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FAIR and scalable management of small-angle X-ray scattering data.
Giess, Torsten; Itzigehl, Selina; Range, Jan; Schömig, Richard; Bruckner, Johanna R; Pleiss, Jürgen.
Afiliação
  • Giess T; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart 70569, Germany.
  • Itzigehl S; Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany.
  • Range J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart 70569, Germany.
  • Schömig R; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart 70569, Germany.
  • Bruckner JR; Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany.
  • Pleiss J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart 70569, Germany.
J Appl Crystallogr ; 56(Pt 2): 565-575, 2023 Apr 01.
Article em En | MEDLINE | ID: mdl-37032968
ABSTRACT
A modular research data management toolbox based on the programming language Python, the widely used computing platform Jupyter Notebook, the standardized data exchange format for analytical data (AnIML) and the generic repository Dataverse has been established and applied to analyze small-angle X-ray scattering (SAXS) data according to the FAIR data principles (findable, accessible, interoperable and reusable). The SAS-tools library is a community-driven effort to develop tools for data acquisition, analysis, visualization and publishing of SAXS data. Metadata from the experiment and the results of data analysis are stored as an AnIML document using the novel Python-native pyAnIML API. The AnIML document, measured raw data and plots resulting from the analysis are combined into an archive in OMEX format and uploaded to Dataverse using the novel easyDataverse API, which makes each data set accessible via a unique DOI and searchable via a structured metadata block. SAS-tools is applied to study the effects of alkyl chain length and counterions on the phase diagrams of alkyltrimethyl-ammonium surfactants in order to demonstrate the feasibility and usefulness of a scalable data management workflow for experiments in physical chemistry.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2023 Tipo de documento: Article