High-Throughput Evolutionary Comparative Analysis of Long Intergenic Noncoding RNAs in Multiple Organisms.
Methods Mol Biol
; 2512: 45-60, 2022.
Article
em En
| MEDLINE
| ID: mdl-35817998
ABSTRACT
Comparative genomic and transcriptomic analyses can help prioritize and facilitate the functional analysis of long noncoding RNAs (lncRNAs). Evolinc-II is a bioinformatic pipeline that automates comparative analyses, searching for sequence and structural conservation for thousands of lncRNAs at once. In addition, Evolinc-II takes a phylogenetic approach to infer key evolutionary events that may have occurred during the emergence of each query lncRNA. Here, we describe how to use command line or GUI (CyVerse's Discovery Environment) versions of Evolinc-II to identify lncRNA homologs and prioritize them for functional analysis.
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1
Base de dados:
MEDLINE
Assunto principal:
RNA Longo não Codificante
Idioma:
En
Ano de publicação:
2022
Tipo de documento:
Article