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1.

Chimeric contribution of human extended pluripotent stem cells to monkey embryos ex vivo.

Tan, Tao; Wu, Jun; Si, Chenyang; Dai, Shaoxing; Zhang, Youyue; Sun, Nianqin; Zhang, E; Shao, Honglian; Si, Wei; Yang, Pengpeng; Wang, Hong; Chen, Zhenzhen; Zhu, Ran; Kang, Yu; Hernandez-Benitez, Reyna; Martinez Martinez, Llanos; Nuñez Delicado, Estrella; Berggren, W Travis; Schwarz, May; Ai, Zongyong; Li, Tianqing; Rodriguez Esteban, Concepcion; Ji, Weizhi; Niu, Yuyu; Izpisua Belmonte, Juan Carlos.

Cell ; 184(8): 2020-2032.e14, 2021 04 15.

Article in English | MEDLINE | ID: mdl-33861963

2.

Interspecies Chimerism with Mammalian Pluripotent Stem Cells.

Wu, Jun; Platero-Luengo, Aida; Sakurai, Masahiro; Sugawara, Atsushi; Gil, Maria Antonia; Yamauchi, Takayoshi; Suzuki, Keiichiro; Bogliotti, Yanina Soledad; Cuello, Cristina; Morales Valencia, Mariana; Okumura, Daiji; Luo, Jingping; Vilariño, Marcela; Parrilla, Inmaculada; Soto, Delia Alba; Martinez, Cristina A; Hishida, Tomoaki; Sánchez-Bautista, Sonia; Martinez-Martinez, M Llanos; Wang, Huili; Nohalez, Alicia; Aizawa, Emi; Martinez-Redondo, Paloma; Ocampo, Alejandro; Reddy, Pradeep; Roca, Jordi; Maga, Elizabeth A; Esteban, Concepcion Rodriguez; Berggren, W Travis; Nuñez Delicado, Estrella; Lajara, Jeronimo; Guillen, Isabel; Guillen, Pedro; Campistol, Josep M; Martinez, Emilio A; Ross, Pablo Juan; Izpisua Belmonte, Juan Carlos.

Cell ; 168(3): 473-486.e15, 2017 01 26.

Article in English | MEDLINE | ID: mdl-28129541

3.

Chimeric contribution of human extended pluripotent stem cells to monkey embryos ex vivo.

Tan, Tao; Wu, Jun; Si, Chenyang; Dai, Shaoxing; Zhang, Youyue; Sun, Nianqin; Zhang, E; Shao, Honglian; Si, Wei; Yang, Pengpeng; Wang, Hong; Chen, Zhenzhen; Zhu, Ran; Kang, Yu; Hernandez-Benitez, Reyna; Martinez Martinez, Llanos; Nuñez Delicado, Estrella; Berggren, W Travis; Schwarz, May; Ai, Zongyong; Li, Tianqing; Deng, Hongkui; Esteban, Concepcion Rodriguez; Ji, Weizhi; Niu, Yuyu; Izpisua Belmonte, Juan Carlos.

Cell ; 184(13): 3589, 2021 Jun 24.

Article in English | MEDLINE | ID: mdl-34171321

4.

In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration.

Suzuki, Keiichiro; Tsunekawa, Yuji; Hernandez-Benitez, Reyna; Wu, Jun; Zhu, Jie; Kim, Euiseok J; Hatanaka, Fumiyuki; Yamamoto, Mako; Araoka, Toshikazu; Li, Zhe; Kurita, Masakazu; Hishida, Tomoaki; Li, Mo; Aizawa, Emi; Guo, Shicheng; Chen, Song; Goebl, April; Soligalla, Rupa Devi; Qu, Jing; Jiang, Tingshuai; Fu, Xin; Jafari, Maryam; Esteban, Concepcion Rodriguez; Berggren, W Travis; Lajara, Jeronimo; Nuñez-Delicado, Estrella; Guillen, Pedro; Campistol, Josep M; Matsuzaki, Fumio; Liu, Guang-Hui; Magistretti, Pierre; Zhang, Kun; Callaway, Edward M; Zhang, Kang; Belmonte, Juan Carlos Izpisua.

Nature ; 540(7631): 144-149, 2016 12 01.

Article in English | MEDLINE | ID: mdl-27851729

5.

Increased proteasome activity in human embryonic stem cells is regulated by PSMD11.

Vilchez, David; Boyer, Leah; Morantte, Ianessa; Lutz, Margaret; Merkwirth, Carsten; Joyce, Derek; Spencer, Brian; Page, Lesley; Masliah, Eliezer; Berggren, W Travis; Gage, Fred H; Dillin, Andrew.

Nature ; 489(7415): 304-8, 2012 Sep 13.

Article in English | MEDLINE | ID: mdl-22972301

6.

Human and mouse adipose-derived cells support feeder-independent induction of pluripotent stem cells.

Sugii, Shigeki; Kida, Yasuyuki; Kawamura, Teruhisa; Suzuki, Jotaro; Vassena, Rita; Yin, Yun-Qiang; Lutz, Margaret K; Berggren, W Travis; Izpisúa Belmonte, Juan Carlos; Evans, Ronald M.

Proc Natl Acad Sci U S A ; 107(8): 3558-63, 2010 Feb 23.

Article in English | MEDLINE | ID: mdl-20133714

7.

Brief report: efficient generation of hematopoietic precursors and progenitors from human pluripotent stem cell lines.

Woods, Niels-Bjarne; Parker, Aaron S; Moraghebi, Roksana; Lutz, Margaret K; Firth, Amy L; Brennand, Kristen J; Berggren, W Travis; Raya, Angel; Izpisúa Belmonte, Juan Carlos; Gage, Fred H; Verma, Inder M.

Stem Cells ; 29(7): 1158-64, 2011 Jul.

Article in English | MEDLINE | ID: mdl-21544903

8.

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells.

Phanstiel, Doug; Brumbaugh, Justin; Berggren, W Travis; Conard, Kevin; Feng, Xuezhu; Levenstein, Mark E; McAlister, Graeme C; Thomson, James A; Coon, Joshua J.

Proc Natl Acad Sci U S A ; 105(11): 4093-8, 2008 Mar 18.

Article in English | MEDLINE | ID: mdl-18326628

9.

The San Diego Nathan Shock Center: tackling the heterogeneity of aging.

Shadel, Gerald S; Adams, Peter D; Berggren, W Travis; Diedrich, Jolene K; Diffenderfer, Kenneth E; Gage, Fred H; Hah, Nasun; Hansen, Malene; Hetzer, Martin W; Molina, Anthony J A; Manor, Uri; Marek, Kurt; O'Keefe, David D; Pinto, Antonio F M; Sacco, Alessandra; Sharpee, Tatyana O; Shokriev, Maxim N; Zambetti, Stefania.

Geroscience ; 43(5): 2139-2148, 2021 10.

Article in English | MEDLINE | ID: mdl-34370163

10.

Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation.

Levenstein, Mark E; Berggren, W Travis; Lee, Ji Eun; Conard, Kevin R; Llanas, Rachel A; Wagner, Ryan J; Smith, Lloyd M; Thomson, James A.

Stem Cells ; 26(12): 3099-107, 2008 Dec.

Article in English | MEDLINE | ID: mdl-18802039

11.

Derivation of human embryonic stem cells in defined conditions.

Ludwig, Tenneille E; Levenstein, Mark E; Jones, Jeffrey M; Berggren, W Travis; Mitchen, Erika R; Frane, Jennifer L; Crandall, Leann J; Daigh, Christine A; Conard, Kevin R; Piekarczyk, Marian S; Llanas, Rachel A; Thomson, James A.

Nat Biotechnol ; 24(2): 185-7, 2006 Feb.

Article in English | MEDLINE | ID: mdl-16388305

12.

Aberrant DNA Methylation in Human iPSCs Associates with MYC-Binding Motifs in a Clone-Specific Manner Independent of Genetics.

Panopoulos, Athanasia D; Smith, Erin N; Arias, Angelo D; Shepard, Peter J; Hishida, Yuriko; Modesto, Veronica; Diffenderfer, Kenneth E; Conner, Clay; Biggs, William; Sandoval, Efren; D'Antonio-Chronowska, Agnieszka; Berggren, W Travis; Izpisua Belmonte, Juan Carlos; Frazer, Kelly A.

Cell Stem Cell ; 20(4): 505-517.e6, 2017 04 06.

Article in English | MEDLINE | ID: mdl-28388429

13.

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.

Panopoulos, Athanasia D; D'Antonio, Matteo; Benaglio, Paola; Williams, Roy; Hashem, Sherin I; Schuldt, Bernhard M; DeBoever, Christopher; Arias, Angelo D; Garcia, Melvin; Nelson, Bradley C; Harismendy, Olivier; Jakubosky, David A; Donovan, Margaret K R; Greenwald, William W; Farnam, KathyJean; Cook, Megan; Borja, Victor; Miller, Carl A; Grinstein, Jonathan D; Drees, Frauke; Okubo, Jonathan; Diffenderfer, Kenneth E; Hishida, Yuriko; Modesto, Veronica; Dargitz, Carl T; Feiring, Rachel; Zhao, Chang; Aguirre, Aitor; McGarry, Thomas J; Matsui, Hiroko; Li, He; Reyna, Joaquin; Rao, Fangwen; O'Connor, Daniel T; Yeo, Gene W; Evans, Sylvia M; Chi, Neil C; Jepsen, Kristen; Nariai, Naoki; Müller, Franz-Josef; Goldstein, Lawrence S B; Izpisua Belmonte, Juan Carlos; Adler, Eric; Loring, Jeanne F; Berggren, W Travis; D'Antonio-Chronowska, Agnieszka; Smith, Erin N; Frazer, Kelly A.

Stem Cell Reports ; 8(4): 1086-1100, 2017 04 11.

Article in English | MEDLINE | ID: mdl-28410642

14.

The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming.

Panopoulos, Athanasia D; Yanes, Oscar; Ruiz, Sergio; Kida, Yasuyuki S; Diep, Dinh; Tautenhahn, Ralf; Herrerías, Aída; Batchelder, Erika M; Plongthongkum, Nongluk; Lutz, Margaret; Berggren, W Travis; Zhang, Kun; Evans, Ronald M; Siuzdak, Gary; Izpisua Belmonte, Juan Carlos.

Cell Res ; 22(1): 168-77, 2012 Jan.

Article in English | MEDLINE | ID: mdl-22064701

15.

Feeder-dependent and feeder-independent iPS cell derivation from human and mouse adipose stem cells.

Sugii, Shigeki; Kida, Yasuyuki; Berggren, W Travis; Evans, Ronald M.

Nat Protoc ; 6(3): 346-58, 2011 Mar.

Article in English | MEDLINE | ID: mdl-21372815

16.

A high proliferation rate is required for cell reprogramming and maintenance of human embryonic stem cell identity.

Ruiz, Sergio; Panopoulos, Athanasia D; Herrerías, Aída; Bissig, Karl-Dimiter; Lutz, Margaret; Berggren, W Travis; Verma, Inder M; Izpisua Belmonte, Juan Carlos.

Curr Biol ; 21(1): 45-52, 2011 Jan 11.

Article in English | MEDLINE | ID: mdl-21167714

17.

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

McAlister, Graeme C; Berggren, W Travis; Griep-Raming, Jens; Horning, Stevan; Makarov, Alexander; Phanstiel, Doug; Stafford, George; Swaney, Danielle L; Syka, John E P; Zabrouskov, Vlad; Coon, Joshua J.

J Proteome Res ; 7(8): 3127-36, 2008 Aug.

Article in English | MEDLINE | ID: mdl-18613715

18.

Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

McAlister, Graeme C; Phanstiel, Doug; Good, David M; Berggren, W Travis; Coon, Joshua J.

Anal Chem ; 79(10): 3525-34, 2007 May 15.

Article in English | MEDLINE | ID: mdl-17441688

19.

Single-pulse nanoelectrospray ionization.

Berggren, W Travis; Westphall, Michael S; Smith, Lloyd M.

Anal Chem ; 74(14): 3443-8, 2002 Jul 15.

Article in English | MEDLINE | ID: mdl-12139052

20.

Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection.

Berggren, W Travis; Takova, Tsetska; Olson, Marilyn C; Eis, Peggy S; Kwiatkowski, Robert W; Smith, Lloyd M.

Anal Chem ; 74(8): 1745-50, 2002 Apr 15.

Article in English | MEDLINE | ID: mdl-11985304

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Chimeric contribution of human extended pluripotent stem cells to monkey embryos ex vivo.

Interspecies Chimerism with Mammalian Pluripotent Stem Cells.

Chimeric contribution of human extended pluripotent stem cells to monkey embryos ex vivo.

In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration.

Increased proteasome activity in human embryonic stem cells is regulated by PSMD11.

Human and mouse adipose-derived cells support feeder-independent induction of pluripotent stem cells.

Brief report: efficient generation of hematopoietic precursors and progenitors from human pluripotent stem cell lines.

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells.

The San Diego Nathan Shock Center: tackling the heterogeneity of aging.

Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation.

Derivation of human embryonic stem cells in defined conditions.

Aberrant DNA Methylation in Human iPSCs Associates with MYC-Binding Motifs in a Clone-Specific Manner Independent of Genetics.

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.

The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming.

Feeder-dependent and feeder-independent iPS cell derivation from human and mouse adipose stem cells.

A high proliferation rate is required for cell reprogramming and maintenance of human embryonic stem cell identity.

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

Single-pulse nanoelectrospray ionization.

Multiplexed gene expression analysis using the invader RNA assay with MALDI-TOF mass spectrometry detection.