KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction.
Bioinformatics
; 40(3)2024 03 04.
Article
em En
| MEDLINE
| ID: mdl-38444086
ABSTRACT
MOTIVATION KaMRaT is designed for processing large k-mer count tables derived from multi-sample, RNA-seq data. Its primary objective is to identify condition-specific or differentially expressed sequences, regardless of gene or transcript annotation. RESULTS:
KaMRaT is implemented in C++. Major functions include scoring k-mers based on count statistics, merging overlapping k-mers into contigs and selecting k-mers based on their occurrence across specific samples. AVAILABILITY AND IMPLEMENTATION Source code and documentation are available via https//github.com/Transipedia/KaMRaT.
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Ano de publicação:
2024
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Article