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Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.
Renton, Angela I; Dao, Thuy T; Johnstone, Tom; Civier, Oren; Sullivan, Ryan P; White, David J; Lyons, Paris; Slade, Benjamin M; Abbott, David F; Amos, Toluwani J; Bollmann, Saskia; Botting, Andy; Campbell, Megan E J; Chang, Jeryn; Close, Thomas G; Dörig, Monika; Eckstein, Korbinian; Egan, Gary F; Evas, Stefanie; Flandin, Guillaume; Garner, Kelly G; Garrido, Marta I; Ghosh, Satrajit S; Grignard, Martin; Halchenko, Yaroslav O; Hannan, Anthony J; Heinsfeld, Anibal S; Huber, Laurentius; Hughes, Matthew E; Kaczmarzyk, Jakub R; Kasper, Lars; Kuhlmann, Levin; Lou, Kexin; Mantilla-Ramos, Yorguin-Jose; Mattingley, Jason B; Meier, Michael L; Morris, Jo; Narayanan, Akshaiy; Pestilli, Franco; Puce, Aina; Ribeiro, Fernanda L; Rogasch, Nigel C; Rorden, Chris; Schira, Mark M; Shaw, Thomas B; Sowman, Paul F; Spitz, Gershon; Stewart, Ashley W; Ye, Xincheng; Zhu, Judy D.
Afiliação
  • Renton AI; The University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia. angie.renton23@gmail.com.
  • Dao TT; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia. angie.renton23@gmail.com.
  • Johnstone T; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.
  • Civier O; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
  • Sullivan RP; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
  • White DJ; The University of Sydney, School of Biomedical Engineering, Sydney, New South Wales, Australia.
  • Lyons P; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
  • Slade BM; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
  • Abbott DF; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
  • Amos TJ; The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Victoria, Australia.
  • Bollmann S; School of Life Science and Technology, University of Electronic Science and Technology, Chengdu, China.
  • Botting A; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.
  • Campbell MEJ; Australian Research Data Commons (ARDC), Sydney, New South Wales, Australia.
  • Chang J; School of Psychological Sciences, University of Newcastle, Newcastle, New South Wales, Australia.
  • Close TG; Hunter Medical Research Institute Imaging Centre, Newcastle, New South Wales, Australia.
  • Dörig M; The University of Queensland, School of Biomedical Sciences, St Lucia, Brisbane, Queensland, Australia.
  • Eckstein K; The University of Sydney, School of Biomedical Engineering, Sydney, New South Wales, Australia.
  • Egan GF; Integrative Spinal Research, Department of Chiropractic Medicine, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.
  • Evas S; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.
  • Flandin G; The Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Victoria, Australia.
  • Garner KG; Monash Biomedical Imaging, Monash University, Melbourne, Victoria, Australia.
  • Garrido MI; School of Psychology, University of Adelaide, Adelaide, South Australia, Australia.
  • Ghosh SS; Human Health, Health & Biosecurity, CSIRO, Adelaide, South Australia, Australia.
  • Grignard M; Wellcome Centre for Human Neuroimaging, University College London, London, UK.
  • Halchenko YO; School of Psychology, University of New South Wales, Sydney, New South Wales, Australia.
  • Hannan AJ; The University of Queensland, School of Psychology, St Lucia, Brisbane, Queensland, Australia.
  • Heinsfeld AS; Melbourne School of Psychological Sciences, he University of Melbourne, Melbourne, Victoria, Australia.
  • Huber L; Graeme Clark Institute for Biomedical Engineering, The University of Melbourne, Melbourne, Victoria, Australia.
  • Hughes ME; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
  • Kaczmarzyk JR; Department of Otolaryngology - Head and Neck Surgery, Harvard Medical School, Boston, MA, USA.
  • Kasper L; GIGA CRC In-Vivo Imaging, University of Liège, Liège, Belgium.
  • Kuhlmann L; Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA.
  • Lou K; The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Victoria, Australia.
  • Mantilla-Ramos YJ; Department of Psychology, Center for Perceptual Systems, Institute for Neuroscience, Center For Learning and Memory, The University of Texas at Austin, Austin, TX, USA.
  • Mattingley JB; National Institute of Mental Health (NIMH), National Institutes Health, Bethesda, MD, USA.
  • Meier ML; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia.
  • Morris J; Department of Biomedical Informatics, Stony Brook University, New York, NY, USA.
  • Narayanan A; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, New York, NY, USA.
  • Pestilli F; BRAIN-TO Lab, Krembil Brain Institute, University Health Network, Toronto, Ontario, Canada.
  • Puce A; Translational Neuromodeling Unit, Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Zurich, Switzerland.
  • Ribeiro FL; Department of Data Science and AI, Faculty of Information Technology, Monash University, Melbourne, Victoria, Australia.
  • Rogasch NC; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.
  • Rorden C; Department of Biomedical Engineering, Southern University of Science and Technology, Shenzhen, China.
  • Schira MM; Grupo Neuropsicología y Conducta (GRUNECO), Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia.
  • Shaw TB; The University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia.
  • Sowman PF; The University of Queensland, School of Psychology, St Lucia, Brisbane, Queensland, Australia.
  • Spitz G; Integrative Spinal Research, Department of Chiropractic Medicine, Balgrist University Hospital, University of Zurich, Zurich, Switzerland.
  • Stewart AW; Australian Research Data Commons (ARDC), Sydney, New South Wales, Australia.
  • Ye X; School of Computer Science, The University of Auckland, Auckland, New Zealand.
  • Zhu JD; Department of Psychology, Center for Perceptual Systems, Institute for Neuroscience, Center For Learning and Memory, The University of Texas at Austin, Austin, TX, USA.
Nat Methods ; 21(5): 804-808, 2024 May.
Article em En | MEDLINE | ID: mdl-38191935
ABSTRACT
Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https//www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Neuroimagem Idioma: En Ano de publicação: 2024 Tipo de documento: Article
Texto completo
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XML
PubMed Links
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Neuroimagem Idioma: En Ano de publicação: 2024 Tipo de documento: Article