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A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae).
Li, Qiye; Guo, Qunfei; Zhou, Yang; Tan, Huishuang; Bertozzi, Terry; Zhu, Yuanzhen; Li, Ji; Donnellan, Stephen; Zhang, Guojie.
Afiliação
  • Li Q; BGI-Shenzhen, Shenzhen 518083, China.
  • Guo Q; BGI-Shenzhen, Shenzhen 518083, China.
  • Zhou Y; College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.
  • Tan H; BGI-Shenzhen, Shenzhen 518083, China.
  • Bertozzi T; BGI-Shenzhen, Shenzhen 518083, China.
  • Zhu Y; Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 611731, China.
  • Li J; South Australian Museum, North Terrace, Adelaide 5000, Australia.
  • Donnellan S; School of Biological Sciences, University of Adelaide, North Terrace, Adelaide 5005, Australia.
  • Zhang G; BGI-Shenzhen, Shenzhen 518083, China.
GigaByte ; 2020: gigabyte2, 2020.
Article em En | MEDLINE | ID: mdl-36824594
ABSTRACT
Amphibian genomes are usually challenging to assemble due to their large genome size and high repeat content. The Limnodynastidae is a family of frogs native to Australia, Tasmania and New Guinea. As an anuran lineage that successfully diversified on the Australian continent, it represents an important lineage in the amphibian tree of life but lacks reference genomes. Here we sequenced and annotated the genome of the eastern banjo frog Limnodynastes dumerilii dumerilii to fill this gap. The total length of the genome assembly is 2.38 Gb with a scaffold N50 of 285.9 kb. We identified 1.21 Gb of non-redundant sequences as repetitive elements and annotated 24,548 protein-coding genes in the assembly. BUSCO assessment indicated that more than 94% of the expected vertebrate genes were present in the genome assembly and the gene set. We anticipate that this annotated genome assembly will advance the future study of anuran phylogeny and amphibian genome evolution.

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2020 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2020 Tipo de documento: Article