ViroidDB: a database of viroids and viroid-like circular RNAs.
Nucleic Acids Res
; 50(D1): D432-D438, 2022 01 07.
Article
em En
| MEDLINE
| ID: mdl-34751403
ABSTRACT
We introduce ViroidDB, a value-added database that attempts to collect all known viroid and viroid-like circular RNA sequences into a single resource. Spanning about 10 000 unique sequences, ViroidDB includes viroids, retroviroid-like elements, small circular satellite RNAs, ribozyviruses, and retrozymes. Each sequence's secondary structure, ribozyme content, and cluster membership are predicted via a custom pipeline optimized for handling circular RNAs. The data can be explored via a purpose-built user interface that features visualizations, multiple sequence alignments, and a portal for downloading bulk data. Users can browse the data by sequence type, taxon, or typo-tolerant search of metadata fields. The database is freely accessible at https//viroids.org.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Viroides
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Software
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RNA Viral
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RNA Catalítico
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Bases de Dados de Ácidos Nucleicos
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RNA Circular
Idioma:
En
Ano de publicação:
2022
Tipo de documento:
Article