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1.
Biochem Biophys Res Commun ; 547: 89-95, 2021 04 02.
Artigo em Inglês | MEDLINE | ID: mdl-33610045

RESUMO

The cytoplasmic region of the γ chain of the high-affinity receptor for IgE (FcεRI) contains a consensus sequence termed the immunoreceptor tyrosine-based activation motif (ITAM). Phosphorylation of the two tyrosine residues (N-terminal Y47 and C-terminal Y58) in the ITAM sequence is crucial for the recruitment and activation of Syk, a cytoplasmic tyrosine kinase with central signaling roles in mast cells. Using a reconstitution system in which individual tyrosine-to-phenylalanine substituted γ chains were expressed in γ-chain-deficient mast cells, we previously reported differential dephosphorylation of these tyrosines. Herein, we developed monoclonal antibodies highly specific to the phosphorylated Y47 and Y58 residues, which enables monitoring their phosphorylation under more physiological conditions. Using these antibodies, preferential dephosphorylation of Y58 following FcεRI stimulation was confirmed. Furthermore, Y58 is potentially more susceptible to phosphorylation than is Y47. Consistent with this, an in vitro kinase assay using these phospho-specific antibodies demonstrated that the Src family kinase Lyn, which is primarily responsible for ITAM phosphorylation, phosphorylates Y58 more efficiently than Y47. These results indicate that Y58 is more susceptible to dephosphorylation and phosphorylation than is Y47. Because a phosphate group on Y58 is more important for Syk binding than is a phosphate group on Y47, the preferential phosphorylation and dephosphorylation of Y58 may contribute to the fine tuning of Syk activity by promoting rapid recruitment and reducing excessive activation.


Assuntos
Anticorpos Monoclonais/metabolismo , Anticorpos Fosfo-Específicos/metabolismo , Motivo de Ativação do Imunorreceptor Baseado em Tirosina , Mastócitos/imunologia , Receptores de IgG/metabolismo , Quinase Syk/metabolismo , Tirosina/metabolismo , Animais , Anticorpos Monoclonais/imunologia , Anticorpos Fosfo-Específicos/imunologia , Células Cultivadas , Mastócitos/metabolismo , Camundongos Endogâmicos C57BL , Fosforilação , Receptores de IgG/química , Transdução de Sinais , Tirosina/química
2.
MAbs ; 11(7): 1206-1218, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31311408

RESUMO

Post-translational modifications, such as the phosphorylation of tyrosines, are often the initiation step for intracellular signaling cascades. Pan-reactive antibodies against modified amino acids (e.g., anti-phosphotyrosine), which are often used to assay these changes, require isolation of the specific protein prior to analysis and do not identify the specific residue that has been modified (in the case that multiple amino acids have been modified). Phosphorylation state-specific antibodies (PSSAs) developed to recognize post-translational modifications within a specific amino acid sequence can be used to study the timeline of modifications during a signal cascade. We used the FcεRI receptor as a model system to develop and characterize high-affinity PSSAs using phage and yeast display technologies. We selected three ß-subunit antibodies that recognized: 1) phosphorylation of tyrosines Y218 or Y224; 2) phosphorylation of the Y228 tyrosine; and 3) phosphorylation of all three tyrosines. We used these antibodies to study the receptor activation timeline of FcεR1 in rat basophilic leukemia cells (RBL-2H3) upon stimulation with DNP24-BSA. We also selected an antibody recognizing the N-terminal phosphorylation site of the γ-subunit (Y65) of the receptor and applied this antibody to evaluate receptor activation. Recognition patterns of these antibodies show different timelines for phosphorylation of tyrosines in both ß and γ subunits. Our methodology provides a strategy to select antibodies specific to post-translational modifications and provides new reagents to study mast cell activation by the high-affinity IgE receptor, FcεRI.


Assuntos
Anticorpos Fosfo-Específicos/metabolismo , Anticorpos/isolamento & purificação , Basófilos/fisiologia , Receptores de IgE/metabolismo , Leveduras/fisiologia , Animais , Anticorpos Fosfo-Específicos/química , Linhagem Celular , Técnicas de Visualização da Superfície Celular , Fosforilação , Processamento de Proteína Pós-Traducional , Ratos , Tirosina/imunologia , Tirosina/metabolismo
3.
PLoS One ; 11(2): e0150000, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26915047

RESUMO

Cytoplasmic Polyadenylation Element Binding proteins (CPEBs) are a family of polyadenylation factors interacting with 3'UTRs of mRNA and thereby regulating gene expression. Various functions of CPEBs in development, synaptic plasticity, and cellular senescence have been reported. Four CPEB family members of partially overlapping functions have been described to date, each containing a distinct alternatively spliced region. This region is highly conserved between CPEBs-2-4 and contains a putative phosphorylation consensus, overlapping with the exon seven of CPEB3. We previously found CPEBs-2-4 splice isoforms containing exon seven to be predominantly present in neurons, and the isoform expression pattern to be cell type-specific. Here, focusing on the alternatively spliced region of CPEB3, we determined that putative neuronal isoforms of CPEB3 are phosphorylated. Using a new phosphospecific antibody directed to the phosphorylation consensus we found Protein Kinase A and Calcium/Calmodulin-dependent Protein Kinase II to robustly phosphorylate CPEB3 in vitro and in primary hippocampal neurons. Interestingly, status epilepticus induced by systemic kainate injection in mice led to specific upregulation of the CPEB3 isoforms containing exon seven. Extensive analysis of CPEB3 phosphorylation in vitro revealed two other phosphorylation sites. In addition, we found plethora of potential kinases that might be targeting the alternatively spliced kinase consensus site of CPEB3. As this site is highly conserved between the CPEB family members, we suggest the existence of a splicing-based regulatory mechanism of CPEB function, and describe a robust phosphospecific antibody to study it in future.


Assuntos
Hipocampo/metabolismo , Neurônios/metabolismo , Isoformas de Proteínas/metabolismo , Proteínas de Ligação a RNA/metabolismo , Processamento Alternativo , Animais , Anticorpos Fosfo-Específicos/metabolismo , Proteína Quinase Tipo 2 Dependente de Cálcio-Calmodulina/metabolismo , Células HEK293 , Humanos , Camundongos , Camundongos Endogâmicos C57BL , Fosforilação
4.
Curr Protoc Pharmacol ; 69: 2.13.1-2.13.26, 2015 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-26344213

RESUMO

G protein-coupled receptors (GPCRs) are rapidly phosphorylated following agonist occupation in a process that mediates receptor uncoupling from its cognate G protein, a process referred to as desensitization. In addition, this process provides a mechanism by which receptors can engage with arrestin adaptor molecules and couple to downstream signaling pathways. The importance of this regulatory process has been highlighted recently by the understanding that ligands can direct receptor signaling along one pathway in preference to another, the phenomenon of signaling bias that is partly mediated by the phosphorylation status or phosphorylation barcode of the receptor. Methods to determine the phosphorylation status of a GPCR in vitro and in vivo are necessary to understand not only the physiological mechanisms involved in GPCR signaling, but also to fully examine the signaling properties of GPCR ligands. This unit describes detailed methods for determining the overall phosphorylation pattern on a receptor (the phosphorylation barcode), as well as mass spectrometry approaches that can define the precise sites that become phosphorylated. These techniques, coupled with the generation and characterization of receptor phosphorylation-specific antibodies, provide a full palate of techniques necessary to determine the phosphorylation status of any given GPCR subtype.


Assuntos
Proteínas Heterotriméricas de Ligação ao GTP/metabolismo , Farmacologia/métodos , Fosfopeptídeos/metabolismo , Processamento de Proteína Pós-Traducional , Receptores Acoplados a Proteínas G/metabolismo , Transdução de Sinais , Animais , Anticorpos Fosfo-Específicos/metabolismo , Western Blotting , Cromatografia Líquida de Alta Pressão , Cromatografia em Camada Fina , Proteínas Heterotriméricas de Ligação ao GTP/agonistas , Proteínas Heterotriméricas de Ligação ao GTP/antagonistas & inibidores , Proteínas Heterotriméricas de Ligação ao GTP/química , Humanos , Ligantes , Mapeamento de Peptídeos , Fosfopeptídeos/química , Fosfopeptídeos/genética , Fosforilação/efeitos dos fármacos , Processamento de Proteína Pós-Traducional/efeitos dos fármacos , Receptores Acoplados a Proteínas G/agonistas , Receptores Acoplados a Proteínas G/antagonistas & inibidores , Receptores Acoplados a Proteínas G/química , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/metabolismo , Transdução de Sinais/efeitos dos fármacos , Espectrometria de Massas em Tandem
5.
FEBS Lett ; 589(16): 2131-5, 2015 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-26143374

RESUMO

This study demonstrated the feasibility and benefit of an antibody-based experimental approach to identify microRNA functional targets from hundreds of predicted genes using miR-206 as an example. Using a receptor tyrosine kinase (RTK) antibody array, we identified 7 phosphorylated RTKs that were significantly differentially regulated after miR-206-mimic transfection. We then focused on MET, the most varied RTK, and bioinformatically constructed a MET-centred network using computationally predicted miR-206 targets. Within this network, we analyzed two validated targets, PAX3 and SNX2, and one candidate target, EIF4E, may account for the inhibitory effect of miR-206 on MET phosphorylation. Luciferase and Western-blot assays indicated that EIF4E was a direct target of miR-206. This concept may also be applicable for other microRNAs and other antibody array platforms.


Assuntos
Anticorpos Fosfo-Específicos/metabolismo , Fator de Iniciação 4E em Eucariotos/antagonistas & inibidores , MicroRNAs/metabolismo , Regiões Promotoras Genéticas , Proteínas Proto-Oncogênicas c-met/antagonistas & inibidores , Interferência de RNA , Especificidade de Anticorpos , Sítios de Ligação , Linhagem Celular Tumoral , Biologia Computacional , Fator de Iniciação 4E em Eucariotos/genética , Fator de Iniciação 4E em Eucariotos/metabolismo , Genes Reporter , Humanos , Proteínas Mutantes/antagonistas & inibidores , Proteínas Mutantes/metabolismo , Fator de Transcrição PAX3 , Fatores de Transcrição Box Pareados/antagonistas & inibidores , Fatores de Transcrição Box Pareados/genética , Fatores de Transcrição Box Pareados/metabolismo , Fosforilação , Análise Serial de Proteínas , Processamento de Proteína Pós-Traducional , Proteômica/métodos , Proteínas Proto-Oncogênicas c-met/genética , Proteínas Proto-Oncogênicas c-met/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Nexinas de Classificação/antagonistas & inibidores , Nexinas de Classificação/genética , Nexinas de Classificação/metabolismo
6.
Methods Mol Biol ; 1306: 135-46, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25930699

RESUMO

Tyrosine (Tyr) phosphorylation plays an essential role in signaling in animal systems, but the relative contribution of Tyr phosphorylation to plant signal transduction has, until recently, remained an open question. One of the major issues hampering the analysis is the low abundance of Tyr phosphorylation and therefore underrepresentation in most mass spec-based proteomic studies. Here, we describe a working approach to selectively enrich Tyr-phosphorylated peptides from complex plant tissue samples. We describe a detailed protocol that is based on immuno-affinity enrichment step using an anti-phospho-tyrosine (pTyr)-specific antibody. This single enrichment strategy effectively enriches pTyr-containing peptides from complex total plant cell extracts, which can be measured by LC-MS/MS without further fractionation or enrichment.


Assuntos
Arabidopsis/metabolismo , Cromatografia de Afinidade/métodos , Fosfopeptídeos/isolamento & purificação , Tirosina/imunologia , Anticorpos Fosfo-Específicos/metabolismo , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/isolamento & purificação , Proteínas de Arabidopsis/metabolismo , Fosfopeptídeos/química , Fosfopeptídeos/metabolismo , Fosforilação , Proteômica/métodos , Transdução de Sinais , Tirosina/química
7.
J Cell Biochem ; 116(3): 386-97, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25290246

RESUMO

Pulmonary arterial hypertension (PAH) is characterized by increased pulmonary vascular smooth muscle contraction and proliferation. Here, we analyze genome-wide mRNA expression in human pulmonary arterial smooth muscle cells (HPASMC) isolated from three control, three hereditary (HPAH), and three idiopathic PAH (IPAH) subjects using the Affymetrix Human Gene ST 1.0 chip. The microarray analysis reveals the expression of 537 genes in HPAH and 1024 genes in IPAH changed compared with control HPASMC. Among those genes, 227 genes show similar directionality of expression in both HPAH and IPAH HPASMC. Ingenuity™ Pathway Analysis (IPA) suggests that many of those genes are involved in cellular growth/proliferation and cell cycle regulation and that signaling pathways such as the mitotic activators, polo-like kinases, ATM signaling are activated under PAH conditions. Furthermore, the analysis demonstrates downregulated mRNA expression of certain vasoactive receptors such as bradykinin receptor B2 (BKB2R). Using real time PCR, we verified the downregulated BKB2R expression in the PAH cells. Bradykinin-stimulated calcium influx is also decreased in PAH PASMC. IPA also identified transcriptional factors such p53 and Rb as downregulated, and FoxM1 and Myc as upregulated in both HPAH and IPAH HPASMC. The decreased level of phospho-p53 in PAH cells was confirmed with a phospho-protein array; and we experimentally show a dysregulated proliferation of both HPAH and IPAH PASMC. Together, the microarray experiments and bioinformatics analysis highlight an aberrant proliferation and cell cycle regulation in HPASMC from PAH subjects. These newly identified pathways may provide new targets for the treatment of both hereditary and idiopathic PAH.


Assuntos
Hipertensão Pulmonar Primária Familiar/genética , Miócitos de Músculo Liso/metabolismo , Análise de Sequência com Séries de Oligonucleotídeos , Artéria Pulmonar/patologia , Transdução de Sinais/genética , Anticorpos Fosfo-Específicos/metabolismo , Estudos de Casos e Controles , Ciclo Celular/genética , Proliferação de Células , Células Cultivadas , Hipertensão Pulmonar Primária Familiar/patologia , Perfilação da Expressão Gênica , Regulação da Expressão Gênica , Humanos , Miócitos de Músculo Liso/patologia , Fenótipo , Fosforilação , Análise de Componente Principal , Artéria Pulmonar/metabolismo , Artéria Pulmonar/fisiopatologia , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Reação em Cadeia da Polimerase em Tempo Real , Receptor Tipo 1 de Angiotensina/genética , Receptor Tipo 1 de Angiotensina/metabolismo , Receptor B2 da Bradicinina/genética , Receptor B2 da Bradicinina/metabolismo , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Proteínas Supressoras de Tumor/genética , Proteínas Supressoras de Tumor/metabolismo
8.
PLoS One ; 8(8): e71697, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23977114

RESUMO

The protein TIN2 is a member of telomere-binding protein complex that serves to cap and protect mammalian chromosome ends. As a number of proteins in this complex are phosphorylated in a cell cycle-dependent manner, we investigated whether TIN2 is modified by phosphorylation as well. We performed phospho-proteomic analysis of human TIN2, and identified two phosphorylated residues, serines 295 and 330. We demonstrated that both these sites were phosphorylated during mitosis in human cells, as detected by Phos-tag reagent and phosphorylation-specific antibodies. Phosphorylation of serines 295 and 330 appeared to be mediated, at least in part, by the mitotic kinase RSK2. Specifically, phosphorylation of TIN2 at both these residues was increased upon expression of RSK2 and reduced by an inhibitor of the RSK family of kinases. Moreover, RSK2 phosphorylated TIN2 in vitro. The identification of these specifically timed post-translational events during the cell cycle suggests a potential mitotic regulation of TIN2 by phosphorylation.


Assuntos
Ciclo Celular , Proteínas de Ligação a Telômeros/metabolismo , Sequência de Aminoácidos , Anticorpos Fosfo-Específicos/metabolismo , Ciclo Celular/efeitos dos fármacos , Células HeLa , Humanos , Espectrometria de Massas , Mitose/efeitos dos fármacos , Dados de Sequência Molecular , Nocodazol/farmacologia , Fosforilação/efeitos dos fármacos , Fosfosserina/metabolismo , Pteridinas/farmacologia , Proteínas Quinases S6 Ribossômicas 90-kDa/antagonistas & inibidores , Proteínas Quinases S6 Ribossômicas 90-kDa/metabolismo , Proteínas de Ligação a Telômeros/química
9.
Nat Commun ; 4: 1766, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23612307

RESUMO

Euglenoid flagellates have striped surface structures comprising pellicles, which allow the cell shape to vary from rigid to flexible during the characteristic movement of the flagellates. In Euglena gracilis, the pellicular strip membranes are covered with paracrystalline arrays of a major integral membrane protein, IP39, a putative four-membrane-spanning protein with the conserved sequence motif of the PMP-22/EMP/MP20/Claudin superfamily. Here we report the three-dimensional structure of Euglena IP39 determined by electron crystallography. Two-dimensional crystals of IP39 appear to form a striated pattern of antiparallel double-rows in which trimeric IP39 units are longitudinally polymerised, resulting in continuously extending zigzag-shaped lines. Structural analysis revealed an asymmetric molecular arrangement in the trimer, and suggested that at least four different interactions between neighbouring protomers are involved. A combination of such multiple interactions would be important for linear strand formation of membrane proteins in a lipid bilayer.


Assuntos
Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Multimerização Proteica , Proteínas de Protozoários/química , Proteínas de Protozoários/metabolismo , Sequências Repetitivas de Aminoácidos , Anticorpos Fosfo-Específicos/metabolismo , Cristalização , Cristalografia por Raios X , Euglena gracilis/metabolismo , Proteínas de Membrana/ultraestrutura , Modelos Moleculares , Fosfotirosina/metabolismo , Ligação Proteica , Subunidades Proteicas , Proteínas de Protozoários/ultraestrutura , Homologia Estrutural de Proteína
10.
J Cell Sci ; 126(Pt 6): 1333-44, 2013 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-23378027

RESUMO

Myotubularin-related 2 (MTMR2) is a 3-phosphoinositide lipid phosphatase with specificity towards the D-3 position of phosphoinositol 3-phosphate [PI(3)P] and phosphoinositol 3,5-bisphosphate lipids enriched on endosomal structures. Recently, we have shown that phosphorylation of MTMR2 on Ser58 is responsible for its cytoplasmic sequestration and that a phosphorylation-deficient variant (S58A) targets MTMR2 to Rab5-positive endosomes resulting in PI(3)P depletion and an increase in endosomal signaling, including a significant increase in ERK1/2 activation. Using in vitro kinase assays, cellular MAPK inhibitors, siRNA knockdown and a phosphospecific-Ser58 antibody, we now provide evidence that ERK1/2 is the kinase responsible for phosphorylating MTMR2 at position Ser58, which suggests that the endosomal targeting of MTMR2 is regulated through an ERK1/2 negative feedback mechanism. Surprisingly, treatment with multiple MAPK inhibitors resulted in a MTMR2 localization shift from Rab5-positive endosomes to the more proximal APPL1-positive endosomes. This MTMR2 localization shift was recapitulated when a double phosphorylation-deficient mutant (MTMR2 S58A/S631A) was characterized. Moreover, expression of this double phosphorylation-deficient MTMR2 variant led to a more sustained and pronounced increase in ERK1/2 activation compared with MTMR2 S58A. Further analysis of combinatorial phospho-mimetic mutants demonstrated that it is the phosphorylation status of Ser58 that regulates general endosomal binding and that the phosphorylation status of Ser631 mediates the endosomal shuttling between Rab5 and APPL1 subtypes. Taken together, these results reveal that MTMR2 compartmentalization and potential subsequent effects on endosome maturation and endosome signaling are dynamically regulated through MAPK-mediated differential phosphorylation events.


Assuntos
Endossomos/metabolismo , Proteína Quinase 1 Ativada por Mitógeno/metabolismo , Proteína Quinase 3 Ativada por Mitógeno/metabolismo , Transporte Proteico , Proteínas Tirosina Fosfatases não Receptoras/metabolismo , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Anticorpos Fosfo-Específicos/metabolismo , MAP Quinases Reguladas por Sinal Extracelular/antagonistas & inibidores , Células HEK293 , Células HeLa , Humanos , Imidazóis/farmacologia , Sistema de Sinalização das MAP Quinases/efeitos dos fármacos , Sistema de Sinalização das MAP Quinases/genética , Mutação/genética , Fosforilação/genética , Transporte Proteico/efeitos dos fármacos , Transporte Proteico/genética , Proteínas Tirosina Fosfatases não Receptoras/genética , Piridinas/farmacologia , RNA Interferente Pequeno/genética , Proteínas rab5 de Ligação ao GTP/metabolismo
11.
Reprod Fertil Dev ; 24(4): 531-42, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22541541

RESUMO

Protein tyrosine phosphorylation in sperm is associated with capacitation in several mammalian species. Although tyrosine phosphorylated proteins have been demonstrated in cryopreserved sperm, indicating capacitation-like changes during cryopreservation, these changes have not yet been quantified objectively. We monitored tyrosine phosphorylation, intracellular calcium and sperm kinematics throughout the cryopreservation process, and studied the relationships among them in boar spermatozoa. Sperm kinetics changed significantly during cryopreservation: curvilinear velocity, average path velocity and straight line velocity all decreased significantly (P < 0.05). While the percentage of sperm with high intracellular calcium declined (P < 0.05), global phosphorylation increased significantly (P < 0.01). Specifically, cooling to 5 °C induced phosphorylation in the spermatozoa. After cooling, a 32-kDa protein not observed in fresh semen appeared and was consistently present throughout the cryopreservation process. While the level of expression of this phosphoprotein decreased after addition of the second extender, frozen-thawed spermatozoa showed an increased expression. The proportion of sperm cells with phosphorylation in the acrosomal area also increased significantly (P < 0.05) during cryopreservation, indicating that phosphorylation might be associated with capacitation-like changes. These results provide the first quantitative evidence of dynamic changes in the subpopulation of boar spermatozoa undergoing tyrosine phosphorylation during cryopreservation.


Assuntos
Sinalização do Cálcio , Criopreservação/veterinária , Fosfoproteínas/metabolismo , Preservação do Sêmen/veterinária , Espermatozoides , Sus scrofa , Tirosina/metabolismo , Acrossomo/metabolismo , Animais , Animais Endogâmicos , Anticorpos Fosfo-Específicos/metabolismo , Western Blotting/veterinária , Citosol/metabolismo , Eletroforese em Gel de Poliacrilamida/veterinária , Citometria de Fluxo/veterinária , Cinética , Masculino , Fosforilação , Processamento de Proteína Pós-Traducional , Análise do Sêmen/veterinária , Espermatozoides/citologia , Espermatozoides/metabolismo
12.
ACS Chem Biol ; 7(1): 44-51, 2012 Jan 20.
Artigo em Inglês | MEDLINE | ID: mdl-22148577

RESUMO

This year (2012) marks the 50th anniversary of the discovery of protein histidine phosphorylation. Phosphorylation of histidine (pHis) is now widely recognized as being critical to signaling processes in prokaryotes and lower eukaryotes. However, the modification is also becoming more widely reported in mammalian cellular processes and implicated in certain human disease states such as cancer and inflammation. Nonetheless, much remains to be understood about the role and extent of the modification in mammalian cell biology. Studying the functional role of pHis in signaling, either in vitro or in vivo, has proven devilishly hard, largely due to the chemical instability of the modification. As a consequence, we are currently handicapped by a chronic lack of chemical and biochemical tools with which to study histidine phosphorylation. Here, we discuss the challenges associated with studying the chemical biology of pHis and review recent progress that offers some hope that long-awaited biochemical reagents for studying this elusive posttranslational modification (PTM) might soon be available.


Assuntos
Histidina/análogos & derivados , Fosfoproteínas/metabolismo , Fosfotransferases/metabolismo , Processamento de Proteína Pós-Traducional , Sequência de Aminoácidos , Animais , Anticorpos Fosfo-Específicos/metabolismo , Eucariotos , Histidina/análise , Histidina/química , Histidina/metabolismo , Humanos , Isomerismo , Espectroscopia de Ressonância Magnética , Mamíferos , Espectrometria de Massas , Dados de Sequência Molecular , Organofosfonatos/metabolismo , Fosfoproteínas/química , Fosforilação , Células Procarióticas , Estabilidade Proteica , Transdução de Sinais
13.
Methods Cell Biol ; 103: 203-20, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21722805

RESUMO

The analysis of signaling pathways based on combinations of phospho-specific antibodies is now a well-recognized flow cytometry technique. Despite its wide-ranging potential in the fields of biology, industry, and medicine, it has been relatively slow to gain widespread use, and is often considered to be technically challenging. In this chapter, we detail protocols developed in our laboratory for monitoring signaling pathways in blood samples based on combinations of phospho-specific antibodies. Emphasis is placed on clinical application. The assays have a modular design, with a core protocol for whole blood fixation and lysis, a suite of agents that can acutely activate or inhibit the different signaling pathways, and a wide range of phospho-specific antibodies as the readout.


Assuntos
Anticorpos Fosfo-Específicos/metabolismo , Citometria de Fluxo/métodos , Citometria por Imagem/métodos , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Leucemia Mieloide Aguda , Fosfoproteínas/metabolismo , Transdução de Sinais , Coloração e Rotulagem/métodos , Anticorpos Fosfo-Específicos/análise , Fixadores/química , Corantes Fluorescentes/análise , Humanos , Peptídeos e Proteínas de Sinalização Intercelular/farmacologia , Peptídeos e Proteínas de Sinalização Intracelular/agonistas , Peptídeos e Proteínas de Sinalização Intracelular/antagonistas & inibidores , Leucemia Mieloide Aguda/metabolismo , Leucemia Mieloide Aguda/patologia , Lipopolissacarídeos/farmacologia , Redes e Vias Metabólicas , Metanol/química , Fosfoproteínas/análise , Fosforilação , Inibidores de Proteínas Quinases/farmacologia , Acetato de Tetradecanoilforbol/farmacologia , Fixação de Tecidos
14.
J Biomol Screen ; 16(8): 925-31, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21788394

RESUMO

Aurora A kinase is a key regulator of mitosis, which is upregulated in several human cancers, making it a potential target for anticancer therapeutics. Consequently, robust medium- to high-throughput cell-based assays to measure Aurora A kinase activity are critical for the development of small-molecule inhibitors. Here the authors compare measurement of the phosphorylation of two Aurora A substrates previously used in high-content screening Aurora A assays, Aurora A itself and TACC3, with a novel substrate Lats2. Using antibodies directed against phosphorylated forms of Aurora A (pThr288), P-TACC3 (pSer558), and P-Lats2 (pSer83), the authors investigate their suitability in parallel for development of a cell-based assay using several reference Aurora inhibitors: MLN8054, VX680, and AZD1152-HQPA. They validate a combined assay of target-specific phosphorylation of Lats2 at the centrosome and an increase in mitotic index as a measure of Aurora A activity. The assay is both sensitive and robust and has acceptable assay performance for high-throughput screening or potency estimation from concentration-response assays. It has the advantage that it can be carried out using a commercially available monoclonal antibody against phospho-Lats2 and the widely available Cellomics ArrayScan HCS reader and thus represents a significant addition to the tools available for the identification of Aurora A specific inhibitors.


Assuntos
Anticorpos Fosfo-Específicos/análise , Antineoplásicos/análise , Ensaios de Triagem em Larga Escala , Inibidores de Proteínas Quinases/análise , Proteínas Serina-Treonina Quinases/antagonistas & inibidores , Proteínas Serina-Treonina Quinases/análise , Proteínas Supressoras de Tumor/análise , Neoplasias do Colo do Útero/tratamento farmacológico , Anticorpos Fosfo-Específicos/metabolismo , Antineoplásicos/química , Antineoplásicos/farmacologia , Aurora Quinases , Automação Laboratorial , Centrossomo/efeitos dos fármacos , Centrossomo/metabolismo , Feminino , Células HeLa , Humanos , Proteínas Associadas aos Microtúbulos/análise , Proteínas Associadas aos Microtúbulos/metabolismo , Mitose/efeitos dos fármacos , Imagem Molecular , Organofosfatos/farmacologia , Fosforilação , Piperazinas/farmacologia , Inibidores de Proteínas Quinases/química , Inibidores de Proteínas Quinases/farmacologia , Proteínas Serina-Treonina Quinases/metabolismo , Quinazolinas/farmacologia , Bibliotecas de Moléculas Pequenas , Proteínas Supressoras de Tumor/metabolismo , Neoplasias do Colo do Útero/enzimologia , Neoplasias do Colo do Útero/patologia
15.
Methods Mol Biol ; 746: 237-49, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21607860

RESUMO

Phosphorylation of G protein-coupled receptors (GPCRs) is one of the most prominent post-translation modifications mediated by agonist stimulation. This process has been shown to result not only in receptor desensitisation but also, via the recruitment of arrestin adaptor proteins, to promote receptor coupling to numerous signalling pathways. Furthermore, there is now a growing body of evidence suggesting that GPCRs may employ phosphorylation as a mechanism to regulate their cell-type-specific signalling, hence generating tissue-specific functions. These advances have resulted partly from improved methods used in the determination of phospho-acceptor sites on GPCRs and improved analysis of the consequences of phosphorylation. This chapter aims to describe the methods used in our laboratory for the investigation of site-specific phosphorylation of the M3-muscarinic receptor. These methods could easily be applied in the study of other receptors.


Assuntos
Mapeamento de Peptídeos/métodos , Receptores Acoplados a Proteínas G/metabolismo , Anticorpos Fosfo-Específicos/metabolismo , Espectrometria de Massas , Fosforilação
16.
Methods Mol Biol ; 753: 183-213, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21604124

RESUMO

Phosphoproteomics, the systematic study of protein phosphorylation events and cell signaling networks in cells and tissues, is a rapidly evolving branch of functional proteomics. Current phosphoproteomics research provides a large toolbox of strategies and protocols that may assist researchers to reveal key regulatory events and phosphorylation-mediated processes in the cell and in whole organisms. We present an overview of sensitive and robust analytical methods for phosphopeptide analysis, including calcium phosphate precipitation and affinity enrichment methods such as IMAC and TiO(2). We then discuss various tandem mass spectrometry approaches for phosphopeptide sequencing and quantification, and we consider aspects of phosphoproteome data analysis and interpretation. Efficient integration of these stages of phosphoproteome analysis is highly important to ensure a successful outcome of large-scale experiments for studies of phosphorylation-mediated protein regulation.


Assuntos
Espectrometria de Massas/métodos , Fosfopeptídeos/análise , Fosfoproteínas/química , Proteômica/métodos , Ácidos/química , Sequência de Aminoácidos , Animais , Anticorpos Fosfo-Específicos/metabolismo , Cromatografia por Troca Iônica/métodos , Bases de Dados de Proteínas , Técnicas Eletroquímicas/métodos , Dados de Sequência Molecular , Fosfopeptídeos/genética , Fosfoproteínas/genética , Fosfoproteínas/metabolismo , Fosforilação , Proteoma/análise , Transdução de Sinais , Titânio/química
17.
Cytometry A ; 79(6): 470-6, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21595014

RESUMO

By virtue of superior preservation of proteins and nucleic acids the zinc salt-based fixatives (ZBF) has been proposed as an alternative to precipitants and cross-linking fixatives in histopathology. It was recently reported that ZBF is compatible with analysis of cell surface immunophenotype and detection of intracellular epitopes by flow cytometry. The aim of this study was to explore whether ZBF is also compatible with the detection of DNA damage response assessed by phospho-specific antibodies (Abs) detecting phosphorylation of the key proteins of that pathway. DNA damage in human pulmonary adenocarcinoma A549 cells was induced by treatment with the DNA topoisomerase I inhibitor camptothecin and phosphorylation of histone H2AX on Ser139 (γH2AX) and of ATM on Ser1981 was detected with phospho-specific Abs; cellular fluorescence was measured by laser scanning cytometry (LSC). The sensitivity and accuracy of detection of H2AX and ATM phosphorylation concurrent with the detection of DNA replication by EdU incorporation and "click chemistry" was found in ZBF fixed cells to be comparable to that of cell fixed in formaldehyde. The accuracy of DNA content measurement as evident from the resolution of DNA content frequency histograms of cells stained with DAPI was somewhat better in ZBF- than in formaldehyde-fixed cells. The pattern of chromatin condensation revealed by the intensity of maximal pixel of DAPI that allows one to identify mitotic and immediately post-mitotic cells by LSC was preserved after ZBF fixation. ZBF fixation was also compatible with the detection of γH2AX foci considered to be the hallmarks of induction of DNA double-strand breaks. Analysis of cells by flow cytometry revealed that ZBF fixation of lymphoblastoid TK6 cells led to about 60 and 33% higher intensity of the side and forward light scatter, respectively, compared to formaldehyde fixed cells.


Assuntos
Anticorpos Fosfo-Específicos/metabolismo , Cromatina/efeitos dos fármacos , Fixadores/química , Histocitoquímica/métodos , Sais/química , Coloração e Rotulagem/métodos , Zinco/química , Anticorpos Fosfo-Específicos/imunologia , Apoptose/efeitos dos fármacos , Proteínas Mutadas de Ataxia Telangiectasia , Camptotecina/farmacologia , Proteínas de Ciclo Celular/metabolismo , Linhagem Celular Tumoral , Cromatina/química , Cromatina/ultraestrutura , Dano ao DNA/efeitos dos fármacos , Replicação do DNA/efeitos dos fármacos , DNA Topoisomerases Tipo I/metabolismo , Proteínas de Ligação a DNA/metabolismo , Fluorescência , Formaldeído/química , Histonas/metabolismo , Humanos , Indóis/análise , Citometria de Varredura a Laser , Fosforilação/efeitos dos fármacos , Proteínas Serina-Treonina Quinases/metabolismo , Inibidores da Topoisomerase I/farmacologia , Proteínas Supressoras de Tumor/metabolismo
18.
Mol Cell Biol ; 31(14): 2787-801, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21576368

RESUMO

The mammalian target of rapamycin complex 1 (mTORC1) functions as an environmental sensor to promote critical cellular processes such as protein synthesis, cell growth, and cell proliferation in response to growth factors and nutrients. While diverse stimuli regulate mTORC1 signaling, the direct molecular mechanisms by which mTORC1 senses and responds to these signals remain poorly defined. Here we investigated the role of mTOR phosphorylation in mTORC1 function. By employing mass spectrometry and phospho-specific antibodies, we demonstrated novel phosphorylation on S2159 and T2164 within the mTOR kinase domain. Mutational analysis of these phosphorylation sites indicates that dual S2159/T2164 phosphorylation cooperatively promotes mTORC1 signaling to S6K1 and 4EBP1. Mechanistically, S2159/T2164 phosphorylation modulates the mTOR-raptor and raptor-PRAS40 interactions and augments mTORC1-associated mTOR S2481 autophosphorylation. Moreover, mTOR S2159/T2164 phosphorylation promotes cell growth and cell cycle progression. We propose a model whereby mTOR kinase domain phosphorylation modulates the interaction of mTOR with regulatory partner proteins and augments intrinsic mTORC1 kinase activity to promote biochemical signaling, cell growth, and cell cycle progression.


Assuntos
Ciclo Celular/fisiologia , Proliferação de Células , Proteínas/metabolismo , Transdução de Sinais/fisiologia , Serina-Treonina Quinases TOR/metabolismo , Proteínas Adaptadoras de Transdução de Sinal/genética , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Sequência de Aminoácidos , Animais , Anticorpos Fosfo-Específicos/metabolismo , Células HEK293 , Humanos , Espectrometria de Massas/métodos , Alvo Mecanístico do Complexo 1 de Rapamicina , Dados de Sequência Molecular , Complexos Multiproteicos , Mutagênese Sítio-Dirigida , Fosforilação , Proteínas/genética , Proteína Regulatória Associada a mTOR , Alinhamento de Sequência , Serina-Treonina Quinases TOR/genética
19.
Mol Syst Biol ; 7: 482, 2011 Apr 12.
Artigo em Inglês | MEDLINE | ID: mdl-21487401

RESUMO

The functional impact of multisite protein phosphorylation can depend on both the numbers and the positions of phosphorylated sites-the global pattern of phosphorylation or 'phospho-form'-giving biological systems profound capabilities for dynamic information processing. A central problem in quantitative systems biology, therefore, is to measure the 'phospho-form distribution': the relative amount of each of the 2(n) phospho-forms of a protein with n-phosphorylation sites. We compared four potential methods-western blots with phospho-specific antibodies, peptide-based liquid chromatography (LC) and mass spectrometry (MS; pepMS), protein-based LC/MS (proMS) and nuclear magnetic resonance spectroscopy (NMR)-on differentially phosphorylated samples of the well-studied mitogen-activated protein kinase Erk2, with two phosphorylation sites. The MS methods were quantitatively consistent with each other and with NMR to within 10%, but western blots, while highly sensitive, showed significant discrepancies with MS. NMR also uncovered two additional phosphorylations, for which a combination of pepMS and proMS yielded an estimate of the 16-member phospho-form distribution. This combined MS strategy provides an optimal mixture of accuracy and coverage for quantifying distributions, but positional isomers remain a challenging problem.


Assuntos
MAP Quinase Quinase 2/metabolismo , Fosforilação , Sequência de Aminoácidos , Animais , Anticorpos Fosfo-Específicos/metabolismo , Western Blotting/métodos , Cromatografia Líquida/métodos , Espectroscopia de Ressonância Magnética/métodos , Espectrometria de Massas/métodos , Dados de Sequência Molecular , Peptídeos/metabolismo , Xenopus
20.
Br J Pharmacol ; 164(2): 298-307, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21449911

RESUMO

BACKGROUND AND PURPOSE: Morphine activates the µ-opioid receptor without causing its rapid endocytosis. In contrast, full agonists such as [d-Ala(2) -MePhe(4) -Gly-ol]enkephalin (DAMGO) or etonitazene stimulate a rapid and profound internalization. However, the detailed molecular events underlying the differential regulation of receptor trafficking by distinct opioid agonists remain incompletely understood. EXPERIMENTAL APPROACH: Here, we have generated phosphosite-specific antibodies for the carboxyl-terminal residues serine 363 (Ser363), threonine 370 (Thr370) and serine 375 (Ser375), which enabled us to selectively detect either the Ser363-, Thr370- or Ser375-phosphorylated form of the receptor. KEY RESULTS: We showed that agonist-induced phosphorylation occurs at Thr370 and Ser375, whereas Ser363 is constitutively phosphorylated in the absence of agonist. We further demonstated that DAMGO and etonitazene stimulated the phosphorylation of both Thr370 and Ser375. In contrast, morphine promoted the phosphorylation of Ser375, but failed to stimulate Thr370 phosphorylation. In the presence of DAMGO, Ser375 phosphorylation occurred at a faster rate than phosphorylation of Thr370, indicating that Ser375 is the primary site of agonist-dependent phosphorylation. Activation of PKC by phorbol 12-myristate 13-acetate increased receptor phosphorylation only on Thr370, but not on Ser375, indicating that Thr370 can also undergo heterologous PKC-mediated phosphorylation. We also showed that µ receptor dephosphorylation can occur within minutes at or near the plasma membrane, and that agonist removal is a major prerequisite for Thr370 and Ser375 dephosphorylation. CONCLUSIONS AND IMPLICATIONS: Together, we showed for the first time that distinct agonists stimulate site-specific patterns of phosphorylation, which are intimately related to their ability to elicit µ-opioid receptor sequestration. LINKED ARTICLE: This article is commented on by Kelly, pp. 294-297 of this issue. To view this commentary visit http://dx.doi.org/10.1111/j.1476-5381.2011.01387.x.


Assuntos
Analgésicos Opioides/farmacologia , Anticorpos Fosfo-Específicos/metabolismo , Receptores Opioides mu/metabolismo , Sequência de Aminoácidos , Animais , Benzimidazóis/farmacologia , Ala(2)-MePhe(4)-Gly(5)-Encefalina/farmacologia , Células HEK293 , Humanos , Morfina/farmacologia , Fosforilação , Coelhos , Receptores Opioides mu/química
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