Liana functional assembly along the hydrological gradient in Central Amazonia.

Soil hydrology, nutrient availability, and forest disturbance determine the variation of tropical tree species composition locally. However, most habitat filtering is explained by tree species' hydraulic traits along the hydrological gradient. We asked whether these patterns apply to lianas. At the community level, we investigated whether hydrological gradient, soil fertility, and forest disturbance explain liana species composition and whether liana species-environment relationships are mediated by leaf and stem wood functional traits. We sampled liana species composition in 18 1-ha plots across a 64 km2 landscape in Central Amazonia and measured eleven leaf and stem wood traits across 115 liana species in 2000 individuals. We correlated liana species composition, summarized using PCoA with the functional composition summarized using principal coordinate analysis (PCA), employing species mean values of traits at the plot level. We tested the relationship between ordination axes and environmental gradients. Liana species composition was highly correlated with functional composition. Taxonomic (PCoA) and functional (PCA) compositions were strongly associated with the hydrological gradient, with a slight influence from forest disturbance on functional composition. Species in valley areas had larger stomata size and higher proportions of self-supporting xylem than in plateaus. Liana species on plateaus invest more in fast-growing leaves (higher SLA), although they show a higher wood density. Our study reveals that lianas use different functional solutions in dealing with each end of the hydrological gradient and that the relationships among habitat preferences and traits explain lianas species distributions less directly than previously found in trees.

Translocation of a gut pathobiont drives autoimmunity in mice and humans.

Despite multiple associations between the microbiota and immune diseases, their role in autoimmunity is poorly understood. We found that translocation of a gut pathobiont, Enterococcus gallinarum, to the liver and other systemic tissues triggers autoimmune responses in a genetic background predisposing to autoimmunity. Antibiotic treatment prevented mortality in this model, suppressed growth of E. gallinarum in tissues, and eliminated pathogenic autoantibodies and T cells. Hepatocyte-E. gallinarum cocultures induced autoimmune-promoting factors. Pathobiont translocation in monocolonized and autoimmune-prone mice induced autoantibodies and caused mortality, which could be prevented by an intramuscular vaccine targeting the pathobiont. E. gallinarum-specific DNA was recovered from liver biopsies of autoimmune patients, and cocultures with human hepatocytes replicated the murine findings; hence, similar processes apparently occur in susceptible humans. These discoveries show that a gut pathobiont can translocate and promote autoimmunity in genetically predisposed hosts.

Persistent effects of pre-Columbian plant domestication on Amazonian forest composition.

The extent to which pre-Columbian societies altered Amazonian landscapes is hotly debated. We performed a basin-wide analysis of pre-Columbian impacts on Amazonian forests by overlaying known archaeological sites in Amazonia with the distributions and abundances of 85 woody species domesticated by pre-Columbian peoples. Domesticated species are five times more likely than nondomesticated species to be hyperdominant. Across the basin, the relative abundance and richness of domesticated species increase in forests on and around archaeological sites. In southwestern and eastern Amazonia, distance to archaeological sites strongly influences the relative abundance and richness of domesticated species. Our analyses indicate that modern tree communities in Amazonia are structured to an important extent by a long history of plant domestication by Amazonian peoples.