristics, salinity, and NO3-/NH4+ ratio. The root-associated bacterial community networks of K-struvite and NPK control fertilized plants displayed fewer nodes and node edges, suggesting that good plant growth performance does not require highly complex ecological interactions in hydroponic growth conditions.

Concentrating nutrients and recovering water and energy from source separated urine using osmotic microbial fuel cell.

This work presents the use of osmotic microbial fuel cell (OsMFC), for the first time, to concentrate nutrients and recover water and energy from source separated urine. Four sets of concentration of fresh urine as feed and NaCl as draw were examined: 10% fresh urine vs 0.25 M NaCl; 10% fresh urine vs 2 M NaCl; fresh urine vs 0.25 M NaCl; and fresh urine vs 2 M NaCl. A maximum water flux of 14.27 LMH was attained when 10% of fresh urine and 2 M of NaCl were used as feed and draw solutions, respectively. Additionally, OsMFC concentrates ~99% of TOC, TN, NH4+, and 100% of PO43- and NO3- from urine at the feed side. Polarization studies indicate that the power generation in OsMFC is related to the rate of change of conductivity and the initial conductivity of the anolyte. The maximum (0.12187 W m-3) and minimum power densities (5.3372 × 10-4 W m-3) were obtained for the conditions of fresh urine vs 0.25 M NaCl and 10% fresh urine vs 0.25 M NaCl, respectively. The study shows that OsMFC is an effective pretreatment process to concentrate nutrients from urine by recovering water and energy, simultaneously.

Waste or Gold? Bioelectrochemical Resource Recovery in Source-Separated Urine.

In recent years, source-separated human urine has been highlighted as an effective resource for energy and nutrient recovery. However, even though several technologies exist for resource recovery, they have not been widely implemented. Among these technologies, bioelectrochemical systems (BESs) hold promise as technically and economically interesting alternatives for sustainable resource recovery from source-separated urine. Here, we review the resource recovery performance of BESs, including microbial fuel cells (MFCs) and microbial electrolysis cells (MECs), fed with source-separated urine over the past decade, and suggest an effective path forward toward their widespread implementation.

Removal of sulfonamide antibiotics and human metabolite by biochar and biochar/H2O2 in synthetic urine.

Source-separated urine has been increasingly regarded as a promising alternative waste-stream for effectively removing pharmaceuticals and human metabolites. This study investigated the removal of sulfonamide antibiotics, one category among the most frequently detected antibiotics in the environment, by biochar and biochar/H2O2 in synthetic urine matrix. The adsorption and degradation of four parent sulfonamide antibiotics, including sulfamethoxazole, sulfadiazine, sulfamethazine, sulfadimethoxine, and one human metabolite, N4-acetyl-sulfamethoxazole (together referred as SAs) were investigated. Biochar derived from cotton straw was applied as adsorbent for SAs and catalyst for H2O2. Results showed that the adsorption of SAs was inhibited in urine compared with that in phosphate buffer solution. Bicarbonate in urine placed major influence. Langmuir isotherm model well described the adsorption process in both buffer and urine matrices. Adsorption and desorption rates were estimated by a kinetic model, which well fitted the removal of SAs from aqueous phase at various biochar doses. The adsorption of SAs on biochar was due to multiple forces, in which van der Waals forces and hydrophobicity played major roles in distinguishing the sorption behavior of different SAs. To destruct the SAs, H2O2 was added with biochar. Except for N4-acetyl-sulfamethoxazole, all the parent SAs can be degraded in urine matrix. Carbonate radical, produced from the activation of peroxymonocarbonate by biochar, was proposed to be the major contributing reactive species in biochar/H2O2 system in urine matrix.

Fate of the Urinary Tract Virus BK Human Polyomavirus in Source-Separated Urine.

Human polyomaviruses are emerging pathogens that infect a large percentage of the human population and are excreted in urine. Consequently, urine that is collected for fertilizer production often has high concentrations of polyomavirus genes. We studied the fate of infectious double-stranded DNA (dsDNA) BK human polyomavirus (BKPyV) in hydrolyzed source-separated urine with infectivity assays and quantitative PCR (qPCR). Although BKPyV genomes persisted in the hydrolyzed urine for long periods of time (T90 [time required for 90% reduction in infectivity or gene copies] of >3 weeks), the viruses were rapidly inactivated (T90 of 1.1 to 11 h) in most of the tested urine samples. Interestingly, the infectivity of dsDNA bacteriophage surrogate T3 (T90 of 24 to 46 days) was much more persistent than that of BKPyV, highlighting a major shortcoming of using bacteriophages as human virus surrogates. Pasteurization and filtration experiments suggest that BKPyV virus inactivation was due to microorganism activity in the source-separated urine, and SDS-PAGE Western blots showed that BKPyV protein capsid disassembly is concurrent with inactivation. Our results imply that stored urine does not pose a substantial risk of BKPyV transmission, that qPCR and infectivity of the dsDNA surrogate do not accurately depict BKPyV fate, and that microbial inactivation is driven by structural elements of the BKPyV capsid.IMPORTANCE We demonstrate that a common urinary tract virus has a high susceptibility to the conditions in hydrolyzed urine and consequently would not be a substantial exposure route to humans using urine-derived fertilizers. The results have significant implications for understanding virus fate. First, by demonstrating that the dsDNA (double-stranded DNA) genome of the polyomavirus lasts for weeks despite infectivity lasting for hours to days, our work highlights the shortcomings of using qPCR to estimate risks from unculturable viruses. Second, commonly used dsDNA surrogate viruses survived for weeks under the same conditions that BK polyomavirus survived for only hours, highlighting issues with using virus surrogates to predict how human viruses will behave in the environment. Finally, our mechanistic inactivation analysis provides strong evidence that microbial activity drives rapid virus inactivation, likely through capsid disassembly. Overall, our work underlines how subtle structural differences between viruses can greatly impact their environmental fate.