A new specimen of Prolacerta broomi from the lower Fremouw Formation (Early Triassic) of Antarctica, its biogeographical implications and a taxonomic revision.

Prolacerta broomi is an Early Triassic archosauromorph of particular importance to the early evolution of archosaurs. It is well known from many specimens from South Africa and a few relatively small specimens from Antarctica. Here, a new articulated specimen from the Fremouw Formation of Antarctica is described in detail. It represents the largest specimen of Prolacerta described to date with a nearly fully articulated and complete postcranium in addition to four skull elements. The study of this specimen and the re-evaluation of other Prolacerta specimens from both Antarctica and South Africa reveal several important new insights into its morphology, most notably regarding the premaxilla, manus, and pelvic girdle. Although well-preserved skull material from Antarctica is still lacking for Prolacerta, a detailed comparison of Prolacerta specimens from Antarctica and South Africa corroborates previous findings that there are no characters clearly distinguishing the specimens from these different regions and therefore the Antarctic material is assigned to Prolacerta broomi. The biogeographical implications of these new findings are discussed. Finally, some osteological characters for Prolacerta are revised and an updated diagnosis and phylogenetic analysis are provided.

Targeted Sampling and Target Capture: Assessing Phylogeographic Concordance with Genome-wide Data.

Comparative phylogeography provides the necessary framework to examine the factors influencing population divergence, persistence, and change over time. Avise (2000) outlined four aspects of concordance that result when data exhibit significant phylogeographic signal: concordance among sites within a locus, among multiple loci within a species, among multiple species within a region, and between genetic patterns and established biogeographic provinces. To fully address each aspect of concordance, we combined target capture of a set of orthologous loci with targeted geographic sampling of multiple species, thus removing any variability introduced by using different genetic markers and heterogeneous sampling distributions. We used hybrid enrichment and high-throughput sequencing of four anuran species sampled from 36 congruent localities in the Southeastern United States Coastal Plain, a region that represents one of the classic systems in phylogeography. In total, we recovered > 375 of the same nuclear loci across species and assembled mitochondrial genomes, resulting in one of the most comprehensive comparative phylogeographic datasets in any region or taxon to date. We used these data to evaluate concordance, compare genetic structure across species, and test previously described biogeographic features in the region including major river drainages and suture zones. We then applied a recently-developed framework to quantify concordance across species using phylogeographic concordance factors. For the four species examined, which have higher dispersal and potentially limited structure compared to many amphibians, we found poor resolution in individual nuclear gene trees even with long (~ 1400 bp) nuclear sequences. The mitochondrial and multi-locus nuclear datasets, however, produced similar patterns within species, indicated high discordance among species, and suggested little correspondence of genetic patterns with putative biogeographic barriers. Variation in the phylogeographic structure detected may be related to differences in natural history, in that the two habitat generalists exhibited less structure. Our study demonstrates the utility of combining target capture, which is highly repeatable and produces comparable datasets, with a targeted sampling strategy to quantify phylogeographic concordance across diverse taxa in a region with a complex history.