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The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.
Darde, Thomas A; Sallou, Olivier; Becker, Emmanuelle; Evrard, Bertrand; Monjeaud, Cyril; Le Bras, Yvan; Jégou, Bernard; Collin, Olivier; Rolland, Antoine D; Chalmel, Frédéric.
Afiliação
  • Darde TA; Inserm U1085-Irset, Université de Rennes 1, F-35042 Rennes, France Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA/INRIA) - GenOuest platform, Université de Rennes 1, F-35042 Rennes, France.
  • Sallou O; Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA/INRIA) - GenOuest platform, Université de Rennes 1, F-35042 Rennes, France.
  • Becker E; Inserm U1085-Irset, Université de Rennes 1, F-35042 Rennes, France.
  • Evrard B; Inserm U1085-Irset, Université de Rennes 1, F-35042 Rennes, France.
  • Monjeaud C; Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA/INRIA) - GenOuest platform, Université de Rennes 1, F-35042 Rennes, France.
  • Le Bras Y; Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA/INRIA) - GenOuest platform, Université de Rennes 1, F-35042 Rennes, France.
  • Jégou B; Inserm U1085-Irset, Université de Rennes 1, F-35042 Rennes, France Ecole des Hautes Études en Santé Publique, Avenue du Professeur Léon-Bernard, F-35043 Rennes, France.
  • Collin O; Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA/INRIA) - GenOuest platform, Université de Rennes 1, F-35042 Rennes, France.
  • Rolland AD; Inserm U1085-Irset, Université de Rennes 1, F-35042 Rennes, France.
  • Chalmel F; Inserm U1085-Irset, Université de Rennes 1, F-35042 Rennes, France frederic.chalmel@inserm.fr.
Nucleic Acids Res ; 43(W1): W109-16, 2015 Jul 01.
Article em En | MEDLINE | ID: mdl-25883147
ABSTRACT
We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http//rgv.genouest.org.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Gametogênese Idioma: En Ano de publicação: 2015 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Gametogênese Idioma: En Ano de publicação: 2015 Tipo de documento: Article