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Development of Adverse Outcome Pathway for PPARγ Antagonism Leading to Pulmonary Fibrosis and Chemical Selection for Its Validation: ToxCast Database and a Deep Learning Artificial Neural Network Model-Based Approach.
Jeong, Jaeseong; Garcia-Reyero, Natalia; Burgoon, Lyle; Perkins, Edward; Park, Taehyun; Kim, Changheon; Roh, Ji-Yeon; Choi, Jinhee.
Afiliação
  • Jeong J; School of Environmental Engineering , University of Seoul , 163 Seoulsiripdae-ro , Dongdaemun-gu, Seoul 02504 , Republic of Korea.
  • Garcia-Reyero N; United States Army Engineer Research and Development Center (ERDC) Environmental Laboratory , 3909 Halls Ferry Road , Vicksburg , Mississippi 39180 , United States.
  • Burgoon L; United States Army Engineer Research and Development Center (ERDC) Environmental Laboratory , 3909 Halls Ferry Road , Vicksburg , Mississippi 39180 , United States.
  • Perkins E; United States Army Engineer Research and Development Center (ERDC) Environmental Laboratory , 3909 Halls Ferry Road , Vicksburg , Mississippi 39180 , United States.
  • Park T; School of Environmental Engineering , University of Seoul , 163 Seoulsiripdae-ro , Dongdaemun-gu, Seoul 02504 , Republic of Korea.
  • Kim C; Department of Computer Science , University of Seoul , 163 Seoulsiripdae-ro , Dongdaemun-gu, Seoul 02504 , Republic of Korea.
  • Roh JY; Knoell Korea , 37 Gukjegeumyung-ro 2-gil , Yeongdeungpo-gu, Seoul 07327 , Republic of Korea.
  • Choi J; School of Environmental Engineering , University of Seoul , 163 Seoulsiripdae-ro , Dongdaemun-gu, Seoul 02504 , Republic of Korea.
Chem Res Toxicol ; 32(6): 1212-1222, 2019 06 17.
Article em En | MEDLINE | ID: mdl-31074622
Exposure to certain chemicals such as disinfectants through inhalation is suspected to be involved in the development of pulmonary fibrosis, a lung disease in which lung tissue becomes damaged and scarred. Pulmonary fibrosis is known to be regulated by transforming growth factor ß (TGF-ß) and peroxisome proliferator-activated receptor gamma (PPARγ). Here, we developed an adverse outcome pathway (AOP) to better define the linkage of PPARγ antagonism to the adverse outcome of pulmonary fibrosis. We then conducted a systematic analysis to identify potential chemicals involved in this AOP, using the ToxCast database and deep learning artificial neural network models. We identified chemicals bearing a potential inhalation hazard and exposure hazards from the database that could be related to this AOP. For chemicals that were not present in the ToxCast database, multilayer perceptron models were developed based on the ToxCast assays related to the AOP. The reactivity of ToxCast untested chemicals was then predicted using these deep learning models. Both approaches identified a set of chemicals that could be used to validate the AOP. This study suggests that chemicals categorized using an existing database such as ToxCast can be used to validate an AOP and that deep learning approaches can be used to characterize a range of potential active chemicals for an AOP of interest.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Fibrose Pulmonar / Redes Neurais de Computação / PPAR gama / Rotas de Resultados Adversos / Aprendizado Profundo Idioma: En Ano de publicação: 2019 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Fibrose Pulmonar / Redes Neurais de Computação / PPAR gama / Rotas de Resultados Adversos / Aprendizado Profundo Idioma: En Ano de publicação: 2019 Tipo de documento: Article