Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 44
Filter
1.
Stem Cells ; 37(6): 731-742, 2019 06.
Article in English | MEDLINE | ID: mdl-30920104

ABSTRACT

In glioblastomas, apoptosis inhibitor proteins (IAPs) are involved in apoptotic and nonapoptotic processes. We previously showed that IAP inhibition induced a loss of stemness and glioblastoma stem cells differentiation by activating nuclear factor-κB under normoxic conditions. Hypoxia has been shown to modulate drug efficacy. Here, we investigated how IAPs participate in glioblastoma stem-like cell maintenance and fate under hypoxia. We showed that in a hypoxic environment, IAPs inhibition by GDC-0152, a small-molecule IAPs inhibitor, triggered stem-like cell apoptosis and decreased proliferation in four human glioblastoma cell lines. We set up a three-dimensional glioblastoma spheroid model in which time-of-flight secondary ion mass spectrometry analyses revealed a decrease in oxygen levels between the periphery and core. We observed low proliferative and apoptotic cells located close to the hypoxic core of the spheres and glial fibrillary acidic protein+ cells at their periphery. These oxygen-dependent GDC-0152 antitumoral effects have been confirmed on human glioblastoma explants. Notably, serine-threonine kinase activation analysis revealed that under hypoxic conditions, IAP inhibition activated ataxia telangiectasia and Rad3-related protein signaling. Our findings provide new insights into the dual mechanism of action of IAP inhibitors that depends on oxygen level and are relevant to their therapeutic application in tumors. Stem Cells 2019;37:731-742.


Subject(s)
Apoptosis/genetics , Brain Neoplasms/genetics , Gene Expression Regulation, Neoplastic , Glioblastoma/genetics , Neoplastic Stem Cells/metabolism , Oxygen/pharmacology , Adaptor Proteins, Signal Transducing/antagonists & inhibitors , Adaptor Proteins, Signal Transducing/genetics , Adaptor Proteins, Signal Transducing/metabolism , Adrenomedullin/genetics , Adrenomedullin/metabolism , Apoptosis/drug effects , Baculoviral IAP Repeat-Containing 3 Protein/antagonists & inhibitors , Baculoviral IAP Repeat-Containing 3 Protein/genetics , Baculoviral IAP Repeat-Containing 3 Protein/metabolism , Brain Neoplasms/metabolism , Brain Neoplasms/pathology , Carbonic Anhydrase IX/genetics , Carbonic Anhydrase IX/metabolism , Cell Differentiation/drug effects , Cell Hypoxia/genetics , Cell Line, Tumor , Cell Proliferation/drug effects , Cyclohexanes/pharmacology , Enzyme Inhibitors/pharmacology , Glioblastoma/metabolism , Glioblastoma/pathology , Humans , Inhibitor of Apoptosis Proteins/antagonists & inhibitors , Inhibitor of Apoptosis Proteins/genetics , Inhibitor of Apoptosis Proteins/metabolism , Neoplasm Proteins/antagonists & inhibitors , Neoplasm Proteins/genetics , Neoplasm Proteins/metabolism , Neoplastic Stem Cells/drug effects , Neoplastic Stem Cells/pathology , Oxygen/metabolism , Pyrroles/pharmacology , Signal Transduction , Spheroids, Cellular/drug effects , Spheroids, Cellular/metabolism , Spheroids, Cellular/pathology , Tissue Culture Techniques , X-Linked Inhibitor of Apoptosis Protein/antagonists & inhibitors , X-Linked Inhibitor of Apoptosis Protein/genetics , X-Linked Inhibitor of Apoptosis Protein/metabolism
2.
Anal Chem ; 90(3): 2302-2309, 2018 02 06.
Article in English | MEDLINE | ID: mdl-29309134

ABSTRACT

Because of inhomogeneous matrix-assisted laser desorption/ionization (MALDI) matrix crystallization and laser shot-to-shot variability, quantitation is not generally performed by MALDI mass spectrometry. Here we introduce a high-throughput MALDI method using an innovative high-density microarray for mass spectrometry (MAMS) technology, which allows semiquantitative measurement of cocaine and its metabolites, benzoylecgonine, cocaethylene, and ecgonine methyl ester. A MAMS slide containing lanes of hydrophilic spots and an automated slider to drag a sample droplet over several small spots can accomplish automatic sample aliquoting and lead to homogeneous crystallization of the matrix-analyte mixture and, thus, to a reproducible signal (average RSD 6%). Four hair samples of self-reported drug users were analyzed in parallel by MALDI-MS/MS and by a validated LC-MS/MS method. The consumption profiles as well as the metabolite-parent drug ratios obtained correlated well, confirming the effectiveness of the MALDI-MS/MS method to establish a calendar of consumption in only 1 mg of hair. The analysis time for 10 hair samples is below 40 min, with 12 replicates per sample. Since only 3 µL of a 20 µL extract is analyzed, complementary assays are possible, such as the detection of additional drugs. The semiquantitative MALDI method worked well with only a small amount of hair and gave results in less than 4 min per sample, including replicates. This was made possible by the use of MAMS slides for sample preparation, which thus present significant advantages over traditional methods in cases where results are required urgently or if samples are scarce.


Subject(s)
Cocaine/analysis , Hair/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Adult , Cocaine/analogs & derivatives , Female , Humans , Limit of Detection , Male , Reproducibility of Results
3.
Proteomics ; 14(10): 1290-301, 2014 May.
Article in English | MEDLINE | ID: mdl-24376047

ABSTRACT

Glioblastoma multiforme is one of the most common intracranial tumors encountered in adults. This tumor of very poor prognosis is associated with a median survival rate of approximately 14 months. One of the major issues to better understand the biology of these tumors and to optimize the therapy is to obtain the molecular structure of glioblastoma. MALDI molecular imaging enables location of molecules in tissues without labeling. However, molecular identification in situ is not an easy task. In this paper, we used MALDI imaging coupled to in-source decay to characterize markers of this pathology. We provided MALDI molecular images up to 30 µm spatial resolution of mouse brain tissue sections. MALDI images showed the heterogeneity of the glioblastoma. In the various zones and at various development stages of the tumor, using our top-down strategy, we identified several proteins. These proteins play key roles in tumorigenesis. Particular attention was given to the necrotic area with characterization of hemorrhage, one of the most important poor prognosis factors in glioblastoma.


Subject(s)
Brain Neoplasms/pathology , Glioblastoma/pathology , Molecular Imaging/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Animals , Brain/pathology , Cell Line, Tumor , Female , Humans , Image Processing, Computer-Assisted , Male , Mice , Mice, Nude
4.
J Biol Chem ; 288(13): 8991-9000, 2013 Mar 29.
Article in English | MEDLINE | ID: mdl-23389031

ABSTRACT

The melanoma cell adhesion molecule (CD146) contains a circulating proteolytic variant (sCD146), which is involved in inflammation and angiogenesis. Its circulating level is modulated in different pathologies, but its intracellular transduction pathways are still largely unknown. Using peptide pulldown and mass spectrometry, we identified angiomotin as a sCD146-associated protein in endothelial progenitor cells (EPC). Interaction between angiomotin and sCD146 was confirmed by enzyme-linked immunosorbent assay (ELISA), homogeneous time-resolved fluorescence, and binding of sCD146 on both immobilized recombinant angiomotin and angiomotin-transfected cells. Silencing angiomotin in EPC inhibited sCD146 angiogenic effects, i.e. EPC migration, proliferation, and capacity to form capillary-like structures in Matrigel. In addition, sCD146 effects were inhibited by the angiomotin inhibitor angiostatin and competition with recombinant angiomotin. Finally, binding of sCD146 on angiomotin triggered the activation of several transduction pathways that were identified by antibody array. These results delineate a novel signaling pathway where sCD146 binds to angiomotin to stimulate a proangiogenic response. This result is important to find novel target cells of sCD146 and for the development of therapeutic strategies based on EPC in the treatment of ischemic diseases.


Subject(s)
CD146 Antigen/blood , Endothelium, Vascular/metabolism , Intercellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/metabolism , Neovascularization, Pathologic , Stem Cells/cytology , Angiomotins , Angiostatins/metabolism , Capillaries/metabolism , Collagen/chemistry , Drug Combinations , Endothelial Cells/cytology , Enzyme-Linked Immunosorbent Assay/methods , Gene Silencing , Human Umbilical Vein Endothelial Cells , Humans , Laminin/chemistry , Mass Spectrometry/methods , Microfilament Proteins , Microscopy, Fluorescence/methods , Proteoglycans/chemistry , RNA, Small Interfering/metabolism , Recombinant Proteins/metabolism , Signal Transduction , Spectrometry, Fluorescence/methods , Wound Healing
5.
Anal Chem ; 86(19): 9954-61, 2014 Oct 07.
Article in English | MEDLINE | ID: mdl-25219896

ABSTRACT

Monitoring bioactive oxidized phospholipids (OxPLs), such as 1-palmitoyl-2-(5'-oxovaleroyl)-sn-glycero-3-phosphocholine (POVPC) and 1-palmitoyl-2-(9'-oxononanoyl)-sn-glycero-3-phosphocholine (PONPC), is of major interest as they play a crucial role in a variety of age related diseases, e.g., in the development and progression of atherosclerosis. Since they are in low abundance in samples like oxidized low-density lipoproteins (OxLDL) and human plasma, respectively, their analysis as risk biomarkers requires the combination of an efficient selective sample preparation with highly sensitive detection methods, such as liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS). In this study, a nanoparticle-based strategy for successful trapping and enrichment of aldehyde-containing oxidized phospholipids is presented. The concept involves a derivatization step with a bifunctional reagent containing both a hydrazide group for hydrazone formation with carbonyl-containing PLs and a thiol moiety for subsequent trapping on GNPs. After washing, the trapped analytes are quantitatively released from the nanoparticles' surface by transimination with hydroxylamine. The released oxime-derivatives of the carbonylated-OxPLs are subsequently analyzed by LC-ESI-MS/MS in the selected reaction monitoring scan mode. Several parameters of this workflow were optimized. With the optimized nanoparticle-based extraction and enrichment step, very clean extracts of these biomarkers can be obtained and the detection limits can be significantly decreased from 2.76 and 2.65 nM for PONPC and POVPC, respectively, to 0.17 and 0.44 nM. The applicability of this nanoparticle-based sample preparation concept was demonstrated by successful extraction of oxidized phospholipids from biological samples, such as human plasma, MDA-modified LDL and Cu(2+)-oxidized LDL.


Subject(s)
Epitopes/blood , Lipoproteins, LDL/blood , Phosphatidylcholines/blood , Phospholipid Ethers/blood , Biomarkers/blood , Biomarkers/chemistry , Epitopes/chemistry , Humans , Hydroxylamine/chemistry , Limit of Detection , Lipoproteins, LDL/chemistry , Nanoparticles/chemistry , Oxidation-Reduction , Phosphatidylcholines/chemistry , Phospholipid Ethers/chemistry , Spectrometry, Mass, Electrospray Ionization , Tandem Mass Spectrometry
6.
Brain ; 136(Pt 8): 2457-73, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23831613

ABSTRACT

Altered development of the human cerebral cortex can cause severe malformations with often intractable focal epileptic seizures and may participate in common pathologies, notably epilepsy. This raises important conceptual and therapeutic issues. Two missense mutations in the sushi repeat-containing protein SRPX2 had been previously identified in epileptic disorders with or without structural developmental alteration of the speech cortex. In the present study, we aimed to decipher the precise developmental role of SRPX2, to have a better knowledge on the consequences of its mutations, and to start addressing therapeutic issues through the design of an appropriate animal model. Using an in utero Srpx2 silencing approach, we show that SRPX2 influences neuronal migration in the developing rat cerebral cortex. Wild-type, but not the mutant human SRPX2 proteins, rescued the neuronal migration phenotype caused by Srpx2 silencing in utero, and increased alpha-tubulin acetylation. Following in utero Srpx2 silencing, spontaneous epileptiform activity was recorded post-natally. The neuronal migration defects and the post-natal epileptic consequences were prevented early in embryos by maternal administration of tubulin deacetylase inhibitor tubacin. Hence epileptiform manifestations of developmental origin could be prevented in utero, using a transient and drug-based therapeutic protocol.


Subject(s)
Anilides/pharmacology , Cell Movement/genetics , Cerebral Cortex/metabolism , Epilepsy/genetics , Histone Deacetylase Inhibitors/pharmacology , Hydroxamic Acids/pharmacology , Membrane Proteins/genetics , Neurons/metabolism , Animals , Cell Movement/drug effects , Cerebral Cortex/cytology , Cerebral Cortex/drug effects , Epilepsy/metabolism , Gene Silencing , Humans , Neurons/cytology , Neurons/drug effects , Rats , Tubulin/genetics , Tubulin/metabolism
7.
J Anal Toxicol ; 47(5): 417-428, 2023 May 19.
Article in English | MEDLINE | ID: mdl-36847154

ABSTRACT

The value of hair in forensic toxicology has already been widely demonstrated. It offers a much wider detection window than other matrices, and its segmental analysis allows the documentation of a single, occasional or regular consumption of a large number of molecules. To date, considerable efforts are being made to achieve very high sensitivity using increasingly effective techniques in the forensic analysis of hair (gas chromatography with electron ionization mass spectrometry (GC--EI-MS); gas chromatography with chemical ionization mass spectrometry (GC--CI-MS); gas chromatography-tandem mass spectrometry (GC--MS-MS); high or ultra performance liquid chromatography-tandem mass spectrometry (HPLC-MS-MS and UPLC-MS-MS)). Since the early 2000s, work has been carried out to analyze hair using matrix-assisted laser desorption ionization (MALDI) coupled with imaging mass spectrometry (IMS). Intact, cut or pulverized, human head hairs are analyzed in all their forms. With a simplified and rapid sample preparation protocol, MALDI-IMS appears to be an attractive option for the forensic interpretation of hair analysis. The high spatial resolution clearly competes with conventional methods and strand segmentation. This article provides a complete overview on MALDI techniques used and its applications to better understand the pre-analytical and the analytical parts in the hair analysis.


Subject(s)
Hair , Tandem Mass Spectrometry , Humans , Chromatography, Liquid , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Gas Chromatography-Mass Spectrometry , Hair/chemistry
8.
Mar Pollut Bull ; 191: 114898, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37030168

ABSTRACT

There are few cetacean tissue-specific polycyclic aromatic hydrocarbon (PAH) concentration studies in the Mediterranean, despite this region is among the most subjected to chemical contamination. PAH analyses were conducted in different tissues of striped dolphins (Stenella coeruleoalba, N = 64) and bottlenose dolphins (Tursiops truncatus, N = 9) stranded along the French Mediterranean coastline from 2010 to 2016. Comparable levels were measured in S. coeruleoalba and T. trucantus (1020 and 981 ng g-1 lipid weight in blubber, 228 and 238 ng g-1 dry weight in muscle, respectively). The results suggested a slight effect of maternal transfer. The greatest levels were recorded by urban and industrial centers, and decreasing temporal trends were observed in males muscle and kidney, but not in other tissues. As a conclusion, the elevated levels measured could represent a serious threat to dolphins populations in this region, particularly by urban and industrial centers.


Subject(s)
Bottle-Nosed Dolphin , Stenella , Animals , Male , Cetacea , Mediterranean Sea
9.
Anal Chem ; 84(12): 5180-5, 2012 Jun 19.
Article in English | MEDLINE | ID: mdl-22721425

ABSTRACT

In-source decay (ISD), although a process known for decades in mass spectrometry, has a renewed interest due to increased theoretical knowledge in fragmentation processes of large biomolecules coupled with technological improvements. We report here an original method consisting of isolating matrix-assisted laser desorption ionization (MALDI)-generated in-source fragments of large proteins and subsequently performing selective fragmentation experiments (up to four cycles) using a hybrid MALDI quadrupole ion-trap time-of-flight mass spectrometer (MALDI-QIT-TOF). This technology takes advantage of keeping high resolution on the selection of precursors and detection of fragments. It allows exhaustive N- and C-terminal sequencing of proteins. In this work, human serum albumin (HSA), ß-casein, and recombinant Tau proteins were submitted to in source decay in the MALDI source. The fragments were stored in the ion-trap and submitted to sequential collision-induced dissociation (CID). Finally, ISD and pseudo MS(n) were performed on oxidized Tau protein and acetylated bovine serum albumin to identify amino acid modifications. This work highlights the potential of the MALDI-QIT-TOF instrument for pseudo MS(n) strategies and top down proteomics.


Subject(s)
Proteins/analysis , Proteins/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Tandem Mass Spectrometry/methods , Amino Acid Sequence , Animals , Cattle , Humans , Molecular Sequence Data , Molecular Weight , Time Factors
10.
Mar Pollut Bull ; 174: 113198, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34875476

ABSTRACT

Although banned for years, organochlorine pesticides and PCBs continue to affect aquatic life, dolphins being particularly exposed. The concentrations of 31 PCB congeners, and 15 banned pesticides or metabolites were measured in 5 tissues of 68 striped dolphins stranded in the Northwestern Mediterranean coast in 2010-16. The results were compared to historical data (1988-2009) and, even though there is a slow decreasing trend, the levels in the 2010-2016 samples were still elevated based on common cetacean toxicological thresholds. A transition period in 2007-08, probably caused by a morbillivirus epizootic amplified the stranding, espacially of highly contaminated specimens. From 2010, higher proportions in parent compounds towards metabolites were observed yet again. These changing patterns were likely reflect the exposure of dolphins to the remobilization of pollutants from contaminated soils and sediments, with a prominent role of rivers. This should lead to an even slower decline of these contaminants that could last for decades, requiring new efforts to reduce their dispersal to aquatic ecosystems.


Subject(s)
Morbillivirus Infections , Pesticides , Polychlorinated Biphenyls , Stenella , Animals , Ecosystem , Mediterranean Sea , Polychlorinated Biphenyls/analysis
11.
Commun Biol ; 5(1): 1059, 2022 10 05.
Article in English | MEDLINE | ID: mdl-36198902

ABSTRACT

Gram-negative porins are the main entry for small hydrophilic molecules. We studied translocation of structurally related cephalosporins, ceftazidime (CAZ), cefotaxime (CTX) and cefepime (FEP). CAZ is highly active on E. coli producing OmpF (Outer membrane protein F) but less efficient on cells expressing OmpC (Outer membrane protein C), whereas FEP and CTX kill bacteria regardless of the porin expressed. This matches with the different capacity of CAZ and FEP to accumulate into bacterial cells as quantified by LC-MS/MS (Liquid Chromatography Tandem Mass Spectrometry). Furthermore, porin reconstitution into planar lipid bilayer and zero current assays suggest permeation of ≈1,000 molecules of CAZ per sec and per channel through OmpF versus ≈500 through OmpC. Here, the instant killing is directly correlated to internal drug concentration. We propose that the net negative charge of CAZ represents a key advantage for permeation through OmpF porins that are less cation-selective than OmpC. These data could explain the decreased susceptibility to some cephalosporins of enterobacteria that exclusively express OmpC porins.


Subject(s)
Cephalosporins , Enterobacteriaceae , Cefepime/metabolism , Cefotaxime/metabolism , Ceftazidime , Cephalosporins/pharmacology , Chromatography, Liquid , Escherichia coli/metabolism , Lipid Bilayers/metabolism , Monobactams/metabolism , Porins/chemistry , Porins/metabolism , Tandem Mass Spectrometry
12.
Cell Mol Life Sci ; 67(7): 1089-104, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20107862

ABSTRACT

This review explores various aspects of the interaction between microtubule targeting agents and tubulin, including binding site, affinity, and drug resistance. Starting with the basics of tubulin polymerization and microtubule targeting agent binding, we then highlight how the three-dimensional structures of drug-tubulin complexes obtained on stabilized tubulin are seeded by precise biological and biophysical data. New avenues opened by thermodynamics analysis, high throughput screening, and proteomics for the molecular pharmacology of these drugs are presented. The amount of data generated by biophysical, proteomic and cellular techniques shed more light onto the microtubule-tubulin equilibrium and tubulin-drug interaction. Combining these approaches provides new insight into the mechanism of action of known microtubule interacting agents and rapid in-depth characterization of next generation molecules targeting the interaction between microtubules and associated modulators of their dynamics. This will facilitate the design of improved and/or alternative chemotherapies targeting the microtubule cytoskeleton.


Subject(s)
Microtubules/chemistry , Microtubules/metabolism , Tubulin Modulators/chemistry , Antineoplastic Agents/chemistry , Antineoplastic Agents/toxicity , Binding Sites , Humans , Proteomics , Thermodynamics , Tubulin/metabolism , Tubulin Modulators/toxicity
13.
J Biol Chem ; 284(48): 33151-60, 2009 Nov 27.
Article in English | MEDLINE | ID: mdl-19801640

ABSTRACT

SifA is a Salmonella effector that is translocated into infected cells by the pathogenicity island 2-encoded type 3 secretion system. SifA is a critical virulence factor. Previous studies demonstrated that, upon translocation, SifA binds the pleckstrin homology motif of the eukaryotic host protein SKIP. In turn, the SifA-SKIP complex regulates the mobilization of the molecular motor kinesin-1 on the bacterial vacuole. SifA exhibits multiple domains containing functional motifs. Here we performed a molecular dissection and a mutational study of SifA to evaluate the relative contribution of the different domains to SifA functions. Biochemical and crystallographic analysis confirmed that the N-terminal domain of SifA is sufficient to interact with the pleckstrin homology domain of SKIP, forming a 1:1 complex with a micromolar dissociation constant. Mutation of the tryptophan residue in the WXXXE motif, which has been proposed to mimic active form of GTPase, deeply affected the stability and the translocation of SifA while mutations of the glutamic residue had no functional impact. A SifA L130D mutant that does not bind SKIP showed a DeltasifA-like phenotype both in infected cells and in the mouse model of infection. We concluded that the WXXXE motif is essential for maintaining the tertiary structure of SifA, the functions of which require the interaction with the eukaryotic protein SKIP.


Subject(s)
Bacterial Proteins/metabolism , Glycoproteins/metabolism , Phosphoric Monoester Hydrolases/metabolism , Virulence Factors/metabolism , Amino Acid Motifs , Amino Acid Sequence , Animals , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Crystallography, X-Ray , Glycoproteins/chemistry , Glycoproteins/genetics , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Host-Pathogen Interactions , Kinesins/metabolism , Kinetics , Macrophages/cytology , Macrophages/metabolism , Macrophages/microbiology , Mice , Microscopy, Fluorescence , Models, Molecular , Mutation , Phosphoric Monoester Hydrolases/chemistry , Phosphoric Monoester Hydrolases/genetics , Protein Binding , Protein Structure, Tertiary , Salmonella/genetics , Salmonella/pathogenicity , Salmonella/physiology , Salmonella Infections, Animal/metabolism , Salmonella Infections, Animal/microbiology , Virulence/genetics , Virulence Factors/chemistry , Virulence Factors/genetics
14.
Anal Chem ; 82(14): 6176-84, 2010 Jul 15.
Article in English | MEDLINE | ID: mdl-20552990

ABSTRACT

Tubulin is one of the major targets in cancer chemotherapy and the target of more than twenty percent of the cancer chemotherapic agents. The modulation of isoform content has been hypothesized as being a cause of resistance to treatment. Isoform differences lie mostly in the C-terminus part of the protein. Extensive characterization of this polypeptide region is therefore of critical importance. MALDI-TOF fragmentation of tubulin C-terminal domains was tested using synthetic peptides. Then, isotypes from HeLa cells were successfully characterized for the first time by in-source decay (ISD) fragmentation of their C-terminus coupled to a pseudo MS(3) technique named T(3)-sequencing. The fragmentation occurred in-source, preferentially generating y(n)-series ions. This approach required guanidination for the characterization of the beta(III)-tubulin C-terminus peptide. This study is, to our knowledge, the first example of reflectron in-source decay (reISD) of the C-terminus of a 50 kDa protein. This potentially occurs via a CID-like mechanism occurring in the MALDI plume. There are now new avenues for top-down characterization of important clinical biomarkers such as beta(III)-tubulin isotypes, a potential marker of drug resistance and tumor progression. This paper raises the challenge of protein isotypes characterization for early cancer detection and treatment monitoring.


Subject(s)
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Tubulin/chemistry , Amino Acid Sequence , Disease Progression , HeLa Cells , Humans , Molecular Sequence Data , Neoplasms/diagnosis , Protein Isoforms/chemistry , Protein Structure, Tertiary
15.
J Virol ; 83(13): 6534-45, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19386706

ABSTRACT

Macro domains (also called "X domains") constitute a protein module family present in all kingdoms of life, including viruses of the Coronaviridae and Togaviridae families. Crystal structures of the macro domain from the Chikungunya virus (an "Old World" alphavirus) and the Venezuelan equine encephalitis virus (a "New World" alphavirus) were determined at resolutions of 1.65 and 2.30 A, respectively. These domains are active as adenosine di-phosphoribose 1''-phosphate phosphatases. Both the Chikungunya and the Venezuelan equine encephalitis virus macro domains are ADP-ribose binding modules, as revealed by structural and functional analysis. A single aspartic acid conserved through all macro domains is responsible for the specific binding of the adenine base. Sequence-unspecific binding to long, negatively charged polymers such as poly(ADP-ribose), DNA, and RNA is observed and attributed to positively charged patches outside of the active site pocket, as judged by mutagenesis and binding studies. The crystal structure of the Chikungunya virus macro domain with an RNA trimer shows a binding mode utilizing the same adenine-binding pocket as ADP-ribose, but avoiding the ADP-ribose 1''-phosphate phosphatase active site. This leaves the AMP binding site as the sole common feature in all macro domains.


Subject(s)
Chikungunya virus/chemistry , Encephalitis Virus, Venezuelan Equine/chemistry , Viral Nonstructural Proteins/chemistry , Adenosine Diphosphate Ribose/analogs & derivatives , Adenosine Diphosphate Ribose/metabolism , Amino Acid Sequence , Binding Sites , Chikungunya virus/genetics , Conserved Sequence , Encephalitis Virus, Venezuelan Equine/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Structure, Tertiary , RNA, Viral/metabolism , Structure-Activity Relationship , Viral Nonstructural Proteins/genetics
16.
Proteomics ; 9(6): 1593-616, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19253299

ABSTRACT

The proteome of Tropheryma whipplei, the intracellular bacterium responsible for Whipple's disease (WD), was analyzed using two complementary approaches: 2-DE coupled with MALDI-TOF and SDS-PAGE with nanoLC-MS/MS. This strategy led to the identification of 206 proteins of 808 predicted ORFs, resolving some questions raised by the genomic sequence of this bacterium. We successfully identified antibiotic targets and proteins with predicted N-terminal signal sequences. Additionally, we identified a family of surface proteins (known as T. whipplei surface proteins (WiSPs)), which are encoded by a unique group of species-specific genes and serve as both coding regions and DNA repeats that promote genomic recombination. Comparison of the protein expression profiles of the intracellular facultative host-associated WD bacterium with other host-associated, intracellular obligate, and environmental bacteria revealed that T. whipplei shares a proteomic expression profile with other host-associated facultative intracellular bacteria. In summary, this study describes the global protein expression pattern of T. whipplei and reveals some specific features of the T. whipplei proteome.


Subject(s)
Proteomics/methods , Tropheryma/metabolism , Whipple Disease/microbiology , Amino Acid Sequence , Bacterial Proteins/analysis , Bacterial Proteins/chemistry , Chromatography, Liquid , Electrophoresis, Gel, Two-Dimensional , Electrophoresis, Polyacrylamide Gel , Genome, Bacterial , Humans , Mass Spectrometry , Molecular Sequence Data , Nanotechnology , Tropheryma/genetics
17.
J Hepatol ; 51(1): 114-26, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19443070

ABSTRACT

BACKGROUND/AIMS: The aim of this study was to identify human liver proteins that are associated with different stages of liver development. METHODS: We collected liver samples from 14 fetuses between 14 and 41 weeks of development, one child and four adults. Proteins which exhibited consistent and significant variations during development by two-dimensional differential in gel electrophoresis (2D-DIGE) were subjected to peptide mass fingerprint analysis by MALDI-TOF mass spectrometry. Real-time PCR analysis confirmed, at the transcriptional level, the data obtained by the proteomic approach. RESULTS: Among a total of 80 protein spots showing differential expression, we identified 42 different proteins or polypeptide chains, of which 26 were upregulated and 16 downregulated in developing in comparison to adult liver. These proteins could be classified in specific groups according to their function. By comparing their temporal expression profiles, we identified protein groups that were associated with different developmental stages of human fetal liver and suggest that the changes in protein expression observed during the 20- to 36-week time window play a pivotal role in liver development. CONCLUSIONS: The identification of these proteins may represent good markers of human liver and stem cells differentiation.


Subject(s)
Electrophoresis, Gel, Two-Dimensional/methods , Liver/chemistry , Liver/embryology , Proteomics , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Adult , Calcium Channels/analysis , Calcium Channels/physiology , Chaperonin Containing TCP-1 , Chaperonins/analysis , Chaperonins/physiology , Humans , Intercellular Signaling Peptides and Proteins , Liver/metabolism , Proteins/analysis , Proteins/physiology , RNA, Messenger/analysis , TRPV Cation Channels/analysis , TRPV Cation Channels/physiology
18.
FASEB J ; 22(9): 3358-69, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18511551

ABSTRACT

Exosomes are vesicles secreted by most hematopoietic cells on fusion of multivesicular endosomes with the plasma membrane. Many studies have reported that exosomes may also be released by tumor cells. Exosomes are believed to play an antitumor role through immune cells. We asked whether tumor exosomes have biological activities on tumor cells. We report that human pancreatic tumor nanoparticles, exosome-like as characterized by proteomic analyses and rich in lipid rafts, decreased tumor cell proliferation. Nanoparticles increased Bax and decreased Bcl-2 expressions. Caspase-3 and -9 but not caspase-8 inhibitors impaired apoptosis, which implicates the mitochondria apoptotic pathway. The ceramide-sphingomyelin apoptotic pathway was inoperative. Moreover, nanoparticles induced phosphatase and tensin homolog (PTEN) and glycogen synthase kinase (GSK) -3beta activation and decreased pyruvate dehydrogenase activity. In nanoparticle-treated cells, PTEN formed complexes with actin, beta-catenin, and GSK-3beta. Thus, beta-catenin may no longer be available to activate the survival pathway. Nanoparticles triggered the down-regulation of cyclin D1 and poly(ADP-ribose) polymerase. Hence, nanoparticles counteracted the constitutively activated phosphatidylinositol 3-kinase/Akt survival pathway to drive tumor cells toward apoptosis. Our study provides the first evidence of an apoptotic function of tumor-derived nanoparticles on tumor cells. We propose a new role for nanoparticles, i.e., as signal carriers for interaction between cells, which may have implications in physiopathological situations.


Subject(s)
Apoptosis/drug effects , Membrane Microdomains , Nanoparticles , Pancreatic Neoplasms/pathology , Caspase Inhibitors , Cell Line, Tumor , Ceramides/physiology , Endosomes/physiology , Glycogen Synthase Kinase 3/physiology , Glycogen Synthase Kinase 3 beta , Humans , Lipids/analysis , Membrane Microdomains/physiology , Neoplasm Proteins/analysis , PTEN Phosphohydrolase/metabolism , Pancreatic Neoplasms/physiopathology , Phosphatidylinositol 3-Kinases/physiology , Poly(ADP-ribose) Polymerases/metabolism , Proto-Oncogene Proteins c-akt/physiology , Proto-Oncogene Proteins c-bcl-2/biosynthesis , Pyruvate Dehydrogenase Complex/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , bcl-2-Associated X Protein/biosynthesis
19.
Med Chem ; 5(2): 182-90, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19275717

ABSTRACT

The most widely used molecules in cancer chemotherapy are Vinca-alkaloids and Taxoids, numerous chemists attempted the synthesis of analogs which bind to their well-known tubulin pharmacological site. Unfortunately, tumors develop resistance to these compounds; therefore the definition of anchoring points and potential binding sites for new drugs on tubulin is of major interest. Caulerpenyne (Cyn), the major secondary metabolite synthesized by the green marine alga Caulerpa taxifolia could be one of these drugs, since it inhibits the assembly of tubulin and MTP (Barbier et al., 2001). We observed that the tubulin-Cyn complex is poorly reversed. Cyn did not bind to sulfhydryl groups and the measure of the extent of binding is 1.6 +/- 0.2 suggesting two potential binding sites. Then, we demonstrated by competition measurements that Cyn did not interact to colchicine, Taxol and Vinca-alkaloid binding domain. Finally, mass spectrometric analysis of proteolytic cleavage of tubulin-Cyn complex demonstrated that Cyn did not bind covalently to tubulin and evidenced two good candidate regions for Cyn binding, one on alpha-tubulin and the other on beta-tubulin.


Subject(s)
Sesquiterpenes/chemistry , Tubulin/chemistry , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Binding Sites , Binding, Competitive , Colchicine/chemistry , Colchicine/metabolism , Depsipeptides/chemistry , Depsipeptides/metabolism , Isomerism , Lactams/chemistry , Lactams/metabolism , Lactones/chemistry , Lactones/metabolism , Microtubules/chemistry , Microtubules/metabolism , Microtubules/ultrastructure , Models, Molecular , Paclitaxel/chemistry , Paclitaxel/metabolism , Protein Binding , Protein Conformation , Sesquiterpenes/metabolism , Sheep , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Sulfhydryl Compounds/chemistry , Titrimetry , Trypsin/chemistry , Tubulin/metabolism , Ultracentrifugation
20.
Anal Chim Acta ; 1041: 87-93, 2018 Dec 24.
Article in English | MEDLINE | ID: mdl-30340694

ABSTRACT

New designer drugs, as synthetic cannabinoids (SCs), continuously appear on the market and are booming due to their cannabis-like effect. New generation of smokable SCs, structurally dissimilar from Δ9-tetrahydrocannabinol (THC), have isomers with distinguishable pharmacokinetic parameters and therefore different in vivo effects. The isoforms are misidentified using conventional techniques such as gas or liquid chromatography coupled to mass spectrometry - or tandem mass - spectrometry. The aim of this study was to differentiate three positional isomers (JWH-007, JWH-019 and JWH-122) in single human hair samples, which store numerous substances revealing a way of life and consumption style. Matrix-assisted laser desorption/ionization (MALDI) combined with imaging is an innovative and powerful tool used since few years, especially in forensic research. Herein, we propose an innovative method to monitor the drugs of abuse consumption through direct mapping of the compounds with a high spatial distribution in human hair samples, by state-of-art imaging MALDI-MSn. Three positional SC isomers (JWH-007, JWH-019 and JWH-122) were analysed using high and low fragmentation energy and the resulting MS/MS and even MS3 spectra differentiated the SCs. The MALDI-MS/MS and MS3 imaging was performed on hair soaked in a mixture of the three SCs as well as on hair from self-reported SC user, proving the potential of the technique for a forensic use. Keeping in mind that spatial distribution of organics from whole hair remains a challenge, the described methodology is a very promising analytical tool to probe the consumption of complex drugs and obtain correlation with its origin.


Subject(s)
Cannabinoids/analysis , Hair/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Cannabinoids/chemistry , Chromatography, High Pressure Liquid , Humans , Isomerism , Substance Abuse Detection , Tandem Mass Spectrometry
SELECTION OF CITATIONS
SEARCH DETAIL