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Synergy of machine learning and density functional theory calculations for predicting experimental Lewis base affinity and Lewis polybase binding atoms.
Huynh, Hieu; Le, Khanh; Vu, Linh; Nguyen, Trang; Holcomb, Matthew; Forli, Stefano; Phan, Hung.
Afiliação
  • Huynh H; Fulbright University Vietnam, Ho Chi Minh City, Vietnam.
  • Le K; Fulbright University Vietnam, Ho Chi Minh City, Vietnam.
  • Vu L; Fulbright University Vietnam, Ho Chi Minh City, Vietnam.
  • Nguyen T; Fulbright University Vietnam, Ho Chi Minh City, Vietnam.
  • Holcomb M; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
  • Forli S; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
  • Phan H; Fulbright University Vietnam, Ho Chi Minh City, Vietnam.
J Comput Chem ; 45(18): 1552-1561, 2024 Jul 05.
Article em En | MEDLINE | ID: mdl-38500409
ABSTRACT
Investigation of Lewis acid-base interactions has been conducted by ab initio calculations and machine learning (ML) models. This study aims to resolve two critical tasks that have not been quantitatively investigated. First, ML models developed from density functional theory (DFT) calculations predict experimental BF3 affinity with Pearson correlation coefficients around 0.9 and mean absolute errors around 10 kJ mol-1. The ML models are trained by DFT-calculated BF3 affinity of more than 3000 adducts, with input features readily obtained by rdkit. Second, the ML models have the capability of predicting the relative strength of Lewis base binding atoms in Lewis polybases, which is either an extremely challenging task to conduct experimentally or a computationally expensive task for ab initio methods. The study demonstrates and solidifies the potential of combining DFT calculations and ML models to predict experimental properties, especially those that are scarce and impractical to empirically acquire.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2024 Tipo de documento: Article