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1.

A Placebo-controlled double-blinded test of the biodiversity hypothesis of immune-mediated diseases: Environmental microbial diversity elicits changes in cytokines and increase in T regulatory cells in young children.

Roslund, Marja I; Parajuli, Anirudra; Hui, Nan; Puhakka, Riikka; Grönroos, Mira; Soininen, Laura; Nurminen, Noora; Oikarinen, Sami; Cinek, Ondrej; Kramná, Lenka; Schroderus, Anna-Mari; Laitinen, Olli H; Kinnunen, Tuure; Hyöty, Heikki; Sinkkonen, Aki.

Ecotoxicol Environ Saf ; 242: 113900, 2022 Sep 01.

Article in English | MEDLINE | ID: mdl-35930838

2.

Parechovirus Infection in Early Childhood and Association With Subsequent Celiac Disease.

Tapia, German; Chudá, Katerina; Kahrs, Christian R; Stene, Lars C; Kramna, Lenka; Mårild, Karl; Rasmussen, Trond; Rønningen, Kjersti S; Cinek, Ondrej; Størdal, Ketil.

Am J Gastroenterol ; 116(4): 788-795, 2021 04.

Article in English | MEDLINE | ID: mdl-33982949

3.

Eukaryotic viruses in the fecal virome at the onset of type 1 diabetes: A study from four geographically distant African and Asian countries.

Cinek, Ondrej; Kramna, Lenka; Odeh, Rasha; Alassaf, Abeer; Ibekwe, Mary Ann Ugochi; Ahmadov, Gunduz; Elmahi, Bashir Mukhtar Elwasila; Mekki, Hanan; Lebl, Jan; Abdullah, Mohammed Ahmed.

Pediatr Diabetes ; 22(4): 558-566, 2021 06.

Article in English | MEDLINE | ID: mdl-33786936

4.

Human gut microbiota transferred to germ-free NOD mice modulate the progression towards type 1 diabetes regardless of the pace of beta cell function loss in the donor.

Neuman, Vit; Cinek, Ondrej; Funda, David P; Hudcovic, Tomas; Golias, Jaroslav; Kramna, Lenka; Petruzelkova, Lenka; Pruhova, Stepanka; Sumnik, Zdenek.

Diabetologia ; 62(7): 1291-1296, 2019 07.

Article in English | MEDLINE | ID: mdl-31025045

5.

Virus genotyping by massive parallel amplicon sequencing: adenovirus and enterovirus in the Norwegian MIDIA study.

Cinek, Ondrej; Kramna, Lenka; Mazankova, Karla; Kunteová, Katerina; Chudá, Katerina; C J Claas, Eric; Stene, Lars C; Tapia, German.

J Med Virol ; 91(4): 606-614, 2019 04.

Article in English | MEDLINE | ID: mdl-30537228

6.

Quantitative CrAssphage real-time PCR assay derived from data of multiple geographically distant populations.

Cinek, Ondrej; Mazankova, Karla; Kramna, Lenka; Odeh, Rasha; Alassaf, Abeer; Ibekwe, MaryAnn U; Ahmadov, Gunduz; Mekki, Hanan; Abdullah, Mohammed A; Elmahi, Bashir M E; Hyöty, Heikki; Rainetova, Petra.

J Med Virol ; 90(4): 767-771, 2018 04.

Article in English | MEDLINE | ID: mdl-29297933

7.

Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.

Lin, Jake; Kramna, Lenka; Autio, Reija; Hyöty, Heikki; Nykter, Matti; Cinek, Ondrej.

BMC Genomics ; 18(1): 378, 2017 05 15.

Article in English | MEDLINE | ID: mdl-28506246

8.

Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls.

Cinek, Ondrej; Kramna, Lenka; Lin, Jake; Oikarinen, Sami; Kolarova, Katerina; Ilonen, Jorma; Simell, Olli; Veijola, Riitta; Autio, Reija; Hyöty, Heikki.

Pediatr Diabetes ; 18(7): 588-598, 2017 Nov.

Article in English | MEDLINE | ID: mdl-27860030

9.

Moraxella catarrhalis Might Be More Common than Expected in Acute Otitis Media in Young Finnish Children.

Sillanpää, Saara; Oikarinen, Sami; Sipilä, Markku; Kramna, Lenka; Rautiainen, Markus; Huhtala, Heini; Aittoniemi, Janne; Laranne, Jussi; Hyöty, Heikki; Cinek, Ondrej.

J Clin Microbiol ; 54(9): 2373-9, 2016 09.

Article in English | MEDLINE | ID: mdl-27413187

10.

Enterovirus RNA in longitudinal blood samples and risk of islet autoimmunity in children with a high genetic risk of type 1 diabetes: the MIDIA study.

Cinek, Ondrej; Stene, Lars C; Kramna, Lenka; Tapia, German; Oikarinen, Sami; Witsø, Elisabet; Rasmussen, Trond; Torjesen, Peter A; Hyöty, Heikki; Rønningen, Kjersti S.

Diabetologia ; 57(10): 2193-200, 2014 Oct.

Article in English | MEDLINE | ID: mdl-25047648

11.

Skin, gut, and sand metagenomic data on placebo-controlled sandbox biodiversity intervention study.

Roslund, Marja I; Parajuli, Anirudra; Hui, Nan; Puhakka, Riikka; Grönroos, Mira; Soininen, Laura; Nurminen, Noora; Oikarinen, Sami; Cinek, Ondrej; Kramná, Lenka; Schroderus, Anna-Mari; Laitinen, Olli H; Kinnunen, Tuure; Hyöty, Heikki; Sinkkonen, Aki.

Data Brief ; 47: 109003, 2023 Apr.

Article in English | MEDLINE | ID: mdl-36915639

12.

Protocol for faecal microbiota transplantation in irritable bowel syndrome: the MISCEAT study - a randomised, double-blind cross-over study using mixed microbiota from healthy donors.

Hurych, Jakub; Vejmelka, Jiri; Hlinakova, Lucie; Kramna, Lenka; Larionov, Vladyslav; Kulich, Michal; Cinek, Ondrej; Kohout, Pavel.

BMJ Open ; 12(6): e056594, 2022 06 27.

Article in English | MEDLINE | ID: mdl-35760542

13.

Gut microbiome diversity of porcine peritonitis model of sepsis.

Chalupova, Miroslava; Horak, Jan; Kramna, Lenka; Nalos, Lukas; Stengl, Milan; Chudejova, Katerina; Kraftova, Lucie; Cinek, Ondrej; Klein, Pavel; Matejovic, Martin; Hrabak, Jaroslav.

Sci Rep ; 12(1): 17430, 2022 10 19.

Article in English | MEDLINE | ID: mdl-36261543

14.

Coxsackievirus B4 sewage-isolate induces pancreatitis after oral infection of mice.

Benkoova, Brigita; Pospisilova, Michaela; Kramna, Lenka; Kissova, Renata; Berakova, Katarina; Klement, Cyril; Cinek, Ondrej; Bopegamage, Shubhada.

FEMS Microbiol Lett ; 368(15)2021 08 06.

Article in English | MEDLINE | ID: mdl-34297106

15.

Blastocystis in the faeces of children from six distant countries: prevalence, quantity, subtypes and the relation to the gut bacteriome.

Cinek, Ondrej; Polackova, Katerina; Odeh, Rasha; Alassaf, Abeer; Kramná, Lenka; Ibekwe, MaryAnn Ugochi; Majaliwa, Edna Siima; Ahmadov, Gunduz; Elmahi, Bashir Mukhtar Elwasila; Mekki, Hanan; Oikarinen, Sami; Lebl, Jan; Abdullah, Mohammed Ahmed.

Parasit Vectors ; 14(1): 399, 2021 Aug 12.

Article in English | MEDLINE | ID: mdl-34384477

16.

Long-term biodiversity intervention shapes health-associated commensal microbiota among urban day-care children.

Roslund, Marja I; Puhakka, Riikka; Nurminen, Noora; Oikarinen, Sami; Siter, Nathan; Grönroos, Mira; Cinek, Ondrej; Kramná, Lenka; Jumpponen, Ari; Laitinen, Olli H; Rajaniemi, Juho; Hyöty, Heikki; Sinkkonen, Aki.

Environ Int ; 157: 106811, 2021 12.

Article in English | MEDLINE | ID: mdl-34403882

17.

Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children.

Roslund, Marja I; Puhakka, Riikka; Grönroos, Mira; Nurminen, Noora; Oikarinen, Sami; Gazali, Ahmad M; Cinek, Ondrej; Kramná, Lenka; Siter, Nathan; Vari, Heli K; Soininen, Laura; Parajuli, Anirudra; Rajaniemi, Juho; Kinnunen, Tuure; Laitinen, Olli H; Hyöty, Heikki; Sinkkonen, Aki.

Sci Adv ; 6(42)2020 10.

Article in English | MEDLINE | ID: mdl-33055153

18.

Yard vegetation is associated with gut microbiota composition.

Parajuli, Anirudra; Hui, Nan; Puhakka, Riikka; Oikarinen, Sami; Grönroos, Mira; Selonen, Ville A O; Siter, Nathan; Kramna, Lenka; Roslund, Marja I; Vari, Heli K; Nurminen, Noora; Honkanen, Hanna; Hintikka, Jukka; Sarkkinen, Hannu; Romantschuk, Martin; Kauppi, Markku; Valve, Raisa; Cinek, Ondrej; Laitinen, Olli H; Rajaniemi, Juho; Hyöty, Heikki; Sinkkonen, Aki.

Sci Total Environ ; 713: 136707, 2020 Apr 15.

Article in English | MEDLINE | ID: mdl-32019041

19.

Enterovirus as trigger of coeliac disease: nested case-control study within prospective birth cohort.

Kahrs, Christian R; Chuda, Katerina; Tapia, German; Stene, Lars C; Mårild, Karl; Rasmussen, Trond; Rønningen, Kjersti S; Lundin, Knut E A; Kramna, Lenka; Cinek, Ondrej; Størdal, Ketil.

BMJ ; 364: l231, 2019 Feb 13.

Article in English | MEDLINE | ID: mdl-30760441

20.

Virome Sequencing of Stool Samples.

Kramná, Lenka; Cinek, Ondrej.

Methods Mol Biol ; 1838: 59-83, 2018.

Article in English | MEDLINE | ID: mdl-30128990

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