PhytoPath: an integrative resource for plant pathogen genomics.
Nucleic Acids Res
; 44(D1): D688-93, 2016 Jan 04.
Article
em En
| MEDLINE
| ID: mdl-26476449
ABSTRACT
PhytoPath (www.phytopathdb.org) is a resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an expertly curated catalog of genes with experimentally verified pathogenicity, with the Ensembl tools for data visualization and analysis. The resource is focused on fungi, protists (oomycetes) and bacterial plant pathogens that have genomes that have been sequenced and annotated. Genes with associated PHI-base data can be easily identified across all plant pathogen species using a BioMart-based query tool and visualized in their genomic context on the Ensembl genome browser. The PhytoPath resource contains data for 135 genomic sequences from 87 plant pathogen species, and 1364 genes curated for their role in pathogenicity and as targets for chemical intervention. Support for community annotation of gene models is provided using the WebApollo online gene editor, and we are working with interested communities to improve reference annotation for selected species.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Doenças das Plantas
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Genômica
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Bases de Dados Genéticas
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Interações Hospedeiro-Patógeno
Idioma:
En
Ano de publicação:
2016
Tipo de documento:
Article