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Parallel Implementation of Density Functional Theory Methods in the Quantum Interaction Computational Kernel Program.
Manathunga, Madushanka; Miao, Yipu; Mu, Dawei; Götz, Andreas W; Merz, Kenneth M.
Afiliação
  • Manathunga M; Department of Chemistry and Department of Biochemistry and Molecular Biology, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824-1322, United States.
  • Miao Y; Facebook, 1 Hacker Way, Menlo Park, California 94025, United States.
  • Mu D; National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, 1205 W Clark St, Urbana, Illinois 61801, United States.
  • Götz AW; San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0505, United States.
  • Merz KM; Department of Chemistry and Department of Biochemistry and Molecular Biology, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824-1322, United States.
J Chem Theory Comput ; 16(7): 4315-4326, 2020 Jul 14.
Article em En | MEDLINE | ID: mdl-32511916
ABSTRACT
We present the details of a graphics processing unit (GPU) capable exchange correlation (XC) scheme integrated into the open source QUantum Interaction Computational Kernel (QUICK) program. Our implementation features an octree based numerical grid point partitioning scheme, GPU enabled grid pruning and basis and primitive function prescreening, and fully GPU capable XC energy and gradient algorithms. Benchmarking against the CPU version demonstrated that the GPU implementation is capable of delivering an impressive performance while retaining excellent accuracy. For small to medium size protein/organic molecular systems, the realized speedups in double precision XC energy and gradient computation on a NVIDIA V100 GPU were 60-80-fold and 140-500-fold, respectively, as compared to the serial CPU implementation. The acceleration gained in density functional theory calculations from a single V100 GPU significantly exceeds that of a modern CPU with 40 cores running in parallel.

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2020 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2020 Tipo de documento: Article