RNA-Seq analysis of genes affected by Cyclophilin A/DIAGEOTROPICA (DGT) in tomato root development.
F1000Res
; 9: 1175, 2020.
Article
em En
| MEDLINE
| ID: mdl-33123350
ABSTRACT
Cyclophilin A/DIAGEOTROPICA (DGT) has been linked to auxin-regulated development in tomato and appears to affect multiple developmental pathways. Loss of DGT function results in a pleiotropic phenotype that is strongest in the roots, including shortened roots with no lateral branching. Here, we present an RNA-Seq dataset comparing the gene expression profiles of wildtype ('Ailsa Craig') and dgt tissues from three spatially separated developmental stages of the tomato root tip, with three replicates for each tissue and genotype. We also identify differentially expressed genes, provide an initial comparison of genes affected in each genotype and tissue, and provide the pipeline used to analyze the data. Further analysis of this dataset can be used to gain insight into the effects of DGT on various root developmental pathways in tomato.
Palavras-chave
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Solanum lycopersicum
Idioma:
En
Ano de publicação:
2020
Tipo de documento:
Article