GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.
Database (Oxford)
; 20172017 01 01.
Article
em En
| MEDLINE
| ID: mdl-28605774
ABSTRACT
Database URL http//GenomeHubs.org.As the generation and use of genomic datasets is becoming increasingly common in all areas of biology, the need for resources to collate, analyse and present data from one or more genome projects is becoming more pressing. The Ensembl platform is a powerful tool to make genome data and cross-species analyses easily accessible through a web interface and a comprehensive application programming interface. Here we introduce GenomeHubs, which provide a containerized environment to facilitate the setup and hosting of custom Ensembl genome browsers. This simplifies mirroring of existing content and import of new genomic data into the Ensembl database schema. GenomeHubs also provide a set of analysis containers to decorate imported genomes with results of standard analyses and functional annotations and support export to flat files, including EMBL format for submission of assemblies and annotations to International Nucleotide Sequence Database Collaboration.
Texto completo:
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Base de dados:
MEDLINE
Assunto principal:
Genoma
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Análise de Sequência de DNA
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Internet
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Bases de Dados de Ácidos Nucleicos
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Navegador
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Data Warehousing
Idioma:
En
Ano de publicação:
2017
Tipo de documento:
Article