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1.
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions.
Bioinformatics
; 34(9): 1594-1596, 2018 05 01.
Article
in English
| MEDLINE | ID: mdl-29267848
2.
Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.
J Proteome Res
; 15(11): 4091-4100, 2016 11 04.
Article
in English
| MEDLINE | ID: mdl-27577934
3.
A standardized framing for reporting protein identifications in mzIdentML 1.2.
Proteomics
; 14(21-22): 2389-99, 2014 Nov.
Article
in English
| MEDLINE | ID: mdl-25092112
4.
State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project.
J Proteome Res
; 13(1): 60-75, 2014 Jan 03.
Article
in English
| MEDLINE | ID: mdl-24261998
5.
The state of the human proteome in 2012 as viewed through PeptideAtlas.
J Proteome Res
; 12(1): 162-71, 2013 Jan 04.
Article
in English
| MEDLINE | ID: mdl-23215161
6.
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes.
Nat Methods
; 7(1): 43-6, 2010 Jan.
Article
in English
| MEDLINE | ID: mdl-19966807
7.
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.
Mol Cell Proteomics
; 10(9): M110.006353, 2011 Sep.
Article
in English
| MEDLINE | ID: mdl-21632744
8.
A Bovine PeptideAtlas of milk and mammary gland proteomes.
Proteomics
; 12(18): 2895-9, 2012 Sep.
Article
in English
| MEDLINE | ID: mdl-22837157
9.
PASSEL: the PeptideAtlas SRMexperiment library.
Proteomics
; 12(8): 1170-5, 2012 Apr.
Article
in English
| MEDLINE | ID: mdl-22318887
10.
A guided tour of the Trans-Proteomic Pipeline.
Proteomics
; 10(6): 1150-9, 2010 Mar.
Article
in English
| MEDLINE | ID: mdl-20101611
11.
Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.
Proteomics
; 10(6): 1190-5, 2010 Mar.
Article
in English
| MEDLINE | ID: mdl-20082347
12.
Author Correction: Parent-of-origin-specific signatures of de novo mutations.
Nat Genet
; 50(11): 1615, 2018 11.
Article
in English
| MEDLINE | ID: mdl-30291356
13.
Parent-of-origin-specific signatures of de novo mutations.
Nat Genet
; 48(8): 935-9, 2016 08.
Article
in English
| MEDLINE | ID: mdl-27322544
14.
Identification of copy number variants in whole-genome data using Reference Coverage Profiles.
Front Genet
; 6: 45, 2015.
Article
in English
| MEDLINE | ID: mdl-25741365
15.
Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics.
Curr Protoc Bioinformatics
; 46: 13.25.1-13.25.28, 2014 Jun 17.
Article
in English
| MEDLINE | ID: mdl-24939129
16.
The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis.
Cell Host Microbe
; 13(5): 602-612, 2013 May 15.
Article
in English
| MEDLINE | ID: mdl-23684311
17.
Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics.
Sci Transl Med
; 4(142): 142ra94, 2012 Jul 11.
Article
in English
| MEDLINE | ID: mdl-22786679
18.
Using the Human Plasma PeptideAtlas to study human plasma proteins.
Methods Mol Biol
; 728: 349-74, 2011.
Article
in English
| MEDLINE | ID: mdl-21468960
19.
ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Nat Biotechnol
; 32(3): 223-6, 2014 Mar.
Article
in English
| MEDLINE | ID: mdl-24727771
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