RNA motif search with data-driven element ordering.

Rampásek, Ladislav; Jimenez, Randi M; Lupták, Andrej; Vinar, Tomás; Brejová, Brona

Rampásek, Ladislav; Jimenez, Randi M; Lupták, Andrej; Vinar, Tomás; Brejová, Brona.

Afiliação

Rampásek L; Department of Computer Science, University of Toronto, Toronto, M5R 3G4, ON, Canada.
Jimenez RM; Department of Pharmaceutical Sciences, Chemistry, and Molecular Biology and Biochemistry, University of California, Irvine, 2141 Natural Sciences 2, Irvine, 92697, CA, USA.
Lupták A; Faculty of Mathematics, Physics, and Informatics, Comenius University, Mlynská dolina, Bratislava, 842 48, Slovakia.
Vinar T; Department of Pharmaceutical Sciences, Chemistry, and Molecular Biology and Biochemistry, University of California, Irvine, 2141 Natural Sciences 2, Irvine, 92697, CA, USA.
Brejová B; Department of Pharmaceutical Sciences, Chemistry, and Molecular Biology and Biochemistry, University of California, Irvine, 2141 Natural Sciences 2, Irvine, 92697, CA, USA. aluptak@uci.edu.

BMC Bioinformatics ; 17(1): 216, 2016 May 18.

Article em En | MEDLINE | ID: mdl-27188396

Assuntos

Motivos de Nucleotídeos; RNA/química; Análise de Sequência de RNA/métodos; Algoritmos; Entropia; Humanos

Palavras-chave

Entropy; Pseudoknot; RNA motif search; Search order

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Texto completo: 1 Base de dados: MEDLINE Assunto principal: RNA / Análise de Sequência de RNA / Motivos de Nucleotídeos Idioma: En Ano de publicação: 2016 Tipo de documento: Article

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