Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora).

BACKGROUND: Crofton weed (Ageratina adenophora) is one of the most hazardous invasive plant species, which causes serious economic losses and environmental damages worldwide. However, the sequence resource and genome information of A. adenophora are rather limited, making phylogenetic identification and evolutionary studies very difficult. Here, we report the complete sequence of the A. adenophora chloroplast (cp) genome based on Illumina sequencing. METHODOLOGY/PRINCIPAL FINDINGS: The A. adenophora cp genome is 150, 689 bp in length including a small single-copy (SSC) region of 18, 358 bp and a large single-copy (LSC) region of 84, 815 bp separated by a pair of inverted repeats (IRs) of 23, 755 bp. The genome contains 130 unique genes and 18 duplicated in the IR regions, with the gene content and organization similar to other Asteraceae cp genomes. Comparative analysis identified five DNA regions (ndhD-ccsA, psbI-trnS, ndhF-ycf1, ndhI-ndhG and atpA-trnR) containing parsimony-informative characters higher than 2%, which may be potential informative markers for barcoding and phylogenetic analysis. Repeat structure, codon usage and contraction of the IR were also investigated to reveal the pattern of evolution. Phylogenetic analysis demonstrated a sister relationship between A. adenophora and Guizotia abyssinica and supported a monophyly of the Asterales. CONCLUSION: We have assembled and analyzed the chloroplast genome of A. adenophora in this study, which was the first sequenced plastome in the Eupatorieae tribe. The complete chloroplast genome information is useful for plant phylogenetic and evolutionary studies within this invasive species and also within the Asteraceae family.

[Ecological adaptability of different provenance Eupatorium adenophorum Spreng].

By using reciprocal transplant method, Eupatorium adenophorum Spreng. seedlings of five different provenances were reciprocally transplanted into six different sites in Yunnan Province, with the survival rate, plant height, branch number, biomass, flower number per plant, and seed production measured during the period from April 2007 to May 2008. The seedlings growth and reproductive traits of different provenance E. adenophorum all showed strong plasticity to environmental conditions. With increasing latitude and altitude of transplant site, plant height, branch number, biomass, flower number per plant, and seed production of different provenance E. adenophorum decreased, and the differences in these growth and reproductive traits were significant among the transplant sites. However, there were no significant differences in these traits among different provenance E. adenophorum. Provenance and transplant site had no significant interactive effects on the above-mentioned traits except seed production. At each site, the survival rate, growth potential, and reproductive capability of local provenance E. adenophorum didn't have any superiority, illustrating that the success in the invasion of E. adenophorum in Yunnan Province was mainly due to the phenotypic plasticity of the plant, while local adaptability only played lesser important role.

[Genetic variations among populations of Ageratina adenophora from different areas, investigated by inter-simple sequence repeat markers].

Crofton weed, Ageratina adenophora,a troublesome weed in the world,is an invasive organism in China. Genetic diversity of thirty-two Chinese populations of A. adenophora from different areas was analyzed with the inter-simple sequence repeat (ISSR) technique. It indicated that its genetic diversity was rich. Nei's gene diversity and Shannon's information index were 0.235 and 0.372 at species level respectively. Genetic variation of Crofton weed mainly existed in the population, and about 34.5% of the total variance was attributable to population divergence and 65.5% to individual differences within populations. The Mantel Z-statistic test showed that the genetic distance between populations generally increased with geographic distance (r=0.542,p< 0.001),which indicated that isolation by distance is one of the blocks of gene flow of A. adenophora. Genetic diversity level of Crofton weed had the trend to decrease along with the increased altitude (r=0.368,P<0.001), and the mean of Nei's gene diversity and Shannon's diversity indices both decreased with the increased altitude.