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iNucs: inter-nucleosome interactions.
Oveisi, Mehrdad; Shukla, Manu; Seymen, Nogayhan; Ohno, Masae; Taniguchi, Yuichi; Nahata, Sunil; Loos, Remco; Mufti, Ghulam J; Allshire, Robin C; Dimitrov, Stefan; Karimi, Mohammad M.
Afiliação
  • Oveisi M; Comprehensive Cancer Centre, School of Cancer & Pharmaceutical Sciences, Faculty of Life Sciences & Medicine, King's College London, London SE5 8AF, UK.
  • Shukla M; Wellcome Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
  • Seymen N; Comprehensive Cancer Centre, School of Cancer & Pharmaceutical Sciences, Faculty of Life Sciences & Medicine, King's College London, London SE5 8AF, UK.
  • Ohno M; Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-Honmachi, Sakyo-ku, Kyoto 606-8501, Japan.
  • Taniguchi Y; Laboratory for Cell Systems Control, RIKEN Center for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan.
  • Nahata S; Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-Honmachi, Sakyo-ku, Kyoto 606-8501, Japan.
  • Loos R; Laboratory for Cell Systems Control, RIKEN Center for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan.
  • Mufti GJ; Institute for Advanced Biosciences, Inserm U 1209, CNRS UMR 5309, Université Grenoble Alpes, 38000 Grenoble, France.
  • Allshire RC; BMS Center for Innovation and Translational Research Europe (CITRE, a Bristol Myers Squibb Company), Pabellón de Italia, 41092 Sevilla, Spain.
  • Dimitrov S; Comprehensive Cancer Centre, School of Cancer & Pharmaceutical Sciences, Faculty of Life Sciences & Medicine, King's College London, London SE5 8AF, UK.
  • Karimi MM; Wellcome Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
Bioinformatics ; 37(23): 4562-4563, 2021 12 07.
Article em En | MEDLINE | ID: mdl-34623394
MOTIVATION: Deciphering nucleosome-nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available. RESULTS: We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools. AVAILABILITYAND IMPLEMENTATION: https://github.com/Karimi-Lab/inucs/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Nucleossomos Idioma: En Ano de publicação: 2021 Tipo de documento: Article
Texto completo
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Nucleossomos Idioma: En Ano de publicação: 2021 Tipo de documento: Article