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1.
Biochim Biophys Acta Gen Subj ; 1867(9): 130427, 2023 09.
Artigo em Inglês | MEDLINE | ID: mdl-37454915

RESUMO

BACKGROUND & AIMS: Transport functions of albumin are of clinical and pharmacological interest and are determined by albumin's properties like posttranslational modifications or bound ligands. Both are affected in pathological conditions and in therapeutic grade albumin solutions. The term effective albumin concentration was introduced as a measure of functionally intact albumin. Our aim was to evaluate the impact of ligands and modifications with different approaches as a measure of effective albumin. APPROACH & RESULTS: We used a spin labelled fatty acid and dansylsarcosine to characterize binding properties of albumin i) prepared from plasma of patients and healthy control donors, ii) measured directly out of plasma, iii) research grade albumin, iv) in vitro modified albumin, and v) therapeutic infusion solutions before and after removal of stabilizers. Bilirubin is the main determinant for binding function in patients' albumin. In in vitro prepared albumin bound fatty acids correlated with impaired binding. Human nonmercaptalbumin1, not human nonmercaptalbumin2, showed reduced binding properties. Binding and transport function of therapeutic albumin was severely impaired and restored by filtration. Glycation of research grade albumin had no effect on the binding of dansylsarcosine and only a minor effect on fatty acid binding. CONCLUSIONS: Our results suggest that effective albumin -in terms of binding properties- is primarily determined by bound ligands and only to a minor extent by posttranslational modifications. Characterizing albumin directly from plasma better reflects the physiological situation whereas in the case of therapeutic grade albumin stabilizers should be removed to make its binding properties accessible.


Assuntos
Albuminas , Ácidos Graxos , Humanos , Ligantes , Albuminas/metabolismo , Compostos de Dansil/química , Compostos de Dansil/metabolismo
2.
Chem Commun (Camb) ; 57(21): 2653-2656, 2021 Mar 14.
Artigo em Inglês | MEDLINE | ID: mdl-33587737

RESUMO

Here we present a novel peptide-based fluorescent "turn-on" molecule P1 for detecting RNA, in a double or single strand, AU-rich or CG-rich. Both computational and experimental studies indicate that the detection efficiency depends on the binding affinity of P1 and conformational changes. P1 could be applied for cell imaging without any additional transfection vectors. Selective detection of RNA in cells was determined by RNase digestion. Successful application of P1 for RNA imaging in cell mitosis reveals that it may have broad applications in research, biotechnology and medical science.


Assuntos
Compostos de Dansil/química , Corantes Fluorescentes/química , Peptídeos/química , RNA/análise , Compostos de Dansil/síntese química , Compostos de Dansil/metabolismo , Corantes Fluorescentes/síntese química , Corantes Fluorescentes/metabolismo , Células HeLa , Humanos , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Peptídeos/síntese química , Peptídeos/metabolismo , RNA/metabolismo , Espectrometria de Fluorescência
3.
Molecules ; 25(3)2020 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-32023900

RESUMO

Human serum albumin (HSA) is a protein that transports neutral and acid ligands in the organism. Depending on the environment's pH conditions, HSA can take one of the five isomeric forms that change its conformation. HSA can form aggregates resembling those in vitro formed from amyloid at physiological pH (neutral and acidic). Not surprisingly, the main goal of the research was aggregation/fibrillation of HSA, the study of the physicochemical properties of formed amyloid fibrils using thioflavin T (ThT) and the analysis of ligand binding to aggregated/fibrillated albumin in the presence of dansyl-l-glutamine (dGlu), dansyl-l-proline (dPro), phenylbutazone (Phb) and ketoprofen (Ket). Solutions of human serum albumin, both non-modified and modified, were examined with the use of fluorescence, absorption and circular dichroism (CD) spectroscopy. The experiments conducted allowed observation of changes in the structure of incubated HSA (HSAINC) in relation to nonmodified HSA (HSAFR). The formed aggregates/fibrillation differed in structure from HSA monomers and dimers. Based on CD spectroscopy, previously absent ßstructural constructs have been registered. Whereas, using fluorescence spectroscopy, the association constants differing for fresh and incubated HSA solutions in the presence of dansyl-amino acids and markers for binding sites were calculated and allowed observation of the conformational changes in HSA molecule.


Assuntos
Amiloide/química , Compostos de Dansil/metabolismo , Cetoprofeno/metabolismo , Fenilbutazona/metabolismo , Prolina/análogos & derivados , Albumina Sérica Humana/química , Albumina Sérica Humana/metabolismo , Sítios de Ligação , Fluorescência , Humanos , Cinética , Ligantes , Proibitinas , Prolina/metabolismo , Ligação Proteica
4.
J Anal Toxicol ; 44(5): 470-481, 2020 Apr 02.
Artigo em Inglês | MEDLINE | ID: mdl-31897465

RESUMO

We developed a robust analytical method for quantification of malondialdehyde (MDA) in urine and serum samples using dansylhydrazine (DH) as a derivatizing reagent. The derivatization procedure was partially carried out using an autosampler injection program to minimize errors associated with the low-volume addition of reagents and was optimized to yield a stable hydrazone derivative of MDA and its labeled d2-MDA analogue. The target MDA-DH derivatives were separated on an Agilent Zorbax Eclipse Plus Phenyl-Hexyl (3.0 × 100 mm, 3.5 µm) column. The mass-to-charge ratios of the target derivatives [(M+H)+ of 302 and 304 for MDA-DH and d2-MDA-DH, respectively] were analyzed in single ion monitoring mode using a single quadrupole mass spectrometer operated under positive electrospray ionization. The method limits of quantification were 5.63 nM (or 0.405 ng/mL) for urine analysis and 5.68 nM (or 0.409 ng/mL) for serum analysis. The quantification range for urine analysis was 5.63-500 nM (0.405-36.0 ng/mL) while the quantification range for serum analysis was 5.68-341 nM (0.409-24.6 ng/mL). The method showed good relative recoveries (98-103%), good accuracies (92-98%), and acceptable precisions (relative standard deviations 1.8-7.3% for inter-day precision; 1.8-6.1% for intra-day precision) as observed from the repeat analysis of quality control samples prepared at different concentrations. The method was used to measure MDA in individual urine samples (n = 287) and de-identified archived serum samples (n = 22) to assess the overall performance of the method. The results demonstrated that our method is capable of measuring urinary and serum levels of MDA, allowing its future application in epidemiologic investigations.


Assuntos
Compostos de Dansil/metabolismo , Hidrazinas/metabolismo , Malondialdeído/metabolismo , Líquidos Corporais , Cromatografia Líquida de Alta Pressão , Cromatografia Líquida , Humanos , Hidrazinas/sangue , Hidrazinas/urina , Limite de Detecção , Malondialdeído/sangue , Malondialdeído/urina , Espectrometria de Massas em Tandem
5.
Bioorg Med Chem ; 27(19): 115039, 2019 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-31420257

RESUMO

Fluorescent tagging of bioactive molecules is a powerful tool to study cellular uptake kinetics and is considered as an attractive alternative to radioligands. In this study, we developed fluorescent histone deacetylase (HDAC) inhibitors and investigated their biological activity and cellular uptake kinetics. Our approach was to introduce a dansyl group as a fluorophore in the solvent-exposed cap region of the HDAC inhibitor pharmacophore model. Three novel fluorescent HDAC inhibitors were synthesized utilizing efficient submonomer protocols followed by the introduction of a hydroxamic acid or 2-aminoanilide moiety as zinc-binding group. All compounds were tested for their inhibition of selected HDAC isoforms, and docking studies were subsequently performed to rationalize the observed selectivity profiles. All HDAC inhibitors were further screened in proliferation assays in the esophageal adenocarcinoma cell lines OE33 and OE19. Compound 2, 6-((N-(2-(benzylamino)-2-oxoethyl)-5-(dimethylamino)naphthalene)-1-sulfonamido)-N-hydroxyhexanamide, displayed the highest HDAC inhibitory capacity as well as the strongest anti-proliferative activity. Fluorescence microscopy studies revealed that compound 2 showed the fastest uptake kinetic and reached the highest absolute fluorescence intensity of all compounds. Hence, the rapid and increased cellular uptake of 2 might contribute to its potent anti-proliferative properties.


Assuntos
Compostos de Dansil/farmacologia , Corantes Fluorescentes/farmacologia , Inibidores de Histona Desacetilases/farmacologia , Peptoides/farmacologia , Acetilação/efeitos dos fármacos , Antineoplásicos/síntese química , Antineoplásicos/metabolismo , Antineoplásicos/farmacocinética , Antineoplásicos/farmacologia , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Compostos de Dansil/síntese química , Compostos de Dansil/metabolismo , Compostos de Dansil/farmacocinética , Desenho de Fármacos , Corantes Fluorescentes/síntese química , Corantes Fluorescentes/metabolismo , Corantes Fluorescentes/farmacocinética , Histona Desacetilase 1/metabolismo , Desacetilase 6 de Histona/metabolismo , Inibidores de Histona Desacetilases/síntese química , Inibidores de Histona Desacetilases/metabolismo , Inibidores de Histona Desacetilases/farmacocinética , Histonas/química , Histonas/metabolismo , Humanos , Microscopia Confocal , Microscopia de Fluorescência , Simulação de Acoplamento Molecular , Peptoides/síntese química , Peptoides/metabolismo , Peptoides/farmacocinética , Ligação Proteica
6.
Toxicol Lett ; 301: 17-23, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30408508

RESUMO

Perfluorooctane sulfonyl fluoride (PFOSF) has been defined as persistent organic pollutant in the Stockholm Convention in 2009. Currently PFOSF and its substitutes (structural analogues in which octyl group is substituted for other aliphatic chains) are still scarcely studied. HSA is a main carrier for drugs in blood, and the influence of exogenous compounds including pollutants on HSA is of particular interest. In this work, the binding sites of HSA to Perfluoroalkane sulfonyl fluoride (PFASFs) were determined by fluorescence technique. The results demonstrated that PFASFs competitively bind to HSA at Sudlow's site I against warfarin and at Sudlow's site II against dansyl-proline and the related association constants were determined. The association constants of PFOSF, perfluorohexane sulfonyl fluoride (PFHSF) and perfluorobutane sulfonyl fluoride (PFBSF) were determined to be 2.59 × 10-3 µM-1, 4.65 × 10-3 µM-1 and 2.85 × 10-3 µM-1 at Sudlow's site I and 8.68 × 10-4 µM-1, 3.43 × 10-2 µM-1 and 1.92 × 10-2 µM-1 at Sudlow's site II, respectively. The results showed that PFASFs can bind tightly to HSA and thus migrate to all parts of the body through vascular system. Non-covalent interaction between HSA and PFASFs was confirmed with tryptic digestion experiment. The mass spectra results indicated that other binding sites of HSA are also involved in the binding of PFHSF and PFBSF. The total binding numbers of PFOSF, PFHSF and PFBSF on HSA are 2, 6 and 3, respectively.


Assuntos
Fluorocarbonos/metabolismo , Albumina Sérica Humana/metabolismo , Ácidos Sulfínicos/metabolismo , Sítios de Ligação , Compostos de Dansil/metabolismo , Interações Medicamentosas , Humanos , Prolina/análogos & derivados , Prolina/metabolismo , Varfarina/metabolismo
7.
Lipids ; 53(3): 353-360, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29668081

RESUMO

Lipocalin-type prostaglandin D synthase (L-PGDS; EC:5.3.99.2) is an enzyme with dual functional roles as a prostaglandin D2 -synthesizing enzyme and as an extracellular transporter for diverse lipophilic compounds in the cerebrospinal fluid (CSF). Transport of hydrophobic endocannabinoids is mediated by serum albumin in the blood and intracellularly by the fatty acid binding proteins, but no analogous transport mechanism has yet been described in CSF. L-PGDS has been reported to promiscuously bind a wide variety of lipophilic ligands and is among the most abundant proteins found in the CSF. Here, we examine the binding of several classes of endogenous and synthetic ligands to L-PGDS. Endocannabinoids exhibited low affinity toward L-PGDS, while cannabinoid metabolites and synthetic cannabinoids displayed higher affinities for L-PGDS. These results indicate that L-PGDS is unlikely to function as a carrier for endocannabinoids in the CSF, but it may bind and transport a subset of cannabinoids.


Assuntos
Canabinoides/metabolismo , Oxirredutases Intramoleculares/metabolismo , Lipocalinas/metabolismo , Prostaglandinas/metabolismo , Triptofano/química , Encéfalo/enzimologia , Química Encefálica , Canabinoides/química , Clonagem Molecular , Compostos de Dansil/química , Compostos de Dansil/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Ácidos Graxos/química , Ácidos Graxos/metabolismo , Expressão Gênica , Biblioteca Gênica , Vetores Genéticos/química , Vetores Genéticos/metabolismo , Humanos , Oxirredutases Intramoleculares/genética , Oxirredutases Intramoleculares/isolamento & purificação , Cinética , Lipocalinas/genética , Lipocalinas/isolamento & purificação , Nitrobenzenos/química , Nitrobenzenos/metabolismo , Oxidiazóis/química , Oxidiazóis/metabolismo , Prostaglandinas/química , Ligação Proteica , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Soluções , Espectrometria de Fluorescência
8.
Biochim Biophys Acta Mol Cell Biol Lipids ; 1863(4): 399-408, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29331331

RESUMO

The distribution of lipids in tears is critical to their function. Lipids in human tears may retard evaporation by forming a surface barrier at the air interface. Lipids complexed with the major lipid binding protein in tears, tear lipocalin, reside in the bulk (aqueous) and may have functions unrelated to the surface. Many new lipids species have been revealed through recent mass spectrometric studies. Their association with lipid binding proteins has not been studied. Squalene, (O-acyl) omega-hydroxy fatty acids (OAHFA) and ceramides are examples. Even well-known lipids such as wax and cholesteryl esters are only presumed to be unbound because extracts of protein fractions of tears were devoid of these lipids. Our purpose was to determine by direct binding assays if the aforementioned lipids can bind tear lipocalin. Lipids were screened for ability to displace DAUDA from tear lipocalin in a fluorescence displacement assay. Di- and tri-glycerides, squalene, OAHFA, wax and cholesterol esters did not displace DAUDA from tear lipocalin. However, ceramides displaced DAUDA. Apparent dissociation constants for ceramide-tear lipocalin complexes using fluorescent analogs were measured consistently in the submicromolar range with 3 methods, linear spectral summation, high speed centrifugal precipitation and standard fluorescence assays. At the relatively small concentrations in tears, all ceramides were complexed to tear lipocalin. The lack of binding of di- and tri-glycerides, squalene, OAHFA, as well as wax and cholesterol esters to tear lipocalin is consonant with residence of these lipids near the air interface.


Assuntos
Ceramidas/metabolismo , Lipocalina 1/metabolismo , Bioensaio , Centrifugação , Compostos de Dansil/metabolismo , Ácidos Graxos/metabolismo , Fluorescência , Corantes Fluorescentes/metabolismo , Humanos , Simulação de Acoplamento Molecular , Solventes , Lágrimas/química
9.
J Fluoresc ; 28(1): 409-417, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29277860

RESUMO

The present work describes the photophysical behavior of a saturated fatty acid (palmitic acid) containing N-acetylated dansylamide derivative (DAN-PA) into biologically important organized assembly such as ß-cyclodextrin (ß-CD), Tween-20 (T-20) and 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) lipid bilayer membrane. The results were compared by using another N-acetylated dansylamide conjugate having a short hydrophobic tail, DAN-ACYL. Long hydrophobic tail (saturated fatty acid) containing dansylamide conjugate (DAN-PA) shows more efficient binding interactions with the ß-CD as compared to the short tail containing dansylamide derivative (DAN-ACYL). The calculated binding constants values of DAN-PA and DAN-ACYL probes are 1.35 × 102 M -1 and 0.31 × 102 M -1 respectively. The DAP-PA is a sensitive fluorophore for understanding the micellization process in T-20, as compared to the DAN-ACYL because it shows a significant change in fluorescent properties (steady-state and time-resolved both) with changing in T-20 concentrations. The calculated CMC value for T-20 surfactant is 0.07 mM. While the DAN-ACYL does not show any change in the fluorescent properties while changing the T-20 concentrations. Fluorescent parameters like steady-state and time-resolved of DAN-PA are quite sensitive towards the thermo-tropic phase transitional changes into lipid bilayer membrane properties. And the calculated thermo-tropic phase transition temperature by using DAN-PA fluorophore is 42 °C.


Assuntos
1,2-Dipalmitoilfosfatidilcolina/análogos & derivados , Membrana Celular/metabolismo , Compostos de Dansil/metabolismo , Fluorescência , Bicamadas Lipídicas/metabolismo , Polissorbatos/metabolismo , beta-Ciclodextrinas/metabolismo , 1,2-Dipalmitoilfosfatidilcolina/química , 1,2-Dipalmitoilfosfatidilcolina/metabolismo , Membrana Celular/química , Compostos de Dansil/química , Corantes Fluorescentes/química , Humanos , Bicamadas Lipídicas/química , Polissorbatos/química , Temperatura de Transição , beta-Ciclodextrinas/química
10.
Neuron ; 95(4): 729-732, 2017 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-28817794

RESUMO

Neurexins and neuroligins form trans-synaptic complexes that promote synapse development. In this issue of Neuron, Aricescu and colleagues (Elegheert et al., 2017) complement and strengthen two recent reports by the Kim and Rudenko teams (Kim et al., 2017; Gangwar et al., 2017) to dissect the molecular determinants by which MDGAs challenge the neurexin-neuroligin partnership.


Assuntos
Compostos de Dansil/metabolismo , Galactosamina/análogos & derivados , Sinapses/fisiologia , Molécula de Adesão de Leucócito Ativado/metabolismo , Animais , Moléculas de Adesão Celular Neuronais/metabolismo , Galactosamina/metabolismo , Complexos Multiproteicos/metabolismo
11.
Neuron ; 95(4): 896-913.e10, 2017 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-28817804

RESUMO

Neuroligin-neurexin (NL-NRX) complexes are fundamental synaptic organizers in the central nervous system. An accurate spatial and temporal control of NL-NRX signaling is crucial to balance excitatory and inhibitory neurotransmission, and perturbations are linked with neurodevelopmental and psychiatric disorders. MDGA proteins bind NLs and control their function and interaction with NRXs via unknown mechanisms. Here, we report crystal structures of MDGA1, the NL1-MDGA1 complex, and a spliced NL1 isoform. Two large, multi-domain MDGA molecules fold into rigid triangular structures, cradling a dimeric NL to prevent NRX binding. Structural analyses guided the discovery of a broad, splicing-modulated interaction network between MDGA and NL family members and helped rationalize the impact of autism-linked mutations. We demonstrate that expression levels largely determine whether MDGAs act selectively or suppress the synapse organizing function of multiple NLs. These results illustrate a potentially brain-wide regulatory mechanism for NL-NRX signaling modulation.


Assuntos
Compostos de Dansil/metabolismo , Galactosamina/análogos & derivados , Neurturina/metabolismo , Transdução de Sinais/fisiologia , Sinapses/fisiologia , Animais , Fatores de Transcrição de Zíper de Leucina e Hélice-Alça-Hélix Básicos/genética , Fatores de Transcrição de Zíper de Leucina e Hélice-Alça-Hélix Básicos/metabolismo , Células COS , Proteínas de Ligação ao Cálcio/genética , Proteínas de Ligação ao Cálcio/metabolismo , Moléculas de Adesão Celular Neuronais/genética , Moléculas de Adesão Celular Neuronais/metabolismo , Galinhas , Técnicas de Cocultura , Proteínas da Matriz Extracelular/genética , Proteínas da Matriz Extracelular/metabolismo , Galactosamina/genética , Galactosamina/metabolismo , Células HEK293 , Humanos , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Camundongos , Modelos Moleculares , Mutagênese Sítio-Dirigida , Mutação/genética , Proteínas do Tecido Nervoso/metabolismo , Neurturina/genética , Mapas de Interação de Proteínas , Receptores de N-Metil-D-Aspartato/metabolismo , Alinhamento de Sequência
12.
PLoS One ; 12(6): e0180404, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28662200

RESUMO

A wide variety of drugs bind to human serum albumin (HSA) at its two principal sites, namely site I and site II. A number of reports indicate that drug binding to these two binding sites are not completely independent, and that interactions between ligands of these two discrete sites can play a role. In this study, the effect of the binding of long-chain fatty acids on the interactive binding between dansyl-L-asparagine (DNSA; site I ligand) and ibuprofen (site II ligand) at pH6.5 was examined. Binding experiments showed that the binding of sodium oleate (Ole) to HSA induces conformational changes in the molecule, which, in turn, changes the individual binding of DNSA and ibuprofen, as well as the mode of interaction between these two ligands from a 'competitive-like' allosteric interaction in the case of the defatted HSA conformer to a 'nearly independent' binding in the case of non-defatted HSA conformer. Circular dichroism measurements indicated that ibuprofen and Ole are likely to modify the spatial orientation of DNSA at its binding site. Docking simulations suggest that the long-distance electric repulsion between DNSA and ibuprofen on defatted HSA contributes to a 'competitive-like' allosteric interaction, whereas extending the distance between ligands and/or increasing the flexibility or size of the DNSA binding site in fatted HSA evokes a change in the interaction mode to 'nearly independent' binding. The present findings provide further insights into the structural dynamics of HSA upon the binding of fatty acids, and its effects on drug binding and drug-drug interactions that occur on HSA.


Assuntos
Asparagina/análogos & derivados , Compostos de Dansil/metabolismo , Ácidos Graxos/metabolismo , Ibuprofeno/metabolismo , Albumina Sérica/metabolismo , Asparagina/metabolismo , Sítios de Ligação , Dicroísmo Circular , Humanos , Ligantes , Simulação de Acoplamento Molecular
13.
J Mol Recognit ; 30(11)2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-28608578

RESUMO

Cantharidin, a monoterpene isolated from the insect blister beetle, has long been used as a medicinal agent in the traditional Chinese medicine. Cantharidin inhibits a subgroup of serine/threonine phosphatases, thus inducing cell growth inhibition and cytotoxicity. Cantharidin has anticancer activity in vitro, since it is able of inducing p53-dependent apoptosis and double-strand breakage of DNA in cancer cells. Although the toxicity of cantharidin to the gastrointestinal and urinary tracts prevents its medical use, it is a promising lead compound for chemical modification to develop new anticancer therapeutics. In fact, cantharidin does not cause myelosuppression and displays anticancer activity against cells with a multidrug resistance phenotype. Here, the competitive inhibitory effect of cantharidin on heme-Fe(III) binding to the fatty acid site 1 (FA1) of human serum albumin (HSA) is reported. Docking and molecular dynamics simulations support functional data indicating the preferential binding of cantharidin to the FA1 site of HSA. Present results may be relevant in vivo as HSA could transport cantharidin, which in turn could affect heme-Fe(III) scavenging by HSA.


Assuntos
Ligação Competitiva , Cantaridina/farmacologia , Ácidos Graxos/metabolismo , Heme/metabolismo , Albumina Sérica Humana/metabolismo , Cantaridina/química , Compostos de Dansil/química , Compostos de Dansil/metabolismo , Humanos , Ligantes , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Ligação Proteica/efeitos dos fármacos , Sarcosina/análogos & derivados , Sarcosina/química , Sarcosina/metabolismo , Albumina Sérica Humana/química , Termodinâmica
14.
J Biol Chem ; 291(2): 800-12, 2016 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-26555266

RESUMO

Plasminogen activator inhibitor 1 (PAI-1) is a serpin inhibitor of the plasminogen activators urokinase-type plasminogen activator (uPA) and tissue plasminogen activator, which binds tightly to the clearance and signaling receptor low density lipoprotein receptor-related protein 1 (LRP1) in both proteinase-complexed and uncomplexed forms. Binding sites for PAI-1 within LRP1 have been localized to CR clusters II and IV. Within cluster II, there is a strong preference for the triple CR domain fragment CR456. Previous mutagenesis studies to identify the binding site on PAI-1 for LRP1 have given conflicting results or implied small binding contributions incompatible with the high affinity PAI-1/LRP1 interaction. Using a highly sensitive solution fluorescence assay, we have examined binding of CR456 to arginine and lysine variants of PAI-1 and definitively identified the binding site as composed of four basic residues, Lys-69, Arg-76, Lys-80, and Lys-88. These are highly conserved among mammalian PAI-1s. Individual mutations result in a 13-800-fold increase in Kd values. We present evidence that binding involves engagement of CR4 by Lys-88, CR5 by Arg-76 and Lys-80, and CR6 by Lys-69, with the strongest interactions to CR5 and CR6. Collectively, the individual binding contributions account quantitatively for the overall PAI-1/LRP1 affinity. We propose that the greater efficiency of PAI-1·uPA complex binding and clearance by LRP1, compared with PAI-1 alone, is due solely to simultaneous binding of the uPA moiety in the complex to its receptor, thereby making binding of the PAI-1 moiety to LRP1 a two-dimensional surface-localized association.


Assuntos
Aminoácidos Básicos/metabolismo , Proteína-1 Relacionada a Receptor de Lipoproteína de Baixa Densidade/metabolismo , Inibidor 1 de Ativador de Plasminogênio/química , Inibidor 1 de Ativador de Plasminogênio/metabolismo , Sítios de Ligação , Compostos de Dansil/metabolismo , Transferência Ressonante de Energia de Fluorescência , Genes Reporter , Modelos Biológicos , Proteínas Mutantes/metabolismo , Concentração Osmolar , Ligação Proteica , Estrutura Terciária de Proteína , Triptofano/metabolismo
15.
Artigo em Inglês | MEDLINE | ID: mdl-26433342

RESUMO

The modification of human serum albumin (HSA) structure by non-enzymatic glycation is one of the underlying factors that contribute to the development of complications of diabetes and neurodegenerative diseases. The aim of the present work was to estimate how glycation of HSA altered its tertiary structure. Changes of albumin conformation were investigated by comparison of glycated (gHSA) and non-glycated human serum albumin (HSA) absorption spectra, red edge excitation shift (REES) and synchronous spectra. Effect of glycation on human serum albumin tertiary structure was also investigated by (1)H NMR spectroscopy. Formation of gHSA Advanced Glycation End-products (AGEs) caused absorption of UV-VIS light between 310 nm and 400 nm while for non-glycated HSA in this region no absorbance has been registered. Analysis of red edge excitation shift effect allowed for observation of structural changes of gHSA in the hydrophobic pocket containing the tryptophanyl residue. Moreover changes in the microenvironment of tryptophanyl and tyrosyl residues brought about AGEs on the basis of synchronous fluorescence spectroscopy have been confirmed. The influence of glycation process on serum albumin binding to 5-dimethylaminonaphthalene-1-sulfonamide (DNSA), 2-(p-toluidino) naphthalene-6-sulfonic acid (TNS), has been studied. Fluorescence analysis showed that environment of both binding site I and II is modified by galactose glycation.


Assuntos
Albumina Sérica/química , Compostos de Dansil/metabolismo , Glicosilação , Humanos , Interações Hidrofóbicas e Hidrofílicas , Naftalenossulfonatos/metabolismo , Estrutura Terciária de Proteína , Espectroscopia de Prótons por Ressonância Magnética , Albumina Sérica/metabolismo , Espectrometria de Fluorescência
16.
Anal Chem ; 87(19): 9838-45, 2015 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-26327437

RESUMO

High-performance chemical isotope labeling (CIL) liquid chromatography-mass spectrometry (LC-MS) is an enabling technology based on rational design of labeling reagents to target a class of metabolites sharing the same functional group (e.g., all the amine-containing metabolites or the amine submetabolome) to provide concomitant improvements in metabolite separation, detection, and quantification. However, identification of labeled metabolites remains to be an analytical challenge. In this work, we describe a library of labeled standards and a search method for metabolite identification in CIL LC-MS. The current library consists of 273 unique metabolites, mainly amines and phenols that are individually labeled by dansylation (Dns). Some of them produced more than one Dns-derivative (isomers or multiple labeled products), resulting in a total of 315 dansyl compounds in the library. These metabolites cover 42 metabolic pathways, allowing the possibility of probing their changes in metabolomics studies. Each labeled metabolite contains three searchable parameters: molecular ion mass, MS/MS spectrum, and retention time (RT). To overcome RT variations caused by experimental conditions used, we have developed a calibration method to normalize RTs of labeled metabolites using a mixture of RT calibrants. A search program, DnsID, has been developed in www.MyCompoundID.org for automated identification of dansyl labeled metabolites in a sample based on matching one or more of the three parameters with those of the library standards. Using human urine as an example, we illustrate the workflow and analytical performance of this method for metabolite identification. This freely accessible resource is expandable by adding more amine and phenol standards in the future. In addition, the same strategy should be applicable for developing other labeled standards libraries to cover different classes of metabolites for comprehensive metabolomics using CIL LC-MS.


Assuntos
Aminas/análise , Compostos de Dansil/análise , Metabolômica/métodos , Fenol/análise , Aminas/metabolismo , Aminas/urina , Cromatografia Líquida/economia , Cromatografia Líquida/métodos , Compostos de Dansil/metabolismo , Humanos , Metaboloma , Metabolômica/economia , Fenol/metabolismo , Fenol/urina , Espectrometria de Massas em Tandem/economia , Espectrometria de Massas em Tandem/métodos , Fatores de Tempo , Urinálise/economia , Urinálise/métodos
17.
Antimicrob Agents Chemother ; 59(12): 7489-96, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26392495

RESUMO

Polymyxins are cyclic lipopeptide antibiotics that serve as a last line of defense against Gram-negative bacterial superbugs. However, the extensive accumulation of polymyxins in renal tubular cells can lead to nephrotoxicity, which is the major dose-limiting factor in clinical use. In order to gain further insights into the mechanism of polymyxin-induced nephrotoxicity, we have rationally designed novel fluorescent polymyxin probes to examine the localization of polymyxins in rat renal tubular (NRK-52E) cells. Our design strategy focused on incorporating a dansyl fluorophore at the hydrophobic centers of the polymyxin core structure. To this end, four novel regioselectively labeled monodansylated polymyxin B probes (MIPS-9541, MIPS-9542, MIPS-9543, and MIPS-9544) were designed, synthesized, and screened for their antimicrobial activities and apoptotic effects against rat kidney proximal tubular cells. On the basis of the assessment of antimicrobial activities, cellular uptake, and apoptotic effects on renal tubular cells, incorporation of a dansyl fluorophore at either position 6 or 7 (MIPS-9543 and MIPS-9544, respectively) of the polymyxin core structure appears to be an appropriate strategy for generating representative fluorescent polymyxin probes to be utilized in intracellular imaging and mechanistic studies. Furthermore, confocal imaging experiments utilizing these probes showed evidence of partial colocalization of the polymyxins with both the endoplasmic reticulum and mitochondria in rat renal tubular cells. Our results highlight the value of these new fluorescent polymyxin probes and provide further insights into the mechanism of polymyxin-induced nephrotoxicity.


Assuntos
Antibacterianos/farmacologia , Compostos de Dansil/farmacologia , Células Epiteliais/efeitos dos fármacos , Corantes Fluorescentes/farmacologia , Polimixina B/farmacologia , Acinetobacter baumannii/efeitos dos fármacos , Acinetobacter baumannii/crescimento & desenvolvimento , Animais , Antibacterianos/síntese química , Antibacterianos/metabolismo , Apoptose/efeitos dos fármacos , Transporte Biológico , Linhagem Celular , Compostos de Dansil/síntese química , Compostos de Dansil/metabolismo , Desenho de Fármacos , Retículo Endoplasmático/efeitos dos fármacos , Retículo Endoplasmático/metabolismo , Retículo Endoplasmático/ultraestrutura , Células Epiteliais/metabolismo , Células Epiteliais/ultraestrutura , Corantes Fluorescentes/síntese química , Corantes Fluorescentes/metabolismo , Interações Hidrofóbicas e Hidrofílicas , Túbulos Renais/efeitos dos fármacos , Túbulos Renais/metabolismo , Túbulos Renais/ultraestrutura , Klebsiella pneumoniae/efeitos dos fármacos , Klebsiella pneumoniae/crescimento & desenvolvimento , Testes de Sensibilidade Microbiana , Mitocôndrias/efeitos dos fármacos , Mitocôndrias/metabolismo , Mitocôndrias/ultraestrutura , Imagem Molecular/métodos , Polimixina B/análogos & derivados , Polimixina B/síntese química , Polimixina B/metabolismo , Pseudomonas aeruginosa/efeitos dos fármacos , Pseudomonas aeruginosa/crescimento & desenvolvimento , Ratos
18.
J Am Chem Soc ; 137(32): 10414-9, 2015 Aug 19.
Artigo em Inglês | MEDLINE | ID: mdl-26226626

RESUMO

Artifical metalloenzymes combine the reactivity of small molecule catalysts with the selectivity of enzymes, and new methods are required to tune the catalytic properties of these systems for an application of interest. Structure-based computational design could help to identify amino acid mutations leading to improved catalytic activity and enantioselectivity. Here we describe the application of Rosetta Design for the genetic optimization of an artificial transfer hydrogenase (ATHase hereafter), [(η(5)-Cp*)Ir(pico)Cl] ⊂ WT hCA II (Cp* = Me5C5(-)), for the asymmetric reduction of a cyclic imine, the precursor of salsolsidine. Based on a crystal structure of the ATHase, computational design afforded four hCAII variants with protein backbone-stabilizing and hydrophobic cofactor-embedding mutations. In dansylamide-competition assays, these designs showed 46-64-fold improved affinity for the iridium pianostool complex [(η(5)-Cp*)Ir(pico)Cl]. Gratifyingly, the new designs yielded a significant improvement in both activity and enantioselectivity (from 70% ee (WT hCA II) to up to 92% ee and a 4-fold increase in total turnover number) for the production of (S)-salsolidine. Introducing additional hydrophobicity in the Cp*-moiety of the Ir-catalyst provided by adding a propyl substituent on the Cp* moiety yields the most (S)-selective (96% ee) ATHase reported to date. X-ray structural data indicate that the high enantioselectivity results from embedding the piano stool moiety within the protein, consistent with the computational model.


Assuntos
Anidrase Carbônica II/química , Irídio/química , Engenharia de Proteínas/métodos , Proteínas Recombinantes/química , Anidrase Carbônica II/genética , Anidrase Carbônica II/metabolismo , Catálise , Coenzimas/química , Coenzimas/metabolismo , Cristalografia por Raios X , Compostos de Dansil/química , Compostos de Dansil/metabolismo , Humanos , Interações Hidrofóbicas e Hidrofílicas , Iminas/química , Irídio/metabolismo , Metaloproteínas/química , Metaloproteínas/genética , Metaloproteínas/metabolismo , Mutação , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alcaloides de Salsolina/metabolismo , Software , Relação Estrutura-Atividade
19.
Apoptosis ; 20(3): 410-20, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25596717

RESUMO

Imaging agents that enable direct detection of apoptosis are highly desirable in the field of monitoring chemotherapeutic response as well as early diagnosis and disease monitoring. Previous work demonstrated that the dansyled amino acid DNSBA is used to specifically and selectively detect apoptotic cancer cells at the both early and late stages, but the mechanism remains unclear. In this work, we evaluated DNSBA as a tool for monitoring cell apoptosis in CNE1 tumor cell models both in vitro and ex vivo after its in vivo administration, which was confirmed by other assays. The ability of DNSBA to detect multiple pathways and different stages of apoptosis leading to cell death may be advantageous in the evaluation of cancer treatment indicative of a positive therapeutic outcome. The uptake change of molecular probes DNSBA in CNE1 cells represented the changes of apoptotic rate in a caspase-dependent manner. However, the accumulation of DNSBA in apoptotic cells did not increase with the enhanced membrane permeability. Furthermore, ex vivo study demonstrated DNSBA has a similar pattern as the TUNEL-positive cells. In conclusion, DNSBA cellular imaging is useful for the early assessment of treatment-induced apoptosis, and thus may act as a substitute for Annexin V for assessing treatment response.


Assuntos
Compostos de Dansil/metabolismo , Sondas Moleculares/metabolismo , Neoplasias Nasofaríngeas/genética , Imagem Óptica/métodos , Fenilpropionatos/metabolismo , Animais , Anexina A5/genética , Anexina A5/metabolismo , Apoptose/efeitos dos fármacos , Transporte Biológico , Carcinoma , Caspases/genética , Caspases/metabolismo , Linhagem Celular Tumoral , Permeabilidade da Membrana Celular , Compostos de Dansil/química , Expressão Gênica , Humanos , Marcação In Situ das Extremidades Cortadas , Injeções Subcutâneas , Cinética , Camundongos , Camundongos Endogâmicos BALB C , Sondas Moleculares/química , Carcinoma Nasofaríngeo , Neoplasias Nasofaríngeas/diagnóstico , Neoplasias Nasofaríngeas/metabolismo , Neoplasias Nasofaríngeas/patologia , Transplante de Neoplasias , Paclitaxel/farmacologia , Fenilpropionatos/química , Fator de Necrose Tumoral alfa/farmacologia
20.
Spectrochim Acta A Mol Biomol Spectrosc ; 138: 925-31, 2015 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-25456656

RESUMO

The binding of chlorin p6, a model photosensitizer for photodynamic therapy (PDT), to the Sudlow's site II of Human Serum Albumin (HSA) has been monitored by different spectroscopic methods. Displacement of Dansyl-l-Proline (DP) from its conjugate with HSA is manifested in the spectral shift and decrease in its fluorescence intensity as well as the emergence of component with lifetime of 2-3ns, which is characteristic of free DP. As DP is known to bind specifically to the Sudlow's site II of human serum albumin, its displacement by chlorin p6 indicates the residence of the photosensitizer in the same site, in addition to Sudlow's site I. The binding constants for Sudlow's site II, determined by the stopped-flow technique, are found to be two orders of magnitude smaller than that for Sudlow's site I.


Assuntos
Ligação Competitiva , Compostos de Dansil/metabolismo , Porfirinas/metabolismo , Prolina/análogos & derivados , Albumina Sérica/metabolismo , Sítios de Ligação , Compostos de Dansil/química , Humanos , Concentração de Íons de Hidrogênio , Cinética , Porfirinas/química , Prolina/química , Prolina/metabolismo , Ligação Proteica , Espectrometria de Fluorescência , Fatores de Tempo
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