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Community-Driven Data Analysis Training for Biology.
Batut, Bérénice; Hiltemann, Saskia; Bagnacani, Andrea; Baker, Dannon; Bhardwaj, Vivek; Blank, Clemens; Bretaudeau, Anthony; Brillet-Guéguen, Loraine; Cech, Martin; Chilton, John; Clements, Dave; Doppelt-Azeroual, Olivia; Erxleben, Anika; Freeberg, Mallory Ann; Gladman, Simon; Hoogstrate, Youri; Hotz, Hans-Rudolf; Houwaart, Torsten; Jagtap, Pratik; Larivière, Delphine; Le Corguillé, Gildas; Manke, Thomas; Mareuil, Fabien; Ramírez, Fidel; Ryan, Devon; Sigloch, Florian Christoph; Soranzo, Nicola; Wolff, Joachim; Videm, Pavankumar; Wolfien, Markus; Wubuli, Aisanjiang; Yusuf, Dilmurat; Taylor, James; Backofen, Rolf; Nekrutenko, Anton; Grüning, Björn.
Afiliação
  • Batut B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Hiltemann S; Erasmus Medical Centre, Wytemaweg 80, Rotterdam 3015 CN, the Netherlands.
  • Bagnacani A; Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstraße 69, Rostock 18051, Germany.
  • Baker D; Johns Hopkins University, 3400 N Charles Street, Mudd Hall 144, Baltimore 21218, MD, USA.
  • Bhardwaj V; Department of Biology, Albert-Ludwigs-University, Schänzlestraße 1, Freiburg 79104, Germany.
  • Blank C; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Bretaudeau A; INRA, UMR IGEPP, BIPAA/GenOuest, INRIA/Irisa - Campus de Beaulieu, 35042 RENNES Cedex, France.
  • Brillet-Guéguen L; CNRS, UMPC, FR2424, ABiMS, Station Biologique, Roscoff, France.
  • Cech M; The Pennsylvania State University, 505 Wartik Lab, University Park, PA 16802, USA.
  • Chilton J; The Pennsylvania State University, 505 Wartik Lab, University Park, PA 16802, USA.
  • Clements D; Johns Hopkins University, 3400 N Charles Street, Mudd Hall 144, Baltimore 21218, MD, USA.
  • Doppelt-Azeroual O; Bioinformatics and Biostatistics HUB, Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI, USR 3756 Institut Pasteur et CNRS), Institut Pasteur, 25-28 Rue du Docteur Roux, 75015 Paris, France.
  • Erxleben A; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Freeberg MA; European Bioinformatics Institute, Hinxton, Cambridge, UK.
  • Gladman S; Melbourne Bioinformatics, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Hoogstrate Y; Erasmus Medical Centre, Wytemaweg 80, Rotterdam 3015 CN, the Netherlands.
  • Hotz HR; Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, Basel 4058, Switzerland.
  • Houwaart T; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Jagtap P; Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, 420 Delaware Street SE, Minneapolis, MN 55455, USA.
  • Larivière D; The Pennsylvania State University, 505 Wartik Lab, University Park, PA 16802, USA.
  • Le Corguillé G; PMC, CNRS, FR2424, ABiMS, Station Biologique, Place Georges Teissier, Roscoff 29680, France.
  • Manke T; Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, Freiburg 79108, Germany.
  • Mareuil F; Bioinformatics and Biostatistics HUB, Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI, USR 3756 Institut Pasteur et CNRS), Institut Pasteur, 25-28 Rue du Docteur Roux, 75015 Paris, France.
  • Ramírez F; Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, Freiburg 79108, Germany.
  • Ryan D; Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, Freiburg 79108, Germany.
  • Sigloch FC; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Soranzo N; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
  • Wolff J; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Videm P; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Wolfien M; Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstraße 69, Rostock 18051, Germany.
  • Wubuli A; Leibniz Institute for Farm Animal Biology (FBN), Wilhelm-Stahl-Allee 2, Dummerstorf 18196, Germany.
  • Yusuf D; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany.
  • Taylor J; Johns Hopkins University, 3400 N Charles Street, Mudd Hall 144, Baltimore 21218, MD, USA.
  • Backofen R; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany. Electronic address: backofen@informatik.uni-freiburg.de.
  • Nekrutenko A; The Pennsylvania State University, 505 Wartik Lab, University Park, PA 16802, USA. Electronic address: anton@nekrut.org.
  • Grüning B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, Freiburg 79110, Germany. Electronic address: gruening@informatik.uni-freiburg.de.
Cell Syst ; 6(6): 752-758.e1, 2018 06 27.
Article em En | MEDLINE | ID: mdl-29953864
ABSTRACT
The primary problem with the explosion of biomedical datasets is not the data, not computational resources, and not the required storage space, but the general lack of trained and skilled researchers to manipulate and analyze these data. Eliminating this problem requires development of comprehensive educational resources. Here we present a community-driven framework that enables modern, interactive teaching of data analytics in life sciences and facilitates the development of training materials. The key feature of our system is that it is not a static but a continuously improved collection of tutorials. By coupling tutorials with a web-based analysis framework, biomedical researchers can learn by performing computation themselves through a web browser without the need to install software or search for example datasets. Our ultimate goal is to expand the breadth of training materials to include fundamental statistical and data science topics and to precipitate a complete re-engineering of undergraduate and graduate curricula in life sciences. This project is accessible at https//training.galaxyproject.org.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Pesquisadores / Biologia Computacional Idioma: En Ano de publicação: 2018 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Pesquisadores / Biologia Computacional Idioma: En Ano de publicação: 2018 Tipo de documento: Article