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1.

A polymorphism in IRF4 affects human pigmentation through a tyrosinase-dependent MITF/TFAP2A pathway.

Praetorius, Christian; Grill, Christine; Stacey, Simon N; Metcalf, Alexander M; Gorkin, David U; Robinson, Kathleen C; Van Otterloo, Eric; Kim, Reuben S Q; Bergsteinsdottir, Kristin; Ogmundsdottir, Margret H; Magnusdottir, Erna; Mishra, Pravin J; Davis, Sean R; Guo, Theresa; Zaidi, M Raza; Helgason, Agnar S; Sigurdsson, Martin I; Meltzer, Paul S; Merlino, Glenn; Petit, Valerie; Larue, Lionel; Loftus, Stacie K; Adams, David R; Sobhiafshar, Ulduz; Emre, N C Tolga; Pavan, William J; Cornell, Robert; Smith, Aaron G; McCallion, Andrew S; Fisher, David E; Stefansson, Kari; Sturm, Richard A; Steingrimsson, Eirikur.

Cell ; 155(5): 1022-33, 2013 Nov 21.

Article in English | MEDLINE | ID: mdl-24267888

2.

Super-enhancers delineate disease-associated regulatory nodes in T cells.

Vahedi, Golnaz; Kanno, Yuka; Furumoto, Yasuko; Jiang, Kan; Parker, Stephen C J; Erdos, Michael R; Davis, Sean R; Roychoudhuri, Rahul; Restifo, Nicholas P; Gadina, Massimo; Tang, Zhonghui; Ruan, Yijun; Collins, Francis S; Sartorelli, Vittorio; O'Shea, John J.

Nature ; 520(7548): 558-62, 2015 Apr 23.

Article in English | MEDLINE | ID: mdl-25686607

3.

Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant.

Li, Jun; Woods, Susan L; Healey, Sue; Beesley, Jonathan; Chen, Xiaoqing; Lee, Jason S; Sivakumaran, Haran; Wayte, Nicci; Nones, Katia; Waterfall, Joshua J; Pearson, John; Patch, Anne-Marie; Senz, Janine; Ferreira, Manuel A; Kaurah, Pardeep; Mackenzie, Robertson; Heravi-Moussavi, Alireza; Hansford, Samantha; Lannagan, Tamsin R M; Spurdle, Amanda B; Simpson, Peter T; da Silva, Leonard; Lakhani, Sunil R; Clouston, Andrew D; Bettington, Mark; Grimpen, Florian; Busuttil, Rita A; Di Costanzo, Natasha; Boussioutas, Alex; Jeanjean, Marie; Chong, George; Fabre, Aurélie; Olschwang, Sylviane; Faulkner, Geoffrey J; Bellos, Evangelos; Coin, Lachlan; Rioux, Kevin; Bathe, Oliver F; Wen, Xiaogang; Martin, Hilary C; Neklason, Deborah W; Davis, Sean R; Walker, Robert L; Calzone, Kathleen A; Avital, Itzhak; Heller, Theo; Koh, Christopher; Pineda, Marbin; Rudloff, Udo; Quezado, Martha.

Am J Hum Genet ; 98(5): 830-842, 2016 05 05.

Article in English | MEDLINE | ID: mdl-27087319

4.

caOmicsV: an R package for visualizing multidimensional cancer genomic data.

Zhang, Hongen; Meltzer, Paul S; Davis, Sean R.

BMC Bioinformatics ; 17: 141, 2016 Mar 22.

Article in English | MEDLINE | ID: mdl-27005934

5.

Interaction of the glucocorticoid receptor with the chromatin landscape.

John, Sam; Sabo, Peter J; Johnson, Thomas A; Sung, Myong-Hee; Biddie, Simon C; Lightman, Stafford L; Voss, Ty C; Davis, Sean R; Meltzer, Paul S; Stamatoyannopoulos, John A; Hager, Gordon L.

Mol Cell ; 29(5): 611-24, 2008 Mar 14.

Article in English | MEDLINE | ID: mdl-18342607

6.

Modeling synovial sarcoma: timing is everything.

Davis, Sean R; Meltzer, Paul S.

Cancer Cell ; 11(4): 305-7, 2007 Apr.

Article in English | MEDLINE | ID: mdl-17418406

7.

Genome-wide depletion of replication initiation events in highly transcribed regions.

Martin, Melvenia M; Ryan, Michael; Kim, RyangGuk; Zakas, Anna L; Fu, Haiqing; Lin, Chii Mei; Reinhold, William C; Davis, Sean R; Bilke, Sven; Liu, Hongfang; Doroshow, James H; Reimers, Mark A; Valenzuela, Manuel S; Pommier, Yves; Meltzer, Paul S; Aladjem, Mirit I.

Genome Res ; 21(11): 1822-32, 2011 Nov.

Article in English | MEDLINE | ID: mdl-21813623

8.

SRAdb: query and use public next-generation sequencing data from within R.

Zhu, Yuelin; Stephens, Robert M; Meltzer, Paul S; Davis, Sean R.

BMC Bioinformatics ; 14: 19, 2013 Jan 17.

Article in English | MEDLINE | ID: mdl-23323543

9.

Harnessing genomics to identify environmental determinants of heritable disease.

Yauk, Carole Lyn; Lucas Argueso, J; Auerbach, Scott S; Awadalla, Philip; Davis, Sean R; DeMarini, David M; Douglas, George R; Dubrova, Yuri E; Elespuru, Rosalie K; Glover, Thomas W; Hales, Barbara F; Hurles, Matthew E; Klein, Catherine B; Lupski, James R; Manchester, David K; Marchetti, Francesco; Montpetit, Alexandre; Mulvihill, John J; Robaire, Bernard; Robbins, Wendie A; Rouleau, Guy A; Shaughnessy, Daniel T; Somers, Christopher M; Taylor, James G; Trasler, Jacquetta; Waters, Michael D; Wilson, Thomas E; Witt, Kristine L; Bishop, Jack B.

Mutat Res ; 752(1): 6-9, 2013.

Article in English | MEDLINE | ID: mdl-22935230

10.

TRAIL induces apoptosis in triple-negative breast cancer cells with a mesenchymal phenotype.

Rahman, Monzur; Davis, Sean R; Pumphrey, Janet G; Bao, Jing; Nau, Marion M; Meltzer, Paul S; Lipkowitz, Stanley.

Breast Cancer Res Treat ; 113(2): 217-30, 2009 Jan.

Article in English | MEDLINE | ID: mdl-18266105

11.

Resources for Interpreting Variants in Precision Genomic Oncology Applications.

Tsang, Hsinyi; Addepalli, KanakaDurga; Davis, Sean R.

Front Oncol ; 7: 214, 2017.

Article in English | MEDLINE | ID: mdl-28975082

12.

Autoreactive T Cells and Chronic Fungal Infection Drive Esophageal Carcinogenesis.

Zhu, Feng; Willette-Brown, Jami; Song, Na-Young; Lomada, Dakshayani; Song, Yongmei; Xue, Liyan; Gray, Zane; Zhao, Zitong; Davis, Sean R; Sun, Zhonghe; Zhang, Peilin; Wu, Xiaolin; Zhan, Qimin; Richie, Ellen R; Hu, Yinling.

Cell Host Microbe ; 21(4): 478-493.e7, 2017 Apr 12.

Article in English | MEDLINE | ID: mdl-28407484

13.

Software for the Integration of Multiomics Experiments in Bioconductor.

Ramos, Marcel; Schiffer, Lucas; Re, Angela; Azhar, Rimsha; Basunia, Azfar; Rodriguez, Carmen; Chan, Tiffany; Chapman, Phil; Davis, Sean R; Gomez-Cabrero, David; Culhane, Aedin C; Haibe-Kains, Benjamin; Hansen, Kasper D; Kodali, Hanish; Louis, Marie S; Mer, Arvind S; Riester, Markus; Morgan, Martin; Carey, Vince; Waldron, Levi.

Cancer Res ; 77(21): e39-e42, 2017 11 01.

Article in English | MEDLINE | ID: mdl-29092936

14.

On the Selective Packaging of Genomic RNA by HIV-1.

Comas-Garcia, Mauricio; Davis, Sean R; Rein, Alan.

Viruses ; 8(9)2016 09 12.

Article in English | MEDLINE | ID: mdl-27626441

15.

Characterization of genomic alterations in radiation-associated breast cancer among childhood cancer survivors, using comparative genomic hybridization (CGH) arrays.

Yang, Xiaohong R; Killian, J Keith; Hammond, Sue; Burke, Laura S; Bennett, Hunter; Wang, Yonghong; Davis, Sean R; Strong, Louise C; Neglia, Joseph; Stovall, Marilyn; Weathers, Rita E; Robison, Leslie L; Bhatia, Smita; Mabuchi, Kiyohiko; Inskip, Peter D; Meltzer, Paul.

PLoS One ; 10(3): e0116078, 2015.

Article in English | MEDLINE | ID: mdl-25764003

16.

High prevalence of MAP2K1 mutations in variant and IGHV4-34-expressing hairy-cell leukemias.

Waterfall, Joshua J; Arons, Evgeny; Walker, Robert L; Pineda, Marbin; Roth, Laura; Killian, J Keith; Abaan, Ogan D; Davis, Sean R; Kreitman, Robert J; Meltzer, Paul S.

Nat Genet ; 46(1): 8-10, 2014 Jan.

Article in English | MEDLINE | ID: mdl-24241536

17.

NCI-60 whole exome sequencing and pharmacological CellMiner analyses.

Reinhold, William C; Varma, Sudhir; Sousa, Fabricio; Sunshine, Margot; Abaan, Ogan D; Davis, Sean R; Reinhold, Spencer W; Kohn, Kurt W; Morris, Joel; Meltzer, Paul S; Doroshow, James H; Pommier, Yves.

PLoS One ; 9(7): e101670, 2014.

Article in English | MEDLINE | ID: mdl-25032700

18.

The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology.

Abaan, Ogan D; Polley, Eric C; Davis, Sean R; Zhu, Yuelin J; Bilke, Sven; Walker, Robert L; Pineda, Marbin; Gindin, Yevgeniy; Jiang, Yuan; Reinhold, William C; Holbeck, Susan L; Simon, Richard M; Doroshow, James H; Pommier, Yves; Meltzer, Paul S.

Cancer Res ; 73(14): 4372-82, 2013 Jul 15.

Article in English | MEDLINE | ID: mdl-23856246

19.

Kinetic complexity of the global response to glucocorticoid receptor action.

John, Sam; Johnson, Thomas A; Sung, Myong-Hee; Biddie, Simon C; Trump, Saskia; Koch-Paiz, Christine A; Davis, Sean R; Walker, Robert; Meltzer, Paul S; Hager, Gordon L.

Endocrinology ; 150(4): 1766-74, 2009 Apr.

Article in English | MEDLINE | ID: mdl-19131569

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