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1.
Animal ; 15(4): 100177, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33610516

ABSTRACT

Somatic cell count (SCC) can be used as a proxy for the prevalence of mastitis in a herd, reflecting the hygiene conditions and management practices on dairy farms, and thus an indicator of milk quality. In this study, we investigated how the adoption of management practices in milking systems can contribute to the reduction of SCC levels and improve milk quality. We collected data regarding management practices from 91 dairy farms in three municipalities of southeastern Pará: Parauapebas, Curionópolis, and Eldorado dos Carajás. Fifty milliliters of milk from each farm were collected in bottles containing bronopol, to preserve SCC. An exploratory factorial analysis (EFA) was performed to reduce the number of variables (management techniques) on dairy farms to some latent factors. We then used the selected factors to estimate the bovine mastitis management index to classify farms according to their use of technology and management techniques. Our results showed that most of the farmers (65.9%) used management techniques inefficiently in their systems, resulting in a significant loss of product quality, while only 3.3% had adopted the full set of techniques. The EFA results demonstrated that simple management practices including regular cleaning of the milking lines, a strip cup test, the California mastitis test, and washing teats with water before milking could be adopted to improve milk quality. However, in scenarios where the regulations become more rigorous, most farmers are unable to meet the maximum allowable SCC requirements, necessitating management innovations to reduce SCC. Therefore, the dissemination of knowledge, technical assistance, and access to new technologies is essential for improving management practices, and thus milk quality.


Subject(s)
Cattle Diseases , Mastitis, Bovine , Animals , Cattle , Cell Count/veterinary , Dairying , Female , Mammary Glands, Animal , Mastitis, Bovine/prevention & control , Milk
2.
Mol Cell Biol ; 5(6): 1268-78, 1985 Jun.
Article in English | MEDLINE | ID: mdl-4033652

ABSTRACT

The genes coding for hsp 16-48, previously identified by cDNA cloning, and for another 16-kilodalton heat shock protein designated hsp16-1 were characterized by DNA sequencing. The two genes were arranged in a head-to-head orientation. Both the coding and flanking regions were located within a 1.9-kilobase module which was duplicated exactly to form a 3.8-kilobase inverted repeat structure. The inverted repeat structure ended in an unusual guanine-plus-cytosine-rich sequence 24 nucleotides in length. The identity of the two modules at the nucleotide sequence level implies that the duplication event may have occurred recently. Alternatively, gene conversion between the two modules could also maintain homology of the two gene pairs. The small heat shock genes of Caenorhabditis elegans contained TATA boxes and heat-inducible promoters, the latter agreeing closely with the Drosophila melanogaster consensus sequence described by Pelham (Cell 30:517-528, 1982). Unlike the homologous D. melanogaster genes, each of these C. elegans genes contained a short intron, the position of which has been conserved in a related murine alpha-crystallin gene. The intron separated variable and conserved regions within the amino acid sequences of the encoded heat shock polypeptides.


Subject(s)
Caenorhabditis/genetics , Heat-Shock Proteins/genetics , Animals , Base Sequence , Chromosome Mapping , Cloning, Molecular , Gene Conversion , Gene Expression Regulation , Promoter Regions, Genetic , Repetitive Sequences, Nucleic Acid , Transcription, Genetic
3.
Mol Cell Biol ; 9(1): 268-77, 1989 Jan.
Article in English | MEDLINE | ID: mdl-2538720

ABSTRACT

Ubiquitin is a multifunctional 76-amino-acid protein which plays critical roles in many aspects of cellular metabolism. In Caenorhabditis elegans, the major source of ubiquitin RNA is the polyubiquitin locus, UbiA. UbiA is transcribed as a polycistronic mRNA which contains 11 tandem repeats of ubiquitin sequence and possesses a 2-amino-acid carboxy-terminal extension on the final repeat. The UbiA locus possesses several unusual features not seen in the ubiquitin genes of other organisms studied to date. Mature UbiA mRNA acquires a 22-nucleotide leader sequence via a trans-splicing reaction involving a 100-nucleotide splice leader RNA derived from a different chromosome. UbiA is also unique among known polyubiquitin genes in containing four cis-spliced introns within its coding sequence. Thus, UbiA is one of a small class of genes found in higher eucaryotes whose heterogeneous nuclear RNA undergoes both cis and trans splicing. The putative promoter region of UbiA contains a number of potential regulatory elements: (i) a cytosine-rich block, (ii) two sequences resembling the heat shock regulatory element, and (iii) a palindromic sequence with homology to the DNA-binding site of the mammalian steroid hormone receptor. The expression of the UbiA gene has been studied under various heat shock conditions and has been monitored during larval moulting and throughout the major stages of development. These studies indicate that the expression of the UbiA gene is not inducible by acute or chronic heat shock and does not appear to be under nutritional or developmental regulation in C. elegans.


Subject(s)
Base Sequence , Caenorhabditis/genetics , Gene Expression Regulation , Repetitive Sequences, Nucleic Acid , Ubiquitins/genetics , Animals , Clone Cells , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Electronic Data Processing , Immunoblotting , Molecular Sequence Data , Promoter Regions, Genetic , RNA, Messenger/analysis
4.
Mol Cell Biol ; 4(9): 1785-91, 1984 Sep.
Article in English | MEDLINE | ID: mdl-6092938

ABSTRACT

RTG-2 cells, a line of fibroblasts from rainbow trout (Salmo gairdnerii), are induced to synthesize a distinct set of heat-shock polypeptides after exposure to elevated temperature or to low concentrations of sodium arsenite. We isolated and characterized two cDNA sequences, THS70.7 and THS70.14, encoding partial information for two distinct species of 70-kilodalton heat shock polypeptide (hsp70) from these cells. These sequences are identical at 73.3% of the nucleotide positions in their regions of overlap, and their degree of sequence conservation at the polypeptide level is 88.1%. The two derived trout hsp70 polypeptide sequences show extensive homology with derived amino acid sequences for hsp70 polypeptides from Drosophila melanogaster and Saccharomyces cerevisiae. Northern blot analysis of RNA from arsenite-induced RTG-2 cells, with the trout hsp70 cDNAs as probes, revealed the presence of three hsp70 mRNA species. Southern blot analysis of trout testis DNA cleaved with various restriction endonucleases revealed a small number of bands hybridizing to the hsp70 cDNAs, suggesting the existence of a small family of hsp70 genes in this species. Finally, trout hsp70 cDNA sequences cross-hybridized with restriction fragments in genomic DNA from HeLa cells, bovine liver, Caenorhabditis elegans, and D. melanogaster.


Subject(s)
DNA/analysis , Heat-Shock Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Cell Line , DNA Restriction Enzymes , Drosophila melanogaster/genetics , Fibroblasts/metabolism , Molecular Weight , Nucleic Acid Hybridization , Saccharomyces cerevisiae/genetics , Species Specificity , Trout
5.
Mol Cell Biol ; 6(9): 3134-43, 1986 Sep.
Article in English | MEDLINE | ID: mdl-3023964

ABSTRACT

A divergently transcribed pair of Caenorhabditis elegans hsp16 genes was introduced into mouse fibroblasts by stable transfection with vectors containing bovine papillomavirus plasmid maintenance sequences and a selectable gene. The hsp16 genes were transcriptionally inactive in the mouse cells under normal growth conditions and were strongly induced by heat shock or arsenite. In a cell line with 12 copies of the gene pair, there were estimated to be more than 10,000 hsp16 transcripts in each cell after 2 h of heat shock treatment. The hsp16 transcript levels were more than 100 times higher than those of a gene with a herpes simplex virus thymidine kinase gene promoter carried on the same vector. A single heat shock promoter element (HSE) could activate bidirectional transcription of the two hsp16 genes when placed between the two TATA elements, but the transcriptional efficiency was reduced 10-fold relative to that of the wild-type gene pair. Four overlapping HSEs positioned between the two TATA elements resulted in inducible bidirectional transcription at greater than wild-type levels. The number of HSEs can therefore be a major determinant of the promoter strength of heat-inducible genes in mammalian cells. Partial disruption of an alternating purine-pyrimidine sequence between the two hsp16 genes had no significant effect on their transcriptional activity.


Subject(s)
Caenorhabditis/genetics , Genes , Heat-Shock Proteins/genetics , Promoter Regions, Genetic , Transcription, Genetic , Animals , Base Sequence , DNA Restriction Enzymes , Fibroblasts/metabolism , Genetic Vectors , Mice , Mutation
6.
Mol Cell Biol ; 13(3): 1371-7, 1993 Mar.
Article in English | MEDLINE | ID: mdl-8441382

ABSTRACT

The ubiquitin-protein conjugation system is involved in a variety of eukaryotic cell functions, including the degradation of abnormal and short-lived proteins, chromatin structure, cell cycle progression, and DNA repair. The ubiquitination of target proteins is catalyzed by a ubiquitin-activating enzyme (E1) and ubiquitin-conjugating enzymes (E2s) and in some cases also requires auxiliary substrate recognition proteins (E3s). Multiple E2s have been found, and these likely possess specificity for different classes of target proteins. Here we report the cloning and characterization of a gene (ubc-2) encoding a ubiquitin-conjugating enzyme which is involved in the selective degradation of abnormal and short-lived proteins in the nematode Caenorhabditis elegans. The nematode ubc-2 gene encodes a 16.7-kDa protein with striking amino acid sequence similarity to Saccharomyces cerevisiae UBC4 and UBC5 and Drosophila UbcD1. When driven by the UBC4 promoter, ubc-2 can functionally substitute for UBC4 in yeast cells; it rescues the slow-growth phenotype of ubc4 ubc5 mutants at normal temperature and restores their ability to grow at elevated temperatures. Western blots (immunoblots) of ubc4 ubc5 yeast cells transformed with ubc-2 reveal a protein of the expected size, which cross-reacts with anti-Drosophila UbcD1 antibody. C. elegans ubc-2 is constitutively expressed at all life cycle stages and, unlike yeast UBC4 and UBC5, is not induced by heat shock. Both trans and cis splicing are involved in the maturation of the ubc-2 transcript. These data suggest that yeast UBC4 and UBC5, Drosophila UbcD1, and C. elegans ubc-2 define a highly conserved gene family which plays fundamental roles in all eukaryotic cells.


Subject(s)
Caenorhabditis elegans Proteins , Caenorhabditis elegans/genetics , Genes, Helminth/genetics , Helminth Proteins/metabolism , Ligases/genetics , Saccharomyces cerevisiae Proteins , Amino Acid Sequence , Animals , Base Sequence , Caenorhabditis elegans/enzymology , Caenorhabditis elegans/growth & development , Cloning, Molecular , Drosophila/genetics , Genetic Complementation Test , Hot Temperature , Ligases/metabolism , Molecular Sequence Data , Morphogenesis , RNA Precursors/metabolism , RNA Splicing , Saccharomyces cerevisiae/genetics , Sequence Homology, Amino Acid , Ubiquitin-Conjugating Enzymes
7.
Mol Biol Cell ; 3(2): 221-33, 1992 Feb.
Article in English | MEDLINE | ID: mdl-1550963

ABSTRACT

The expression of the hsp16 gene family in Caenorhabditis elegans has been examined by introducing hsp16-lacZ fusions into the nematode by transformation. Transcription of the hsp16-lacZ transgenes was totally heat-shock dependent and resulted in the rapid synthesis of detectable levels of beta-galactosidase. Although the two hsp16 gene pairs of C. elegans are highly similar within both their coding and noncoding sequences, quantitative and qualitative differences in the spatial pattern of expression between gene pairs were observed. The hsp16-48 promoter was shown to direct greater expression of beta-galactosidase in muscle and hypodermis, whereas the hsp16-41 promoter was more efficient in intestine and pharyngeal tissue. Transgenes that eliminated one promoter from a gene pair were expressed at reduced levels, particularly in postembryonic stages, suggesting that the heat shock elements in the intergenic region of an hsp16 gene pair may act cooperatively to achieve high levels of expression of both genes. Although the hsp16 gene pairs are never constitutively expressed, their heat inducibility is developmentally restricted; they are not heat inducible during gametogenesis or early embryogenesis. The hsp16 genes represent the first fully inducible system in C. elegans to be characterized in detail at the molecular level, and the promoters of these genes should find wide applicability in studies of tissue- and developmentally regulated genes in this experimental organism.


Subject(s)
Heat-Shock Proteins/biosynthesis , Transfection/genetics , Animals , Caenorhabditis/genetics , Cloning, Molecular , Heat-Shock Proteins/genetics , Promoter Regions, Genetic/genetics , Temperature , beta-Galactosidase/biosynthesis
8.
Genetics ; 91(2): 275-93, 1979 Feb.
Article in English | MEDLINE | ID: mdl-109351

ABSTRACT

The present report summarizes our recent progress in the genetic dissection of an elementary genetic unit in a higher organism, the rosy locus (ry:3--52.0) in Drosophila melanogaster. Pursuing the hypothesis that the rosy locus includes a noncoding control region, as well as a structural element coding for the xanthine dehydrogenase (XDH) peptide, experiments are described that characterize and map a rosy locus variant associated with much lower than normal levels of XDH activity. Experiments are described that fail to relate this phenotype to alteration in the structure of the XDH peptide, but clearly associate this character with variation in number of molecules of XDH per fly. Large-scale fine-structure recombination experiments locate the genetic basis for this variation in the number of molecules of XDH per fly to a site immediately to the left of the XDH structural element within a region previously designated as the XDH control element. Moreover, experiments clearly separate this "underproducer" variant site from a previously described "overproducer" site within the control region. Examination of enzyme activity in electrophoretic gels of appropriate heterozygous genotypes demonstrates the cis-acting nature of this variation in the number of molecules of XDH. A revision of the map of the rosy locus, structural and control elements is presented in the light of the additional mapping data now available.


Subject(s)
Drosophila melanogaster/genetics , Genes , Ketone Oxidoreductases/genetics , Operon , Xanthine Dehydrogenase/genetics , Crosses, Genetic , Electrophoresis , Genetic Variation , Genotype , Phenotype
9.
Trends Biotechnol ; 14(4): 125-9, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8936433

ABSTRACT

Toxicity bioassays rely largely on lethality measurements. Such assays are generally lengthy and expensive, and provide little information on mechanisms of toxicity. A desire to understand the mechanisms by which cells respond to physical and chemical stresses has led to interest in measuring stress proteins as toxicological endpoints. Transgenic strains of the nematode Caenorhabditis elegans that carry a reporter enzyme under control of a stress-inducible promoter have been created. The reporter is easily quantified in intact nematodes, and it responds to a wide range of chemical stressors. Therefore, transgenic C. elegans can provide the basis for a wide range of quick, simple and informative bioassays.


Subject(s)
Biosensing Techniques , Caenorhabditis elegans/genetics , Animals , Animals, Genetically Modified , Biological Assay/methods , Biotechnology/trends , Caenorhabditis elegans/drug effects , Caenorhabditis elegans/enzymology , Genes, Reporter , Heat-Shock Proteins/genetics , Lac Operon , Metals/toxicity , Soil Pollutants/toxicity , Water Pollutants, Chemical/toxicity , beta-Galactosidase/genetics , beta-Galactosidase/metabolism
10.
Gene ; 156(2): 241-6, 1995 Apr 24.
Article in English | MEDLINE | ID: mdl-7758963

ABSTRACT

A Caenorhabditis elegans (Ce) homologue to the eukaryotic tcp-1 gene (encoding t-complex polypeptide-1) has been mapped, isolated and sequenced. Ce tcp-1 is a single-copy gene located on chromosome II. Nucleotide sequence analysis of the gene reveals the presence of four introns in the coding region and repetitive elements upstream from the start codon. The predicted Ce TCP-1 protein displays more than 60% amino-acid sequence identity to other eukaryotic TCP-1, suggesting a common origin and function for these proteins. The primary tcp-1 transcript undergoes trans-splicing to the spliced leader SL1 RNA, in addition to cis-splicing, to yield a single mRNA species of 1.9 kb. Northern blot analysis shows that unlike the evolutionarily related Hsp60 chaperonin genes, tcp-1 is not upregulated at elevated temperatures, but instead appears to be down-regulated. Additionally, the overall level of the tcp-1 transcript is approximately constant throughout the development of the nematode. The Ce chaperonin-containing TCP-1 (CCT) was identified. A protein extract made from Ce embryos was subjected to sucrose gradient fractionation and ATP-agarose chromatography. Western blot analysis of the purified protein fractions, using anti-mouse TCP-1 monoclonal antibody and antibodies raised against Ce TCP-1, reveals that Ce TCP-1 is a 57-kDa protein subunit of a high-molecular-mass complex capable of binding ATP.


Subject(s)
Caenorhabditis elegans/genetics , Chaperonins , Genes, Helminth/genetics , Molecular Chaperones/genetics , Amino Acid Sequence , Animals , Base Sequence , Caenorhabditis elegans/growth & development , Chaperonin Containing TCP-1 , Chromosome Mapping , Cloning, Molecular , Gene Expression Regulation , Hot Temperature , Molecular Sequence Data , Multigene Family/genetics , RNA Splicing , Sequence Analysis, DNA
11.
Gene ; 113(2): 165-73, 1992 Apr 15.
Article in English | MEDLINE | ID: mdl-1315299

ABSTRACT

The expression of the polyubiquitin-encoding gene (ubq-1) of Caenorhabditis elegans was analysed using transgenic nematode lines carrying translational ubq-1::lacZ fusions. Animals carrying a construct consisting of 938 bp of ubq-1 upstream sequences fused to lacZ (ubq938::lacZ) expressed beta Gal in embryos and in a tissue-general manner in 20% of L1 larvae. Somatic expression in later stages was usually confined to body muscle. Progressively larger deletions extending from the 5' end of ubq938::lacZ did not significantly alter the pattern of expression until 827 bp of sequence had been removed. Thus, sequences upstream from the transcription start point, including a G+C-rich block and a sequence resembling a TATA box (GAATAA), are not required to generate the expression pattern seen with ubq938::lacZ. Moreover, a basal level of expression was maintained in embryos when 903 bp were deleted. These results suggest that the promoter elements required for efficient expression of ubq-1 may reside within the transcribed region of the gene; alternatively, they must lie more than 1.7 kb upstream or 0.8 kb downstream from this region. Polymerase chain reaction analysis indicates that RNA molecules transcribed from the ubq938::lacZ and ubq delta 827::lacZ transgenes are trans-spliced to SL1, as is ubq-1 RNA.


Subject(s)
Animals, Genetically Modified , Caenorhabditis/genetics , Ubiquitins/genetics , Animals , Base Sequence , Caenorhabditis/enzymology , Embryo, Nonmammalian/enzymology , Gene Expression , Hot Temperature , Molecular Sequence Data , Polymerase Chain Reaction , Polymers/metabolism , Polyubiquitin , RNA Splicing , TATA Box , Transcription, Genetic , beta-Galactosidase/metabolism
12.
FEBS Lett ; 280(2): 375-8, 1991 Mar 25.
Article in English | MEDLINE | ID: mdl-2013341

ABSTRACT

Peptides corresponding to selected regions of the 16 kDa small heat shock proteins (hsps) of the nematode C. elegans were synthesized and used to elicit polyclonal antibodies. It was found that these antibodies reacted predominantly with either the 16 kDa or the 18 kDa proteins, suggesting a close structural similarity between these hsps. Western blots of two-dimensional gels revealed extensive heterogeneity in these proteins, probably resulting from post-synthetic modifications. The native structures of both size classes of hsps were found to consist of large complexes of 4-5 x 10(5) Da.


Subject(s)
Caenorhabditis/analysis , Heat-Shock Proteins/analysis , Amino Acid Sequence , Animals , Antibodies, Helminth/immunology , Blotting, Western , Caenorhabditis/immunology , Chromatography, Gel , Electrophoresis, Gel, Two-Dimensional , Heat-Shock Proteins/immunology , Isomerism , Molecular Sequence Data , Molecular Weight
13.
FEBS Lett ; 433(3): 228-32, 1998 Aug 21.
Article in English | MEDLINE | ID: mdl-9744800

ABSTRACT

Four 12.2-12.6 kDa small heat-shock proteins (sHSPs) of Caenorhabditis elegans are the smallest known members of the sHSP family. They essentially comprise the characteristic C-terminal 'alpha-crystallin domain' of the sHSPs, having a very short N-terminal region, and lacking a C-terminal tail. Recombinant Hsp12.2 and 12.3 are characterized here. Far-UV CD spectra reveal, as for other sHSPs, predominantly a beta-sheet structure. By gel permeation and crosslinking, they are the first sHSPs shown to occur as tetramers, rather than forming the usual large multimeric complexes. Exceptionally, too, both appear devoid of in vitro chaperone-like abilities. This supports the notion that tetramers are the building blocks of sHSP complexes, and that higher multimer formation, mediated through the N-terminal domains, is a prerequisite for chaperone-like activity.


Subject(s)
Heat-Shock Proteins/chemistry , Animals , Caenorhabditis elegans/genetics , Caenorhabditis elegans/metabolism , Chromatography, Gel , Circular Dichroism , Cloning, Molecular , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Hot Temperature , Kinetics , Macromolecular Substances , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Thermodynamics
14.
DNA Cell Biol ; 11(1): 71-82, 1992.
Article in English | MEDLINE | ID: mdl-1739435

ABSTRACT

A gene (eft-1) encoding an elongation factor 2-like protein was isolated from a region adjacent to the polyubiquitin gene, ubq-1, of Caenorhabditis elegans. Sequence analysis of genomic and cDNA clones revealed that the deduced amino acid sequence of the protein (EFT-1) is 38% identical to that of mammalian and Drosophila elongation factor 2 (EF-2). The entire eft-1 gene is approximately 3.8 kb in length and contains 5 exons separated by short introns of 46-75 bp. The 2,547-bp open reading frame predicts a protein of 849 amino acid residues (calculated Mr, 96,151). Conserved sequences shared among a variety of GTP-binding proteins including EF-2 are found in the amino-terminal third of EFT-1. The carboxy-terminal half contains regions with 40-57% similarity (including conservative changes) with segments characteristic of EF-2 and its prokaryotic homolog, EF-G. However, the histidyl residue target for ADP-ribosylation of EF-2 by diphtheria toxin is replaced by tyrosine in EFT-1. Southern and Northern blot analyses indicate that eft-1 is a single-copy gene that is expressed at all stages of nematode development. Amplification of fragments encoding highly conserved regions of EF-2 using the polymerase chain reaction led to the isolation of a fragment encoding the modifiable histidyl residue and which likely represents part of the C. elegans EF-2 gene (eft-2). This suggests that EFT-1 is not the C. elegans homolog of EF-2, but a closely related protein.


Subject(s)
Caenorhabditis/genetics , Chromosomes , Genes , Peptide Elongation Factors/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Northern , Blotting, Southern , Caenorhabditis/chemistry , Cloning, Molecular , Cricetinae , DNA/isolation & purification , Molecular Sequence Data , Peptide Elongation Factor 2 , Peptide Elongation Factors/chemistry , Peptide Elongation Factors/isolation & purification , Sequence Homology, Nucleic Acid
15.
DNA Cell Biol ; 10(8): 603-11, 1991 Oct.
Article in English | MEDLINE | ID: mdl-1930695

ABSTRACT

A Caenorhabditis elegans lambda ZAP cDNA library was screened using a fragment amplified from highly conserved regions of the mammalian and Drosophila elongation factor 2 (EF-2). Two types of cDNA clones were obtained, corresponding to two mRNA species with 3'-untranslated regions of 60 and 115 nucleotides, both encoding identical polypeptides. Sequence analysis of these clones and comparisons with hamster and Drosophila EF-2 sequences suggests that they encode C. elegans EF-2. Clone pCef6A, encoding the entire C. elegans EF-2 mRNA sequence including 45 nucleotides of 5'-untranslated region, contains a 2,556-bp open reading frame which predicts a polypeptide of 852 amino acid residues (Mr 94,564). The deduced amino acid sequence is greater than 80% identical to that of mammalian and Drosophila EF-2. Conserved sequence segments shared among a variety of GTP-binding proteins are found in the amino-terminal region. The carboxy-terminal half contains segments unique to EF-2 and its prokaryotic homolog, EF-G, as well as the histidyl residue which is ADP-ribosylated by diphtheria toxin. The C. elegans protein contains a 12-amino-acid insertion between positions 90 and 100, and a 13-amino-acid deletion between positions 237 and 260, relative to hamster EF-2. Partial sequencing of a genomic clone encoding the entire C. elegans EF-2 gene (named eft-2) has so far revealed two introns of 48 and 44 bp following codons Gln-191 and Gln-250, respectively. Southern and Northern blot analyses indicate that eft-2 is a single-copy gene and encodes a 3-kb mRNA species which is present throughout nematode development.


Subject(s)
Caenorhabditis/genetics , Peptide Elongation Factors/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Northern , Blotting, Southern , Cloning, Molecular , DNA/genetics , Molecular Sequence Data , Peptide Elongation Factor 2 , Polymerase Chain Reaction , Protein Biosynthesis , RNA, Messenger/genetics , Restriction Mapping , Sequence Alignment , Sequence Homology, Nucleic Acid
16.
DNA Cell Biol ; 14(11): 951-60, 1995 Nov.
Article in English | MEDLINE | ID: mdl-7576182

ABSTRACT

In this report we present the sequences of four new cct chaperonin genes from the nematode Caenorhabditis elegans. The four genes, cct-2, cct-4, cct-5, and cct-6 are orthologs of the mouse chaperonin genes Cctb, Cctd, Ccte, and Cctz, sharing 66%, 63%, 68%, and 67% deduced amino acid sequence identity, respectively. The C. elegans multigene family includes these four genes as well as cct-1 (tcp-1), and displays 23-35% pairwise predicted amino acid sequence identity between members, and 31-35% identity to the closely related archaebacterial chaperonin TF55. The five C. elegans cct genes are expressed in all life stages (egg, four larval stages, and adult). Members of the multigene family occur as a loosely associated group of three genes on chromosome II, and two widely separated genes on chromosome III. The predicted secondary structures of all five C. elegans CCT deduced protein sequences are nearly identical. Moreover, all chaperonins examined had comparable predicted secondary structures. Algorithmic predictions of the secondary structures of GroEL, Hsp60, and Rubisco subunit-binding protein (RuBP) are almost identical, and are very similar to the known GroEL secondary structure. The CCT/TF55 family predicted secondary structures are essentially identical to each other and are also related to GroEL, Hsp60, and RuBP. The most notable difference between the CCT/TF55 and the GroEL/Hsp60/RuBP families is in the presumed polypeptide binding domain.


Subject(s)
Caenorhabditis elegans/genetics , Chaperonins/genetics , Genes, Helminth/genetics , Helminth Proteins/genetics , Molecular Chaperones/genetics , Amino Acid Sequence , Animals , Chaperonin Containing TCP-1 , Chaperonins/chemistry , Chromosome Mapping , Gene Expression Regulation, Developmental , Helminth Proteins/chemistry , Mice , Molecular Sequence Data , Multigene Family/genetics , Protein Structure, Secondary , RNA, Helminth/biosynthesis , RNA, Messenger/biosynthesis , Sequence Alignment , Sequence Homology, Amino Acid
17.
DNA Cell Biol ; 9(3): 177-91, 1990 Apr.
Article in English | MEDLINE | ID: mdl-2160246

ABSTRACT

The 16-kD heat shock genes of Caenorhabditis elegans are encoded by four highly similar genes, arranged as divergently transcribed pairs. In spite of the high level of identity that exists between the HSP16 genes, after 2 hr of heat shock the mRNA from one locus accumulates at 7-14 times the level of that from the other locus. To determine if differential HSP16 gene transcriptional activity contributes to these differences, we examined the chromatin structure of the HSP16 genes in nonshocked embryos and in embryos undergoing both the initial phases of heat shock and after 2 hr of heat shock. To carry out these studies, we developed a nuclei isolation procedure that has allowed us to prepare large amounts of nuclei from C. elegans embryos, larvae, and adults that are essentially free of endogenous nuclease and protease activities and appear to be an excellent substrate for investigating chromatin structure in C. elegans. This procedure has enabled us to report the first observations of C. elegans basic chromatin structure, as well as characterize HSP16 chromatin structure in detail. The data suggest that differential HSP16 RNA accumulation following 2 hr of heat shock appears to be correlated with a change in the chromatin structure of one of the HSP16 loci to a preinduction, transcriptionally inactive configuration.


Subject(s)
Caenorhabditis/genetics , Chromatin/ultrastructure , Heat-Shock Proteins/genetics , Animals , Base Sequence , Cell Nucleus/analysis , Deoxyribonuclease I , Hot Temperature , Micrococcal Nuclease , Neurospora crassa/enzymology , Nucleosomes/analysis , Nucleotidases , Restriction Mapping , Single-Strand Specific DNA and RNA Endonucleases
18.
DNA Cell Biol ; 14(10): 883-91, 1995 Oct.
Article in English | MEDLINE | ID: mdl-7546294

ABSTRACT

The RAD6/UBC2 gene from Saccharomyces cerevisiae encodes a ubiquitin-conjugating enzyme involved in DNA repair, induced mutagenesis, and sporulation. Here we report the isolation and characterization of the Caenorhabditis elegans RAD6 homolog designated ubc-1. Ubc-1 encodes a 21.5-kD protein that shares considerable identity with RAD6 (66%) as well as with other RAD6 homologs, including Schizosaccharomyces pombe rhp6+ (70%), Drosophila melanogaster Dhr6 (83%), and the two human homologs HHR6A and HHR6B (84% and 83%, respectively). However, UBC-1 is distinct in being the only known RAD6 homolog, other than RAD6 itself, with a carboxy-terminal extension. Analysis of UBC-1 homologs from C. briggsae and Ascaris suum show that the presence of the carboxy-terminal extension is conserved in nematodes. When constitutively expressed from the yeast promoter ADH1, ubc-1 complements the DNA repair functions in a S. cerevisiae rad6 delta mutant. Surprisingly, ubc-1 fails to complement the sporulation function of RAD6, despite its possession of an acidic carboxy-terminal tail. C. elegans UBC-1 is capable of forming a thiol-ester bond with ubiquitin, but, unlike RAD6, is unable to transfer ubiquitin to histone H2B in vitro. Both cis and trans splicing are involved in the maturation of the ubc-1 transcript. The presence of the SL2 trans-splice leader in the ubc-1 transcript suggests that ubc-1 may be co-transcribed as part of a polycistronic message.


Subject(s)
Caenorhabditis elegans Proteins , Caenorhabditis elegans/metabolism , Genes, Helminth , Helminth Proteins/chemistry , Ligases/chemistry , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/enzymology , Amino Acid Sequence , Animals , Ascaris/chemistry , Base Sequence , Caenorhabditis elegans/genetics , Drosophila melanogaster/chemistry , Evolution, Molecular , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/physiology , Genes, Fungal , Genetic Complementation Test , Helminth Proteins/genetics , Helminth Proteins/physiology , Humans , Ligases/genetics , Ligases/physiology , Molecular Sequence Data , RNA Splicing , Saccharomyces cerevisiae/genetics , Schizosaccharomyces/chemistry , Sequence Alignment , Sequence Homology, Amino Acid , Species Specificity , Ubiquitin-Conjugating Enzymes , Ubiquitins/metabolism
19.
J Gerontol A Biol Sci Med Sci ; 56(7): B281-7, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11445592

ABSTRACT

We present evidence for elevated levels of heat shock protein 16 (HSP16) in an intrinsically thermotolerant, long-lived strain of Caenorhabditis elegans during and after heat stress. Mutation of the age-1 gene, encoding a phosphatidylinositol 3-kinase catalytic subunit, results in both extended life span (Age) and increased intrinsic thermotolerance (Itt) in adult hermaphrodites. We subjected age-synchronous cohorts of worms to lethal and nonlethal thermal stress and observed the accumulation of a small (16-18 kd) heat-shock-specific polypeptide detected by an antibody raised against C. elegans HSP16. Strains carrying the mutation hx546 consistently accumulated HSP16 to higher levels than a wild-type strain. Significantly, overaccumulation of HSP16 in the age-1(hx546) strain following heat was observed throughout the adult life span. A chimeric transgene containing the Escherichia coli beta-galactosidase gene fused to a C. elegans HSP16-41 transcriptional promoter was introduced into wild-type and age-1(hx546) backgrounds. Heat-inducible expression of the transgene was elevated in the age-1(hx546) strain compared with the wild-type strain under a wide variety of heat shock and recovery conditions. These observations are consistent with a model in which Age mutations exhibit thermotolerance and extended life span as a result of elevated levels of molecular chaperones.


Subject(s)
Aging/genetics , Bacterial Proteins , Caenorhabditis elegans Proteins , Caenorhabditis elegans/metabolism , Heat-Shock Proteins/metabolism , Hot Temperature , Mutation , Animals , Caenorhabditis elegans/enzymology , Caenorhabditis elegans/genetics , Escherichia coli/enzymology , Gene Transfer Techniques , Genes, Reporter/genetics , Heat-Shock Proteins/genetics , Longevity , Molecular Chaperones/metabolism , Phosphatidylinositol 3-Kinases/genetics , Promoter Regions, Genetic/genetics , Recombinant Fusion Proteins , Time Factors , Transcription, Genetic , Transgenes/genetics , Up-Regulation , beta-Galactosidase/genetics
20.
Toxicology ; 109(2-3): 119-27, 1996 May 17.
Article in English | MEDLINE | ID: mdl-8658543

ABSTRACT

The fungicide, captan, induces a cellular stress response in the soil nematode Caenorhabditis elegans. Transgenic C, elegans, which produce beta-galactosidase as a surrogate stress protein, reveal that captan-induced stress is localized mainly to muscle cells of the pharynx. The stress response is elicited by captan concentrations above 5 ppm and occurs within five hours of the initial exposure to the fungicide. Higher concentrations of captan, up to the solubility limit, increase the intensity of the response. Adult nematodes are significantly more sensitive to captan than are larvae. Captan also inhibits feeding in C. elegans, and nematodes exposed to captan rapidly cease muscular contractions in the pharynx. Stress induction and feeding inhibition are also caused by the related fungicides, captafol and folpet, but not by the parent compounds, phthalimide and tetrahydrophthalimide. The inhibition of feeding caused by compounds which elicit the cellular stress response may be an important survival mechanism for C, elegans.


Subject(s)
Caenorhabditis elegans/drug effects , Captan/toxicity , Environmental Monitoring , Fungicides, Industrial/toxicity , Heat-Shock Proteins/biosynthesis , Animals , Animals, Genetically Modified , Blotting, Western , Caenorhabditis elegans/genetics , Caenorhabditis elegans/physiology , Captan/analogs & derivatives , Dose-Response Relationship, Drug , Eating/drug effects , Genes, Helminth , Heat-Shock Proteins/analysis , Heat-Shock Proteins/genetics , Promoter Regions, Genetic , Time Factors , beta-Galactosidase/biosynthesis , beta-Galactosidase/genetics
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