RESUMO
Ganoderma is a cosmopolitan genus of wood-decaying basidiomycetous macrofungi that can rot the roots and/or lower trunk. Among the standing trees, their presence often indicates that a hazard assessment may be necessary. These bracket fungi are commonly known for the crust-like upper surfaces of their basidiocarps and formation of white rot. Six species occur in central European urban habitats. Several of them, such as Ganoderma adspersum, G. applanatum, G. resinaceum and G. pfeifferi, are most hazardous fungi causing extensive horizontal stem decay in urban trees. Therefore, their early identification is crucial for correct management of trees. In this paper, a fast technique is tested for the determination of phytopathologically important urban macrofungi using fuzzy interference system of Sugeno type based on 13 selected traits of 72 basidiocarps of six Ganoderma species and compared to the ITS sequence based determination. Basidiocarps features were processed for the following situations: At first, the FIS of Sugeno 2 type (without basidiospore sizes) was used and 57 Ganoderma basidiocarps (79.17%) were correctly determined. Determination success increased to 96.61% after selecting basidiocarps with critical values (15 basidiocarps). These undeterminable basidiocarps must be analyzed by molecular methods. In a case, that basidiospore sizes of some basidiocarps were known, a combination of Sugeno 1 (31 basidiocarps with known basidiospore size) and Sugeno 2 (41 basidiocarps with unknown basidiospore size) was used. 84.72% of Ganoderma basidiocarps were correctly identified. Determination success increased to 96.83% after selecting basidiocarps with critical values (11 basidiocarps).
Assuntos
Fungos/classificação , Ganoderma/classificação , Madeira/microbiologia , Carpóforos/classificação , Esporos Fúngicos/classificação , Árvores/microbiologiaRESUMO
Four ergot species (Claviceps ripicola, C. quebecensis, C. perihumidiphila, and C. occidentalis) were recognized based on analyses of DNA sequences from multiple loci, including two housekeeping genes, RNA polymerase II second largest subunit (RPB2), and translation elongation factor 1-α (TEF1-α), and a single-copy ergot alkaloid synthesis gene (easE) encoding chanoclavine I synthase oxidoreductase. Morphological features, ergot alkaloid production, and pathogenicity on five common cereal crops of each species were evaluated and presented in taxonomic descriptions. A synoptic key was also provided for identification.
Assuntos
Claviceps/classificação , Claviceps/genética , Claviceps/patogenicidade , Alcaloides de Claviceps/biossíntese , Alcaloides de Claviceps/genética , Carpóforos/citologia , Doenças das Plantas , Esporos Fúngicos/citologia , Canadá , Produtos Agrícolas/microbiologia , Carpóforos/classificação , Genes Fúngicos , Filogenia , Poaceae/microbiologia , Análise de Sequência de DNA , Esporos Fúngicos/classificaçãoRESUMO
Following a late fall wildfire in 2016 in the Great Smoky Mountains National Park, pyrophilous fungi in burn zones were documented over a 2-y period with respect to burn severity and phenology. Nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) barcodes were obtained to confirm morphological evaluations. Forty-one taxa of Ascomycota and Basidiomycota were identified from burn sites and categorized as fruiting only in response to fire or fruiting enhanced by fire. Twenty-two species of Pezizales (Ascomycota) were among the earliest to form ascomata in severe burn zones, only one of which had previously been documented in the Great Smoky Mountains National Park. Nineteen species of Basidiomycota, primarily Agaricales, were also documented. Among these, only five species (Coprinellus angulatus, Gymnopilus decipiens, Lyophyllum anthracophilum, Pholiota carbonicola, and Psathyrella pennata) were considered to be obligate pyrophilous taxa, but fruiting of two additional taxa (Hygrocybe conica and Mycena galericulata) was clearly enhanced by fire. Laccaria trichodermophora was an early colonizer of severe burn sites and persisted through the winter of 2017 and into spring and summer of 2018, often appearing in close association with Pinus pungens seedlings. Fruiting of pyrophilous fungi peaked 4-6 mo post fire then diminished, but some continued to fruit up to 2.5 y after the fire. In all, a total of 27 previously unrecorded taxa were added to the All Taxa Biodiversity Inventory (ATBI) database (~0.9%). Most pyrophilous fungi identified in this study are either cosmopolitan or have a Northern Hemisphere distribution, but cryptic endemic lineages were detected in Anthracobia and Sphaerosporella. One new combination, Hygrocybe spadicea var. spadicea f. odora, is proposed.
Assuntos
Biodiversidade , Fungos/crescimento & desenvolvimento , Parques Recreativos , Incêndios Florestais , DNA Fúngico/genética , DNA Ribossômico/genética , Carpóforos/classificação , Carpóforos/genética , Carpóforos/crescimento & desenvolvimento , Fungos/classificação , Fungos/genética , Filogenia , Pinus/microbiologia , Estados UnidosRESUMO
Phallus atrovolvatus is a wild edible mushroom found in Thailand. Three strains of Ph. atrovolvatus (DOAP-1, DOAP-2, and DOAP-3) were collected from forests in Central Thailand. Some requirements for mycelial growth were obtained in different media. Potato dextrose agar was determined as the best medium to support mycelial growth (83.50 mm after incubation for 7 days). Molecular phylogenetic analyses based on the sequence of internal transcribed spacers (ITS1 and ITS4) confirmed DOAP-1 species status within Phallaceae as Ph. atrovolvatus with high levels of similarity at 99.34%. Antioxidant properties of hot water extract from the fruiting body of three isolates (CMP-1, CMP-2, and CMP-3) were also evaluated. Highest free radical scavenging ability was found in CMP-1 (94.94% at 2.0 mg/mL) whereas crude mushroom extracts exhibited very strong ferrous-ion chelating effects of 99.16% at 10 mg/ mL. Results indicating that all CMP isolates from Ph. atrovolvatus possess excellent antioxidant properties from natural sources.
Assuntos
Antioxidantes/química , Basidiomycota/crescimento & desenvolvimento , Basidiomycota/genética , Extratos Vegetais/química , Antioxidantes/isolamento & purificação , Basidiomycota/química , Basidiomycota/classificação , Sequestradores de Radicais Livres/química , Carpóforos/química , Carpóforos/classificação , Carpóforos/genética , Carpóforos/crescimento & desenvolvimento , Micélio/química , Micélio/classificação , Micélio/genética , Micélio/crescimento & desenvolvimento , Filogenia , Extratos Vegetais/isolamento & purificação , TailândiaRESUMO
Auricularia auricula-judae is an edible mushroom and a traditional medicine in China as well as the fourth largest cultivated mushroom species in the world. Here for the first time, we present comparative transcriptome analyses of the fruiting bodies of three morphologically distinguishable A. auricula-judae cultivated varieties (Wujin, smooth; Banjin, partially wrinkled; and Quanjin, fully wrinkled) collected from Jilin Province, China. Biological triplicates were performed to determine the expression levels of 13,937 unigenes. Among them, only 13 unigenes were annotated to A. auricula-judae, highlighting the lack of publicly available reference sequences for this economically important species. Principal component analysis (PCA) determined that the gene expression profile of Quanjin was unique when compared to those of Banjin and Wujin. Such relationships were further supported by analyses of annotated and unannotated unigenes, differentially expressed unigenes, gene ontology functions, and the family of peroxidase genes. Using the KEGG database, significant alternations in biological pathways were detected among the three cultivars. This work contributes a large set of A. auricula-judae sequences to public database, establishes the relationships among major cultivars, and provides molecular guidance for breeding and cultivation.
Assuntos
Basidiomycota/classificação , Basidiomycota/genética , Carpóforos/classificação , Carpóforos/genética , Perfilação da Expressão Gênica , Variação Genética , Filogenia , China , Genes Fúngicos , Anotação de Sequência MolecularRESUMO
BACKGROUND: One of the main problems in the button mushroom industry is the rapid deterioration of fruit bodies after harvest. Today, nanotechnology has become a more reliable technique to improve the quality of products in food packaging. In the present study, the effectiveness of chitosan nanoparticles containing Citrus aurantium essential oil on postharvest quality of white button mushroom was examined and compared to essential oil fumigation and control treatments. RESULTS: Based on high-resolution transmission electron microscopy and dynamic light scattering, nanoparticles exhibited a spherical shape of 20-60 nm diameter. The results revealed that the application of chitosan nanoparticles loaded with C. aurantium oil significantly decelerated the rate of color change, weight loss and firmness compared to fumigation with essential oil and control treatments. Treatment of fruit bodies with chitosan nanoparticles loaded with C. aurantium oil promoted the accumulation of phenolic compounds and ascorbic acid, and resulted in increases in catalase and superoxide dismutase and a decrease in polyphenol oxidase activities, as the highest antioxidant capacity was observed after 15 days of cold storage. CONCLUSION: This present research demonstrates that gradual release of C. aurantium essential oil from chitosan nanoparticles could be an effective and practical method for extending the shelf life of white button mushroom up to 15 days without significant decrease in antioxidant capacity. © 2018 Society of Chemical Industry.
Assuntos
Agaricus/química , Quitosana/química , Citrus/química , Conservação de Alimentos/métodos , Conservantes de Alimentos/farmacologia , Óleos Voláteis/farmacologia , Óleos de Plantas/farmacologia , Agaricus/efeitos dos fármacos , Catalase/análise , Conservantes de Alimentos/química , Armazenamento de Alimentos , Carpóforos/classificação , Carpóforos/efeitos dos fármacos , Fumigação , Nanopartículas/química , Óleos Voláteis/química , Fenóis/análise , Óleos de Plantas/química , Controle de Qualidade , Superóxido Dismutase/análiseRESUMO
This paper presents the study of the fungi remains preserved in the waterlogged deposits of the Neolithic site of La Draga. These resources had the potential of being used as food and medicine, but also as tinder. Fire was without a doubt one of the most important resources for past people. It was used for lighting, heating, processing food and other materials, cooking and protection, and also possessed social and ritual significance. Hearths are one of the most common features at archaeological sites, but very often little attention is paid to the question of how these fires were lit, and they are seldom reflected in the archaeological record. In order to produce fire by percussion, an intermediate material is required between the sparks and the fuel. Fruiting bodies of fungi are a potential form of tinder, but are less inclined to be well-preserved than other materials. This paper presents the fungal fruiting bodies found at the Neolithic site of La Draga and discusses the meaning of their presence within the archaeological context of the site and European Prehistory.
Assuntos
Fósseis/anatomia & histologia , Carpóforos/classificação , Arqueologia , Ecossistema , Incêndios , Filogenia , EspanhaRESUMO
Recent advances in molecular methods have increased our understanding of various fungal symbioses. However, little is known about genomic and microbiome features of most uncultured symbiotic fungal clades. Here, we analysed the genome and microbiome of Inocybaceae (Agaricales, Basidiomycota), a largely uncultured ectomycorrhizal clade known to form symbiotic associations with a wide variety of plant species. We used metagenomic sequencing and assembly of dikaryotic fruiting-body tissues from Inocybe terrigena (Fr.) Kuyper, to classify fungal and bacterial genomic sequences, and obtained a nearly complete fungal genome containing 93% of core eukaryotic genes. Comparative genomics reveals that I. terrigena is more similar to ectomycorrhizal and brown rot fungi than to white rot fungi. The reduction in lignin degradation capacity has been independent from and significantly faster than in closely related ectomycorrhizal clades supporting that ectomycorrhizal symbiosis evolved independently in Inocybe. The microbiome of I. terrigena fruiting-bodies includes bacteria with known symbiotic functions in other fungal and non-fungal host environments, suggesting potential symbiotic functions of these bacteria in fungal tissues regardless of habitat conditions. Our study demonstrates the usefulness of direct metagenomics analysis of fruiting-body tissues for characterizing fungal genomes and microbiome.
Assuntos
Agaricales/genética , Bactérias/isolamento & purificação , Microbiota , Agaricales/classificação , Agaricales/isolamento & purificação , Agaricales/fisiologia , Bactérias/classificação , Bactérias/genética , Fenômenos Fisiológicos Bacterianos , Carpóforos/classificação , Carpóforos/genética , Carpóforos/isolamento & purificação , Carpóforos/fisiologia , Genoma Fúngico , Metagenômica , Filogenia , SimbioseRESUMO
Members of the genus Protostelium (including P. mycophaga, P. nocturnum, and P. okumukumu) are protosteloid amoebae commonly found in terrestrial habitats on dead plant matter. They, along with the closely allied nominal genus Planoprotostelium, containing the single species Pl. aurantium, all have an amoeboid trophic stage with acutely pointed subpseudopodia and orange lipid droplets in the granuloplasm. These amoebae form stalked fruiting bodies topped with a single, usually deciduous spore. The species are identified based on their fruiting body morphologies except for Pl. aurantium which looks similar to P. mycophaga in fruiting morphology, but has amoebae that can make flagella in liquid medium. We built phylogenetic trees using nuclear small subunit ribosomal DNA sequences of 35 isolates from the genera Protostelium and Planoprotostelium and found that (1) the nonflagellated P. nocturnum and P. okumukumu branch basally in the genus Protostelium, (2) the flagellate, Pl. aurantium falls within the genus Protostelium in a monophyletic clade with the nominal variety, P. mycophaga var. crassipes, (3) the cultures initially identified as Protostelium mycophaga can be divided into at least three morphologically recognizable taxa, P. aurantium n. comb., P. apiculatum n. sp., and P. m. rodmani n. subsp., as well as a paraphyletic assemblage that includes the remainder of the P. mycophaga morphotype. These findings have implications for understanding the ecology, evolution, and diversity of these amoeboid organisms and for using these amoebae as models for other amoeboid groups.
Assuntos
DNA Ribossômico/genética , Micetozoários , Flagelos/fisiologia , Carpóforos/classificação , Micetozoários/classificação , Micetozoários/genética , Micetozoários/isolamento & purificação , Filogenia , Plantas/microbiologiaRESUMO
BACKGROUND: Cordyceps fungus found in infected cicada nymphs ("cicada flowers") is utilized in traditional Chinese medicine. Cordyceps fungus toxicity in humans has not been previously reported. We report 60 cases of apparent Cordyceps poisoning in Southern Vietnam. METHODS: We retrospectively collected demographic and clinical data from the medical records (21 cases) and by telephone interview (39 cases) of patients admitted to seven hospitals in Southern Vietnam following ingestion of cicada flowers between 2008 and 2015. We also determined the species of Cordyceps present in the cicada flowers and performed a partial chemical analysis of the fungus. RESULTS: Sixty cases of toxic effects following ingestion of cicada flowers were documented. Symptom onset occurred within 60 minutes following ingestion. Symptoms included dizziness, vomiting, salivation, mydriasis, jaw stiffness, urinary retention, seizures, agitated delirium, hallucinations, somnolence and coma. None of the patients suffered liver or kidney injury. There was one fatality. The Cordyceps fungus involved in these poisoning was identified as Ophiocordyceps heteropoda. The presence of ibotenic acid was confirmed, but musimol and muscarine were absent. CONCLUSIONS: Cicada infected with Ophiocordyceps heteropoda in Vietnam contain ibotenic acid and are associated with a clinical syndrome consistent with its effects.
Assuntos
Acidentes , Cordyceps/metabolismo , Microbiologia de Alimentos , Doenças Transmitidas por Alimentos/etiologia , Carpóforos/metabolismo , Hemípteros/microbiologia , Ácido Ibotênico/intoxicação , Microbiologia do Solo , Adolescente , Adulto , Animais , Criança , Cordyceps/classificação , Cordyceps/isolamento & purificação , Feminino , Doenças Transmitidas por Alimentos/diagnóstico , Doenças Transmitidas por Alimentos/microbiologia , Doenças Transmitidas por Alimentos/mortalidade , Carpóforos/classificação , Carpóforos/isolamento & purificação , Hemípteros/embriologia , Humanos , Ácido Ibotênico/metabolismo , Masculino , Pessoa de Meia-Idade , Ninfa , Estudos Retrospectivos , Vietnã , Adulto JovemRESUMO
Obtaining reliable and representative mushroom production data requires time-consuming sampling schemes. In this paper, we assessed a simple methodology to detect mushroom emergence by trapping the fungal spores of the fruiting body community in plots where mushroom production was determined weekly. We compared the performance of filter paper traps with that of funnel traps and combined these spore trapping methods with species-specific quantitative real-time PCR and Illumina MiSeq to determine the spore abundance. Significantly more MiSeq proportional reads were generated for both ectomycorrhizal and saprotrophic fungal species using filter traps than were obtained using funnel traps. The spores of 37 fungal species that produced fruiting bodies in the study plots were identified. Spore community composition changed considerably over time due to the emergence of ephemeral fruiting bodies and rapid spore deposition (lasting from 1 to 2 weeks), which occurred in the absence of rainfall events. For many species, the emergence of epigeous fruiting bodies was followed by a peak in the relative abundance of their airborne spores. There were significant positive relationships between fruiting body yields and spore abundance in time for five of seven fungal species. There was no relationship between fruiting body yields and their spore abundance at plot level, indicating that some of the spores captured in each plot were arriving from the surrounding areas. Differences in fungal detection capacity by spore trapping may indicate different dispersal ability between fungal species. Further research can help to identify the spore rain patterns for most common fungal species.IMPORTANCE Mushroom monitoring represents a serious challenge in economic and logistical terms because sampling approaches demand extensive field work at both the spatial and temporal scales. In addition, the identification of fungal taxa depends on the expertise of experienced fungal taxonomists. Similarly, the study of fungal dispersal has been constrained by technological limitations, especially because the morphological identification of spores is a challenging and time-consuming task. Here, we demonstrate that spores from ectomycorrhizal and saprotrophic fungal species can be identified using simple spore traps together with either MiSeq fungus-specific amplicon sequencing or species-specific quantitative real-time PCR. In addition, the proposed methodology can be used to characterize the airborne fungal community and to detect mushroom emergence in forest ecosystems.
Assuntos
Agaricales/isolamento & purificação , Técnicas de Tipagem Micológica/métodos , Esporos Fúngicos/isolamento & purificação , Agaricales/classificação , Agaricales/genética , Agaricales/crescimento & desenvolvimento , Carpóforos/classificação , Carpóforos/genética , Carpóforos/crescimento & desenvolvimento , Carpóforos/isolamento & purificação , Técnicas de Tipagem Micológica/instrumentação , Reação em Cadeia da Polimerase em Tempo Real , Microbiologia do Solo , Esporos Fúngicos/classificação , Esporos Fúngicos/genética , Esporos Fúngicos/crescimento & desenvolvimentoRESUMO
Changes in the ecology of macrofungi are poorly understood, not only because much of their life cycle is hidden belowground, but also because experiments often miss real-world complexity and most fruitbody inventories are limited in space and time. The National Poisons Information Centre 'Tox Info Suisse' provides countrywide 24hours/7days medical advice in case of poisonings since 1966. Here, we introduce a total of 12,126 mushroom-related phone calls that were received by Tox Info Suisse between 1966 and 2014. This indirect source of mycological information is dominated by the families of Boletaceae (11%), Agaricaceae (10%) and Amanitaceae (8%), which account for ~30% of all cases. Mushroom fruiting patterns revealed by the Poisons Centre inventory statistically resemble changes in fungal phenology, productivity and diversity as reflected by the Swiss National Data Centre 'SwissFungi'. Although the newly developed Tox Info Suisse dataset provides an innovative basis for timely environmental research, caution is advised when interpreting some of the observed long-term changes and autumnal extremes. Uncertainty of the new record relates to possible data incompleteness, imprecise species description and/or identification, as well as the inclusion of cultivated and non-indigenous mushrooms. Nevertheless, we hope that the Tox Info Suisse inventory will stimulate and enable a variety of ecological-oriented follow-up studies.
Assuntos
Agaricales , Carpóforos , Micotoxicose/etiologia , Agaricales/classificação , Clima , Carpóforos/classificação , Humanos , Centros de Informação , Estações do Ano , Especificidade da Espécie , Suíça/epidemiologiaRESUMO
This article presents discussions of mushrooms as a source of food, income, as well as medicine among the Bamoun people of the highlands of West Cameroon, where the vegetation is mainly savannah mixed with forest galleries. Like most tribes in tropical Africa, the Bamoun people use a wide range of natural products as mushrooms. This study attempts to identify the various mushrooms exploited by the Bamoun. Ethnomycological surveys and field trips were conducted over 4 years in several villages in the Noun Division. Samples of wild mushrooms were collected from both the savannah and the forest galleries. These were described, preserved, and identified. The study shows that the Bamoun people use at least 40 species of mushrooms for either food or medicine. These species belong to 8 genera: Auricularia, Cantharellus, Ganoderma, Pleurotus, Lactarius, Lactifluus, Russula, and Termitomyces. Species of genera Lactarius, Lactifluus, Russula, and Termitomyces are most often used for food, whereas Ganoderma spp. and Pleurotus tuber-regium are mainly exploited for medicinal purposes. This survey provides an overview of the diversity of mushrooms and their importance to the local people of this area. Since some of the species mentioned by the local population were not fruiting at the time of our field trips, additional investigations are needed to further clarify the diversity and the usage of mushrooms in this region.
Assuntos
Agaricales/classificação , Alimentos , Carpóforos/classificação , Medicinas Tradicionais Africanas , Camarões , Etnofarmacologia , HumanosRESUMO
Species of the genus Retiboletus (Boletaceae, Boletales) in China are investigated based on morphology and phylogenetic analyses of DNA sequences from nuc rDNA internal transcribed spacer (ITS) and partial 28S regions and sequences from the translation elongation factor 1-a gene (tef1a). Six lineages are recovered among the collections studied. Five of these are documented and presented in the present paper, including three new species and two new combinations. The remaining species is not described due to the paucity of material. The specimens from China identified as "R. ornatipes" or "R. retipes" are in fact R. sinensis or R. kauffmanii, those labeled "R. griseus" are either R. fuscus or R. pseudogriseus A key to all known taxa of the genus is provided. Phylogenetic relationships of taxa within Retiboletus are partially resolved. A preliminary biogeographical analysis shows that allied species of Retiboletus between eastern Asia and North/Central America are common but there are no Retiboletus species common to both continents. Species of Retiboletus in Japan and southern China are conspecific or closely related.
Assuntos
Basidiomycota/classificação , Basidiomycota/citologia , Basidiomycota/genética , Basidiomycota/fisiologia , China , Carpóforos/classificação , Carpóforos/fisiologia , Filogenia , Especificidade da EspécieRESUMO
Lactarius (Russulales) is an important component of ectomycorrhizal fungal communities in cold-dominated contiguous arctic and disjunct alpine habitats where it associates primarily with Betula, Dryas and Salix However, little is known of this genus in the central and southern Rocky Mountain alpine zone (3000-3900 m) of North America. Molecular phylogenetic analyses of nuc rDNA ITS1-5.8S-ITS2 (ITS barcode) and the second largest subunit of the RNA polymerase II gene (RPB2) partial sequences in conjunction with detailed morphological examination confirm at least six species occurring above treeline. Most have intercontinental distributions in North America and Eurasia according to molecular comparison with type material and collections from Europe, Fennoscandia, Svalbard and Alaska. Rocky Mountain collections of L. lanceolatus (subgenus Russularia), along with the type from Alaska are paraphyletic with respect to L. aurantiacus and North American taxa L. luculentus and L. luculentus v. laetus Rocky Mountain collections of L. nanus, L. glyciosmus, L. repraesentaneus and L. salicis-reticulatae (subgenus Piperites) all form clades with European material from type localities and other arctic-alpine habitats. The arctic-alpine L. pseudouvidus/L. brunneoviolaceus group appears to be a complex containing additional taxa. North American material originally described as part of this group is well-separated phylogenetically and is described here as L. pallidomarginatus sp. nov. Lactarius lanceolatus, L. nanus and L. salicis-reticulatae appear largely restricted to arctic-alpine habitats with Salix Lactarius glyciosmus and L. repraesentaneus occur in arctic-alpine, subalpine and boreal habitats with Betula and also Picea and possibly Salix for the latter. Species distributions are hypothesized to be shaped by host ranges, glaciation and long distance dispersal.
Assuntos
Basidiomycota/classificação , Basidiomycota/genética , Micorrizas/classificação , Micorrizas/genética , Altitude , Basidiomycota/fisiologia , Carpóforos/classificação , Filogenia , Especificidade da Espécie , Estados UnidosRESUMO
Hericium erinaceus possesses multiple medicinal values. To date, however, there have been few studies of the systemic screening of H. erinaceus strains, and the neuroprotective effects of H. erinaceus prepared from homogenized, fresh fruiting bodies are not fully understood. In this study, 4 random primers were selected and used in random amplified polymorphic DNA (RAPD) polymerase chain reaction (PCR) to screen and evaluate the genetic diversity of 19 commercial strains of H. erinaceus from different localities in China. A total of 66 bands were obtained, and the percentage of polymorphic loci reached 80.30%. Five dendrograms were constructed based on RAPD by Jaccard cluster and within-group linkage analysis. Primer S20 as well as all 4 primers had great potential as specific primers for RAPD-PCR molecular identification and differentiation of H. erinaceus strains. Based on the results of submerged culture and fruiting body cultivation, strains HT-N, HT-J1, HT-C, and HT-M were identified as superior among the 19 H. erinaceus strains. Further study showed that the oral preparation of homogenized, fresh fruiting bodies of H. erinaceus could attenuate the Aß25-35-triggered damage in PC12 cells by significantly increasing cell viability and by decreasing the release of lactate dehydrogenase. In conclusion, RAPD-PCR combined with liquid and solid cultures can be used well in the screening and identification of H. erinaceus strains, and products prepared from homogenized, fresh fruiting bodies of H. erinaceus had neuroprotective effects on PC12 cells.
Assuntos
Agaricales/isolamento & purificação , Peptídeos beta-Amiloides/toxicidade , Medicamentos de Ervas Chinesas/farmacologia , Neurônios/efeitos dos fármacos , Fármacos Neuroprotetores/farmacologia , Fragmentos de Peptídeos/toxicidade , Agaricales/química , Agaricales/classificação , Agaricales/genética , Doença de Alzheimer/tratamento farmacológico , Doença de Alzheimer/metabolismo , Doença de Alzheimer/fisiopatologia , Animais , Sobrevivência Celular/efeitos dos fármacos , China , Carpóforos/química , Carpóforos/classificação , Carpóforos/genética , Carpóforos/isolamento & purificação , Humanos , Neurônios/citologia , Células PC12 , Filogenia , Técnica de Amplificação ao Acaso de DNA Polimórfico , RatosRESUMO
Before the recent revolution in molecular biology, field studies on fungal communities were mostly confined to fruit bodies, whereas mycelial interactions were studied in the laboratory. Here we combine high-throughput sequencing with a fruit body inventory to study simultaneously mycelial and fruit body occurrences in a community of fungi inhabiting dead wood of Norway spruce. We studied mycelial occurrence by extracting DNA from wood samples followed by 454-sequencing of the ITS1 and ITS2 regions and an automated procedure for species identification. In total, we detected 198 species as mycelia and 137 species as fruit bodies. The correlation between mycelial and fruit body occurrences was high for the majority of the species, suggesting that high-throughput sequencing can successfully characterize the dominating fungal communities, despite possible biases related to sampling, PCR, sequencing and molecular identification. We used the fruit body and molecular data to test hypothesized links between life history and population dynamic parameters. We show that the species that have on average a high mycelial abundance also have a high fruiting rate and produce large fruit bodies, leading to a positive feedback loop in their population dynamics. Earlier studies have shown that species with specialized resource requirements are rarely seen fruiting, for which reason they are often classified as red-listed. We show with the help of high-throughput sequencing that some of these species are more abundant as mycelium in wood than what could be expected from their occurrence as fruit bodies.
Assuntos
Biodiversidade , Microbiologia Ambiental , Carpóforos/fisiologia , Fungos/fisiologia , Sequenciamento de Nucleotídeos em Larga Escala , Micélio/fisiologia , Madeira/microbiologia , Basidiomycota/genética , DNA Fúngico/genética , DNA Espaçador Ribossômico , Carpóforos/classificação , Carpóforos/genética , Fungos/classificação , Fungos/genética , Micélio/classificação , Micélio/genética , Picea/microbiologia , Madeira/químicaRESUMO
A new species of Cortinarius, C. flavoaurantians sp. nov., is described from Italian Quercus woods based on both morphological and ITS rDNA data. This taxon is characterized by a yellowish pileus and cortina, a white universal veil and a pileipellis that reacts yellow-orange with KOH. Illustrations of the key micromorphological features and fresh basidiomata in situ are provided. Closely related species are discussed.
Assuntos
Cortinarius/classificação , Carpóforos/citologia , Filogenia , Quercus/microbiologia , Sequência de Bases , Biodiversidade , Cortinarius/citologia , Cortinarius/genética , Cortinarius/isolamento & purificação , DNA Fúngico/química , DNA Fúngico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Carpóforos/classificação , Carpóforos/isolamento & purificação , Hidróxidos , Hifas/classificação , Hifas/citologia , Hifas/isolamento & purificação , Itália , Dados de Sequência Molecular , Fenótipo , Compostos de Potássio , Análise de Sequência de DNA , Esporos Fúngicos/classificação , Esporos Fúngicos/citologia , Esporos Fúngicos/isolamento & purificaçãoRESUMO
Members of the Cantharellaceae (Cantharellales, Basidiomycota) are common ectomycorrhizal associates of the leguminous genus Dicymbe in the Pakaraima Mountains of Guyana. Eight distinct species or morphospecies currently are recognized in Craterellus Pers. or Cantharellus Adans. ex Fr. from Guyanese Dicymbe-dominated forests. We evaluated the systematics of these taxa with phylogenetic analyses of DNA sequence data from the nuclear ribosomal regions of the internal transcribed spacer (ITS) and 28S large subunit (LSU). The results of these analyses along with careful assessment of morphology let us described two new species, Craterellus atratoides sp. nov. and Craterellus strigosus sp. nov., redescribe Craterellus atratus (Corner) Yomyart et al. based on new material from Guyana, and propose a new combination in Craterellus for Cantharellus pleurotoides T.W. Henkel, Aime & S.L. Mill. Macroscopic illustrations are provided for two additional cantharelloid morphospecies confirmed in Craterellus, as well as the regionally endemic Cantharellus guyanensis Mont. Macromorphological, micromorphological and habitat data are provided for C. atratoides, C. strigosus and C. atratus, and ITS and LSU sequence data are provided for each of the eight known Guyanese taxa.
Assuntos
Basidiomycota/classificação , Fabaceae/microbiologia , Carpóforos/citologia , Micorrizas/classificação , Sequência de Bases , Basidiomycota/citologia , Basidiomycota/genética , Basidiomycota/isolamento & purificação , DNA Fúngico/genética , DNA Ribossômico/química , DNA Ribossômico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Carpóforos/classificação , Carpóforos/isolamento & purificação , Guiana , Dados de Sequência Molecular , Micorrizas/citologia , Micorrizas/genética , Micorrizas/isolamento & purificação , Filogenia , Análise de Sequência de DNA , Esporos Fúngicos/classificação , Esporos Fúngicos/citologia , Esporos Fúngicos/isolamento & purificação , Clima TropicalRESUMO
Two new species of Hydnum, characterized by slender Hydnum rufescens-like basidiomes and ovoid to broadly ellipsoid basidiospores, are described from the Iberian Peninsula based on morphological and ITS molecular data. Hydnum ovoideisporum is distinguished by pilei with deep orange tones and strong preference for calcareous soil. It is widespread in the Iberian-Mediterranean area. Hydnum vesterholtii is characterized by its ocher to light ocher pileus, and nearly all the collections were made in the Pyrenees. Both ovoid-spored species are monophyletic well supported groups in the maximum parsimony and Bayesian ITS phylogenies, while the remainder of the samples assigned to H. rufescens s.l. and having globose basidiospores split into six well supported clades. The need to typify the name Hydnum rufescens is discussed, and a provisional key is given for the European taxa of Hydnum.