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ELIXIR and Toxicology: a community in development.
Martens, Marvin; Stierum, Rob; Schymanski, Emma L; Evelo, Chris T; Aalizadeh, Reza; Aladjov, Hristo; Arturi, Kasia; Audouze, Karine; Babica, Pavel; Berka, Karel; Bessems, Jos; Blaha, Ludek; Bolton, Evan E; Cases, Montserrat; Damalas, Dimitrios Ε; Dave, Kirtan; Dilger, Marco; Exner, Thomas; Geerke, Daan P; Grafström, Roland; Gray, Alasdair; Hancock, John M; Hollert, Henner; Jeliazkova, Nina; Jennen, Danyel; Jourdan, Fabien; Kahlem, Pascal; Klanova, Jana; Kleinjans, Jos; Kondic, Todor; Kone, Boï; Lynch, Iseult; Maran, Uko; Martinez Cuesta, Sergio; Ménager, Hervé; Neumann, Steffen; Nymark, Penny; Oberacher, Herbert; Ramirez, Noelia; Remy, Sylvie; Rocca-Serra, Philippe; Salek, Reza M; Sallach, Brett; Sansone, Susanna-Assunta; Sanz, Ferran; Sarimveis, Haralambos; Sarntivijai, Sirarat; Schulze, Tobias; Slobodnik, Jaroslav; Spjuth, Ola.
Afiliação
  • Martens M; Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.
  • Stierum R; Risk Analysis for Products In Development (RAPID), Netherlands Organisation for applied scientific research TNO, Utrecht, 3584 CB, The Netherlands.
  • Schymanski EL; Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, 4367, Luxembourg.
  • Evelo CT; Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.
  • Aalizadeh R; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, 6229 EN, The Netherlands.
  • Aladjov H; Laboratory of Analytical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Athens, 15771, Greece.
  • Arturi K; Institute of Biophysics and Biomedical Engineering, Bulgarian Academy of Sciences, Sofia, 1113, Bulgaria.
  • Audouze K; Department Environmental Chemistry, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, 8600, Switzerland.
  • Babica P; Université de Paris, Paris, F-75006, France.
  • Berka K; RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
  • Bessems J; Department of Physical Chemistry, Palacky University Olomouc, Olomouc, 77146, Czech Republic.
  • Blaha L; Unit Health, VITO, Mol, 2400, Belgium.
  • Bolton EE; RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
  • Cases M; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
  • Damalas DΕ; Chemotargets SL, Barcelona, 08028, Spain.
  • Dave K; Laboratory of Analytical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Athens, 15771, Greece.
  • Dilger M; School of Science, GSFC University, Gujarat, 391750, India.
  • Exner T; Forschungs- und Beratungsinstitut Gefahrstoffe (FoBiG) GmbH, Freiburg im Breisgau, 79106, Germany.
  • Geerke DP; Seven Past Nine, Cerknica, 1380, Slovenia.
  • Grafström R; AIMMS Division of Molecular Toxicology, Vrije Universiteit, Amsterdam, 1081 HZ, The Netherlands.
  • Gray A; Department of Toxicology, Misvik Biology, Turku, 20520, Finland.
  • Hancock JM; Institute of Environmental Medicine, Karolinska Institute, Stockholm, 17177, Sweden.
  • Hollert H; Department of Computer Science, Heriot-Watt University, Edinburgh, UK.
  • Jeliazkova N; ELIXIR Hub, Wellcome Genome Campus, Cambridge, CB10 1SD, UK.
  • Jennen D; Department Evolutionary Ecology & Environmental Toxicology (E3T), Goethe-University, Frankfurt, D-60438, Germany.
  • Jourdan F; Ideaconsult Ltd., Sofia, Bulgaria.
  • Kahlem P; Department of Toxicogenomics, Maastricht University, Maastricht, 6200 MD, The Netherlands.
  • Klanova J; MetaboHUB, French metabolomics infrastructure in Metabolomics and Fluxomics, Toulouse, France.
  • Kleinjans J; Toxalim (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France.
  • Kondic T; Scientific Network Management SL, Barcelona, 08015, Spain.
  • Kone B; RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
  • Lynch I; Department of Toxicogenomics, Maastricht University, Maastricht, 6200 MD, The Netherlands.
  • Maran U; Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, 4367, Luxembourg.
  • Martinez Cuesta S; Faculty of Pharmacy, Malaria Research and Training Center, Bamako, BP:1805, Mali.
  • Ménager H; School of Geography, Earth and Environmental Sciences, University of Birmingham, UK, Birmingham, B15 2TT, UK.
  • Neumann S; Institute of Chemistry, University of Tartu, Tartu, 50411, Estonia.
  • Nymark P; Data Sciences and Quantitative Biology, Discovery Sciences, AstraZeneca, Cambridge, UK.
  • Oberacher H; Institut Français de Bioinformatique, Evry, F-91000, France.
  • Ramirez N; Bioinformatics and Biostatistics Hub, Institut Pasteur, Paris, F-75015, France.
  • Remy S; Research group Bioinformatics and Scientific Data, Leibniz Institute of Plant Biochemistry, Halle, 06120, Germany.
  • Rocca-Serra P; Institute of Environmental Medicine, Karolinska Institute, Stockholm, 17177, Sweden.
  • Salek RM; Institute of Legal Medicine and Core Facility Metabolomics, Medical University of Innsbruck, Innsbruck, A-6020, Austria.
  • Sallach B; Institut d'Investigacio Sanitaria Pere Virgili-Universitat Rovira i Virgili, Tarragona, 43007, Spain.
  • Sansone SA; Unit Health, VITO, Mol, 2400, Belgium.
  • Sanz F; Data Readiness Group, Department of Engineering Science, University of Oxford, Oxford, UK.
  • Sarimveis H; International Agency for Research on Cancer, World Health Organisation, Lyon, 69372, France.
  • Sarntivijai S; Department of Environment and Geography, University of York, UK, York, YO10 5NG, UK.
  • Schulze T; Data Readiness Group, Department of Engineering Science, University of Oxford, Oxford, UK.
  • Slobodnik J; Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences, Pompeu Fabra University, Barcelona, 08003, Spain.
  • Spjuth O; National Technical University of Athens, Athens, 15780, Greece.
F1000Res ; 102021.
Article em En | MEDLINE | ID: mdl-37842337
ABSTRACT
Toxicology has been an active research field for many decades, with academic, industrial and government involvement. Modern omics and computational approaches are changing the field, from merely disease-specific observational models into target-specific predictive models. Traditionally, toxicology has strong links with other fields such as biology, chemistry, pharmacology and medicine. With the rise of synthetic and new engineered materials, alongside ongoing prioritisation needs in chemical risk assessment for existing chemicals, early predictive evaluations are becoming of utmost importance to both scientific and regulatory purposes. ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. To coordinate the linkage of various life science efforts around modern predictive toxicology, the establishment of a new ELIXIR Community is seen as instrumental. In the past few years, joint efforts, building on incidental overlap, have been piloted in the context of ELIXIR. For example, the EU-ToxRisk, diXa, HeCaToS, transQST, and the nanotoxicology community have worked with the ELIXIR TeSS, Bioschemas, and Compute Platforms and activities. In 2018, a core group of interested parties wrote a proposal, outlining a sketch of what this new ELIXIR Toxicology Community would look like. A recent workshop (held September 30th to October 1st, 2020) extended this into an ELIXIR Toxicology roadmap and a shortlist of limited investment-high gain collaborations to give body to this new community. This Whitepaper outlines the results of these efforts and defines our vision of the ELIXIR Toxicology Community and how it complements other ELIXIR activities.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Disciplinas das Ciências Biológicas Idioma: En Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Disciplinas das Ciências Biológicas Idioma: En Ano de publicação: 2021 Tipo de documento: Article