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GlobeCorr: interactive globe-based visualization for correlation datasets.
Arab, Mariam; Woods, Nolan; Garlock, Emma S; Winsor, Geoffrey L; Parks, Jaclyn P; Jia, Baofeng; Doiron, Dany; Takaro, Tim K; Brook, Jeffrey R; Brinkman, Fiona S L.
Afiliação
  • Arab M; Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Woods N; Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Garlock ES; Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Winsor GL; Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Parks JP; Faculty of Health Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Jia B; Cancer Control Research, BC Cancer Research Institute, Vancouver, BC V5Z 1L3, Canada.
  • Doiron D; Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Takaro TK; Research Institute of McGill University Health Centre, Montreal, QC H4A 3J1, Canada.
  • Brook JR; Faculty of Health Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
  • Brinkman FSL; Dalla Lana School of Public Health, University of Toronto, Toronto, ON M5T 3M7, Canada.
Bioinform Adv ; 3(1): vbac099, 2023.
Article em En | MEDLINE | ID: mdl-36698766
ABSTRACT
Motivation Increasingly complex omics datasets are being generated, along with associated diverse categories of metadata (environmental, clinical, etc.). Looking at the correlation between these variables can be critical to identify potential confounding factors and novel relationships. To date, some correlation globe software has been developed to aid investigations; however, they lack secure, dynamic visualization capability.

Results:

GlobeCorr.ca is a web-based application designed to provide user-friendly, interactive visualization and analysis of correlation datasets. Users load tabular data listing pairwise variables and their correlation values, and GlobeCorr creates a dynamic visualization using ribbons to represent positive and negative correlations, optionally grouped by domain/category (such as microbiome taxa against other metadata). GlobeCorr runs securely (locally on a user's computer) and provides a simple method for users to visualize and summarize complex datasets. This tool is applicable to a wide range of disciplines and domains of interest, including the bioinformatics/microbiome and metadata examples provided within. Availability and Implementation See https//GlobeCorr.ca; Code provided under an open source MIT license https//github.com/brinkmanlab/globecorr.

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2023 Tipo de documento: Article