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The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami.
Doye, Jonathan P K; Fowler, Hannah; Presern, Domen; Bohlin, Joakim; Rovigatti, Lorenzo; Romano, Flavio; Sulc, Petr; Wong, Chak Kui; Louis, Ard A; Schreck, John S; Engel, Megan C; Matthies, Michael; Benson, Erik; Poppleton, Erik; Snodin, Benedict E K.
Afiliação
  • Doye JPK; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK. jonathan.doye@chem.ox.ac.uk.
  • Fowler H; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK.
  • Presern D; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK.
  • Bohlin J; Department of Physics, Clarendon Laboratory, University of Oxford, Oxford, UK.
  • Rovigatti L; Dipartimento di Fisica, Sapienza Universitá di Roma, Rome, Italy.
  • Romano F; Dipartimento di Fisica, Sapienza Universitá di Roma, Rome, Italy.
  • Sulc P; School of Molecular Sciences and Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
  • Wong CK; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK.
  • Louis AA; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Parks Road, Oxford, UK.
  • Schreck JS; Computational and Information Systems Laboratory, National Center for Atmospheric Research (NCAR), Boulder, USA.
  • Engel MC; School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA.
  • Matthies M; School of Molecular Sciences and Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
  • Benson E; Department of Physics, Clarendon Laboratory, University of Oxford, Oxford, UK.
  • Poppleton E; School of Molecular Sciences and Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
  • Snodin BEK; Department of Philosophy, Future of Humanity Institute, University of Oxford, Oxford, UK.
Methods Mol Biol ; 2639: 93-112, 2023.
Article em En | MEDLINE | ID: mdl-37166713
ABSTRACT
This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: DNA / Simulação de Dinâmica Molecular Idioma: En Ano de publicação: 2023 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: DNA / Simulação de Dinâmica Molecular Idioma: En Ano de publicação: 2023 Tipo de documento: Article