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Transcriptome visualization and data availability at the Saccharomyces Genome Database.
Ng, Patrick C; Wong, Edith D; MacPherson, Kevin A; Aleksander, Suzi; Argasinska, Joanna; Dunn, Barbara; Nash, Robert S; Skrzypek, Marek S; Gondwe, Felix; Jha, Sagar; Karra, Kalpana; Weng, Shuai; Miyasato, Stuart; Simison, Matt; Engel, Stacia R; Cherry, J Michael.
Afiliação
  • Ng PC; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Wong ED; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • MacPherson KA; Oregon Health Sciences University, Portland, OR 97239, USA.
  • Aleksander S; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Argasinska J; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Dunn B; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Nash RS; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Skrzypek MS; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Gondwe F; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Jha S; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Karra K; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Weng S; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Miyasato S; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Simison M; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Engel SR; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
  • Cherry JM; Department of Genetics, Stanford University, Palo Alto, CA 94304-5477, USA.
Nucleic Acids Res ; 48(D1): D743-D748, 2020 01 08.
Article em En | MEDLINE | ID: mdl-31612944
ABSTRACT
The Saccharomyces Genome Database (SGD; www.yeastgenome.org) maintains the official annotation of all genes in the Saccharomyces cerevisiae reference genome and aims to elucidate the function of these genes and their products by integrating manually curated experimental data. Technological advances have allowed researchers to profile RNA expression and identify transcripts at high resolution. These data can be configured in web-based genome browser applications for display to the general public. Accordingly, SGD has incorporated published transcript isoform data in our instance of JBrowse, a genome visualization platform. This resource will help clarify S. cerevisiae biological processes by furthering studies of transcriptional regulation, untranslated regions, genome engineering, and expression quantification in S. cerevisiae.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Saccharomyces cerevisiae / Genoma Fúngico / Proteínas de Saccharomyces cerevisiae / Transcriptoma Idioma: En Ano de publicação: 2020 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Saccharomyces cerevisiae / Genoma Fúngico / Proteínas de Saccharomyces cerevisiae / Transcriptoma Idioma: En Ano de publicação: 2020 Tipo de documento: Article