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A deep-learning algorithm to classify skin lesions from mpox virus infection.
Thieme, Alexander H; Zheng, Yuanning; Machiraju, Gautam; Sadee, Chris; Mittermaier, Mirja; Gertler, Maximilian; Salinas, Jorge L; Srinivasan, Krithika; Gyawali, Prashnna; Carrillo-Perez, Francisco; Capodici, Angelo; Uhlig, Maximilian; Habenicht, Daniel; Löser, Anastassia; Kohler, Maja; Schuessler, Maximilian; Kaul, David; Gollrad, Johannes; Ma, Jackie; Lippert, Christoph; Billick, Kendall; Bogoch, Isaac; Hernandez-Boussard, Tina; Geldsetzer, Pascal; Gevaert, Olivier.
Afiliação
  • Thieme AH; Department of Medicine, Stanford University, Stanford, CA, USA. thieme@stanford.edu.
  • Zheng Y; Stanford Center for Biomedical Informatics Research (BMIR), Department of Biomedical Data Science, Stanford University, Stanford, USA. thieme@stanford.edu.
  • Machiraju G; Department of Radiation Oncology, Charité-Universitätsmedizin Berlin, Berlin, Germany. thieme@stanford.edu.
  • Sadee C; Berlin Institute of Health at Charité-Universitätsmedizin Berlin, BIH Biomedical Innovation Academy, BIH Charité Digital Clinician Scientist Program, Berlin, Berlin, Germany. thieme@stanford.edu.
  • Mittermaier M; Department of Medicine, Stanford University, Stanford, CA, USA.
  • Gertler M; Stanford Center for Biomedical Informatics Research (BMIR), Department of Biomedical Data Science, Stanford University, Stanford, USA.
  • Salinas JL; Department of Biomedical Data Science, Stanford University, Stanford, CA, USA.
  • Srinivasan K; Department of Medicine, Stanford University, Stanford, CA, USA.
  • Gyawali P; Stanford Center for Biomedical Informatics Research (BMIR), Department of Biomedical Data Science, Stanford University, Stanford, USA.
  • Carrillo-Perez F; Berlin Institute of Health at Charité-Universitätsmedizin Berlin, BIH Biomedical Innovation Academy, BIH Charité Digital Clinician Scientist Program, Berlin, Berlin, Germany.
  • Capodici A; Department of Infectious Diseases and Respiratory Medicine, Charité-Universitätsmedizin Berlin, Berlin, Germany.
  • Uhlig M; Institute of Tropical Medicine and International Health, Charité-Universitätsmedizin Berlin, Berlin, Germany.
  • Habenicht D; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University, Stanford, CA, USA.
  • Löser A; Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University, Stanford, CA, USA.
  • Kohler M; Department of Medicine, Stanford University, Stanford, CA, USA.
  • Schuessler M; Department of Medicine, Stanford University, Stanford, CA, USA.
  • Kaul D; Stanford Center for Biomedical Informatics Research (BMIR), Department of Biomedical Data Science, Stanford University, Stanford, USA.
  • Gollrad J; Department of Architecture and Computer Technology (ATC), University of Granada, Granada, Spain.
  • Ma J; Department of Medicine, Stanford University, Stanford, CA, USA.
  • Lippert C; Stanford Center for Biomedical Informatics Research (BMIR), Department of Biomedical Data Science, Stanford University, Stanford, USA.
  • Billick K; Department of Biomedical and Neuromotor Science, Alma Mater Studiorum-University of Bologna, Bologna, Italy.
  • Bogoch I; Department of Medicine, Justus-Liebig-Universität Gießen, Gießen, Germany.
  • Hernandez-Boussard T; Technical University Berlin, Berlin, Germany.
  • Geldsetzer P; Department of Radiotherapy, University Medical Center Schleswig-Holstein, Lübeck, Germany.
  • Gevaert O; Heidelberg Institute of Global Health, Heidelberg University Hospital, Heidelberg, Germany.
Nat Med ; 29(3): 738-747, 2023 03.
Article em En | MEDLINE | ID: mdl-36864252
ABSTRACT
Undetected infection and delayed isolation of infected individuals are key factors driving the monkeypox virus (now termed mpox virus or MPXV) outbreak. To enable earlier detection of MPXV infection, we developed an image-based deep convolutional neural network (named MPXV-CNN) for the identification of the characteristic skin lesions caused by MPXV. We assembled a dataset of 139,198 skin lesion images, split into training/validation and testing cohorts, comprising non-MPXV images (n = 138,522) from eight dermatological repositories and MPXV images (n = 676) from the scientific literature, news articles, social media and a prospective cohort of the Stanford University Medical Center (n = 63 images from 12 patients, all male). In the validation and testing cohorts, the sensitivity of the MPXV-CNN was 0.83 and 0.91, the specificity was 0.965 and 0.898 and the area under the curve was 0.967 and 0.966, respectively. In the prospective cohort, the sensitivity was 0.89. The classification performance of the MPXV-CNN was robust across various skin tones and body regions. To facilitate the usage of the algorithm, we developed a web-based app by which the MPXV-CNN can be accessed for patient guidance. The capability of the MPXV-CNN for identifying MPXV lesions has the potential to aid in MPXV outbreak mitigation.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Mpox / Aprendizado Profundo Idioma: En Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Mpox / Aprendizado Profundo Idioma: En Ano de publicação: 2023 Tipo de documento: Article