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Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser.
Ekeberg, Tomas; Svenda, Martin; Seibert, M Marvin; Abergel, Chantal; Maia, Filipe R N C; Seltzer, Virginie; DePonte, Daniel P; Aquila, Andrew; Andreasson, Jakob; Iwan, Bianca; Jönsson, Olof; Westphal, Daniel; Odic, Dusko; Andersson, Inger; Barty, Anton; Liang, Meng; Martin, Andrew V; Gumprecht, Lars; Fleckenstein, Holger; Bajt, Sasa; Barthelmess, Miriam; Coppola, Nicola; Claverie, Jean-Michel; Loh, N Duane; Bostedt, Christoph; Bozek, John D; Krzywinski, Jacek; Messerschmidt, Marc; Bogan, Michael J; Hampton, Christina Y; Sierra, Raymond G; Frank, Matthias; Shoeman, Robert L; Lomb, Lukas; Foucar, Lutz; Epp, Sascha W; Rolles, Daniel; Rudenko, Artem; Hartmann, Robert; Hartmann, Andreas; Kimmel, Nils; Holl, Peter; Weidenspointner, Georg; Rudek, Benedikt; Erk, Benjamin; Kassemeyer, Stephan; Schlichting, Ilme; Strüder, Lothar; Ullrich, Joachim; Schmidt, Carlo.
Afiliação
  • Ekeberg T; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Svenda M; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Seibert MM; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Abergel C; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Maia FR; Information Génomique et Structurale (UMR7256) CNRS &Aix-Marseille Université, Institut de Microbiologie de la Méditerranée (FR3479), Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France.
  • Seltzer V; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • DePonte DP; Information Génomique et Structurale (UMR7256) CNRS &Aix-Marseille Université, Institut de Microbiologie de la Méditerranée (FR3479), Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France.
  • Aquila A; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Andreasson J; LCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Iwan B; LCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Jönsson O; European XFEL, Albert-Einstein-Ring 19, 22761 Hamburg, Germany.
  • Westphal D; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Odic D; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Andersson I; Commissariat à l'énergie atomique et aux énergies alternatives, Centre d'études de Saclay, 91191 Gif sur Yvette cedex, France.
  • Barty A; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Liang M; Molekyl- och kondenserade materiens fysik, Institutionen för Fysik och Astronomi, Uppsala University, Lägerhyddsvägen 1 (Box 524), SE-751 20 Uppsala, Sweden.
  • Martin AV; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Gumprecht L; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Fleckenstein H; Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
  • Bajt S; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Barthelmess M; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Coppola N; LCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Claverie JM; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Loh ND; The University of Melbourne, 161 Barry Street, Parkville, 3010 Victoria, Australia.
  • Bostedt C; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Bozek JD; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Krzywinski J; Photon Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Messerschmidt M; Photon Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Bogan MJ; Center for Free-Electron Laser Science, DESY, Notkestrasse 85, 22607 Hamburg, Germany.
  • Hampton CY; Information Génomique et Structurale (UMR7256) CNRS &Aix-Marseille Université, Institut de Microbiologie de la Méditerranée (FR3479), Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France.
  • Sierra RG; Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Frank M; Centre for BioImaging Sciences, National University of Singapore, 14 Science Drive 4 Blk S1 A, Singapore 117546, Singapore.
  • Shoeman RL; LCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Lomb L; Synchrotron SOLEIL, L'orme des Merisiers roundabout of St Aubin, 91190 Saint Aubin, France.
  • Foucar L; LCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Epp SW; LCLS, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Rolles D; Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Rudenko A; Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Hartmann R; Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
  • Hartmann A; Lawrence Livermore National Laboratory, 7000 East Avenue, Mail Stop L-211, Livermore, California 94551, USA.
  • Kimmel N; Max-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
  • Holl P; Max-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
  • Weidenspointner G; Max-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
  • Rudek B; Max Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
  • Erk B; Max Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
  • Kassemeyer S; Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg, Germany.
  • Schlichting I; Max-Planck-Institut für medizinische Forschung, Jahnstr. 29, 69120 Heidelberg, Germany.
  • Strüder L; Max Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
  • Ullrich J; Department of Physics, J.R. Macdonald Laboratory, Kansas State University, 116 Cardwell Hall, Manhattan, Kansas 66506, USA.
  • Schmidt C; Max Planck Advanced Study Group, Center for Free Electron Laser Science, Notkestrasse 85, 22607 Hamburg, Germany.
Sci Data ; 3: 160060, 2016 Aug 01.
Article em En | MEDLINE | ID: mdl-27479754
ABSTRACT
Free-electron lasers (FEL) hold the potential to revolutionize structural biology by producing X-ray pules short enough to outrun radiation damage, thus allowing imaging of biological samples without the limitation from radiation damage. Thus, a major part of the scientific case for the first FELs was three-dimensional (3D) reconstruction of non-crystalline biological objects. In a recent publication we demonstrated the first 3D reconstruction of a biological object from an X-ray FEL using this technique. The sample was the giant Mimivirus, which is one of the largest known viruses with a diameter of 450 nm. Here we present the dataset used for this successful reconstruction. Data-analysis methods for single-particle imaging at FELs are undergoing heavy development but data collection relies on very limited time available through a highly competitive proposal process. This dataset provides experimental data to the entire community and could boost algorithm development and provide a benchmark dataset for new algorithms.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Difração de Raios X / Mimiviridae Idioma: En Ano de publicação: 2016 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Difração de Raios X / Mimiviridae Idioma: En Ano de publicação: 2016 Tipo de documento: Article