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Blueprinting extendable nanomaterials with standardized protein blocks.
Huddy, Timothy F; Hsia, Yang; Kibler, Ryan D; Xu, Jinwei; Bethel, Neville; Nagarajan, Deepesh; Redler, Rachel; Leung, Philip J Y; Weidle, Connor; Courbet, Alexis; Yang, Erin C; Bera, Asim K; Coudray, Nicolas; Calise, S John; Davila-Hernandez, Fatima A; Han, Hannah L; Carr, Kenneth D; Li, Zhe; McHugh, Ryan; Reggiano, Gabriella; Kang, Alex; Sankaran, Banumathi; Dickinson, Miles S; Coventry, Brian; Brunette, T J; Liu, Yulai; Dauparas, Justas; Borst, Andrew J; Ekiert, Damian; Kollman, Justin M; Bhabha, Gira; Baker, David.
Afiliação
  • Huddy TF; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Hsia Y; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Kibler RD; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Xu J; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Bethel N; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Nagarajan D; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Redler R; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Leung PJY; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Weidle C; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Courbet A; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Yang EC; M.S. Ramaiah University of Applied Sciences, Bengaluru, India.
  • Bera AK; Department of Cell Biology, NYU School of Medicine, New York, NY, USA.
  • Coudray N; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Calise SJ; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Davila-Hernandez FA; Molecular Engineering and Sciences Institute, University of Washington, Seattle, WA, USA.
  • Han HL; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Carr KD; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Li Z; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • McHugh R; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Reggiano G; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.
  • Kang A; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Sankaran B; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Dickinson MS; Biological Physics, Structure and Design, University of Washington, Seattle, WA, USA.
  • Coventry B; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Brunette TJ; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Liu Y; Department of Cell Biology, NYU School of Medicine, New York, NY, USA.
  • Dauparas J; Applied Bioinformatics Laboratories, NYU School of Medicine, New York, NY, USA.
  • Borst AJ; Division of Precision Medicine, Department of Medicine, NYU Grossman School of Medicine, New York, NY, USA.
  • Ekiert D; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Kollman JM; Department of Biochemistry, University of Washington, Seattle, WA, USA.
  • Bhabha G; Institute for Protein Design, University of Washington, Seattle, WA, USA.
  • Baker D; Department of Biochemistry, University of Washington, Seattle, WA, USA.
Nature ; 627(8005): 898-904, 2024 Mar.
Article em En | MEDLINE | ID: mdl-38480887
ABSTRACT
A wooden house frame consists of many different lumber pieces, but because of the regularity of these building blocks, the structure can be designed using straightforward geometrical principles. The design of multicomponent protein assemblies, in comparison, has been much more complex, largely owing to the irregular shapes of protein structures1. Here we describe extendable linear, curved and angled protein building blocks, as well as inter-block interactions, that conform to specified geometric standards; assemblies designed using these blocks inherit their extendability and regular interaction surfaces, enabling them to be expanded or contracted by varying the number of modules, and reinforced with secondary struts. Using X-ray crystallography and electron microscopy, we validate nanomaterial designs ranging from simple polygonal and circular oligomers that can be concentrically nested, up to large polyhedral nanocages and unbounded straight 'train track' assemblies with reconfigurable sizes and geometries that can be readily blueprinted. Because of the complexity of protein structures and sequence-structure relationships, it has not previously been possible to build up large protein assemblies by deliberate placement of protein backbones onto a blank three-dimensional canvas; the simplicity and geometric regularity of our design platform now enables construction of protein nanomaterials according to 'back of an envelope' architectural blueprints.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Proteínas / Nanoestruturas Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Proteínas / Nanoestruturas Idioma: En Ano de publicação: 2024 Tipo de documento: Article