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1.

Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer.

Baxi, Aparna B; Li, Jie; Quach, Vi M; Pade, Leena R; Moody, Sally A; Nemes, Peter.

Proc Natl Acad Sci U S A ; 121(6): e2311625121, 2024 Feb 06.

Article in English | MEDLINE | ID: mdl-38300871

2.

Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments.

Gatto, Laurent; Aebersold, Ruedi; Cox, Juergen; Demichev, Vadim; Derks, Jason; Emmott, Edward; Franks, Alexander M; Ivanov, Alexander R; Kelly, Ryan T; Khoury, Luke; Leduc, Andrew; MacCoss, Michael J; Nemes, Peter; Perlman, David H; Petelski, Aleksandra A; Rose, Christopher M; Schoof, Erwin M; Van Eyk, Jennifer; Vanderaa, Christophe; Yates, John R; Slavov, Nikolai.

Nat Methods ; 20(3): 375-386, 2023 03.

Article in English | MEDLINE | ID: mdl-36864200

3.

Biological mass spectrometry enables spatiotemporal 'omics: From tissues to cells to organelles.

Pade, Leena R; Stepler, Kaitlyn E; Portero, Erika P; DeLaney, Kellen; Nemes, Peter.

Mass Spectrom Rev ; 43(1): 106-138, 2024.

Article in English | MEDLINE | ID: mdl-36647247

4.

Dilute to Enrich for Deeper Proteomics: A Yolk-Depleted Carrier for Limited Populations of Embryonic (Frog) Cells.

Pade, Leena R; Lombard-Banek, Camille; Li, Jie; Nemes, Peter.

J Proteome Res ; 23(2): 692-703, 2024 Feb 02.

Article in English | MEDLINE | ID: mdl-37994825

5.

Deep Proteome of the Developing Chick Midbrain.

Stepler, Kaitlyn E; Hannah, Seth C; Taneyhill, Lisa A; Nemes, Peter.

J Proteome Res ; 22(10): 3264-3274, 2023 Oct 06.

Article in English | MEDLINE | ID: mdl-37616547

6.

Microanalytical Mass Spectrometry with Super-Resolution Microscopy Reveals a Proteome Transition During Development of the Brain's Circadian Pacemaker.

Choi, Sam B; Vatan, Tarlan; Alexander, Theresa A; Zhang, Chenghang; Mitchell, Shyrice M; Speer, Colenso M; Nemes, Peter.

Anal Chem ; 95(41): 15208-15216, 2023 10 17.

Article in English | MEDLINE | ID: mdl-37792996

7.

Patch-Clamp Proteomics of Single Neurons in Tissue Using Electrophysiology and Subcellular Capillary Electrophoresis Mass Spectrometry.

Choi, Sam B; Polter, Abigail M; Nemes, Peter.

Anal Chem ; 94(3): 1637-1644, 2022 01 25.

Article in English | MEDLINE | ID: mdl-34964611

8.

Microanalysis of Brain Angiotensin Peptides Using Ultrasensitive Capillary Electrophoresis Trapped Ion Mobility Mass Spectrometry.

DeLaney, Kellen; Jia, Dashuang; Iyer, Laxmi; Yu, Zhe; Choi, Sam B; Marvar, Paul J; Nemes, Peter.

Anal Chem ; 94(25): 9018-9025, 2022 06 28.

Article in English | MEDLINE | ID: mdl-35696295

9.

Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries.

Onjiko, Rosemary M; Nemes, Peter; Moody, Sally A.

Genesis ; 59(5-6): e23418, 2021 06.

Article in English | MEDLINE | ID: mdl-33826226

10.

Data-Dependent Acquisition Ladder for Capillary Electrophoresis Mass Spectrometry-Based Ultrasensitive (Neuro)Proteomics.

Choi, Sam B; Muñoz-LLancao, Pablo; Manzini, M Chiara; Nemes, Peter.

Anal Chem ; 93(48): 15964-15972, 2021 12 07.

Article in English | MEDLINE | ID: mdl-34812615

11.

In Vivo Subcellular Mass Spectrometry Enables Proteo-Metabolomic Single-Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (X. laevis)*.

Lombard-Banek, Camille; Li, Jie; Portero, Erika P; Onjiko, Rosemary M; Singer, Chase D; Plotnick, David O; Al Shabeeb, Reem Q; Nemes, Peter.

Angew Chem Int Ed Engl ; 60(23): 12852-12858, 2021 06 01.

Article in English | MEDLINE | ID: mdl-33682213

12.

Capillary Electrophoresis-Mass Spectrometry at Trial by Metabo-Ring: Effective Electrophoretic Mobility for Reproducible and Robust Compound Annotation.

Drouin, Nicolas; van Mever, Marlien; Zhang, Wei; Tobolkina, Elena; Ferre, Sabrina; Servais, Anne-Catherine; Gou, Marie-Jia; Nyssen, Laurent; Fillet, Marianne; Lageveen-Kammeijer, Guinevere S M; Nouta, Jan; Chetwynd, Andrew J; Lynch, Iseult; Thorn, James A; Meixner, Jens; Lößner, Christopher; Taverna, Myriam; Liu, Sylvie; Tran, N Thuy; Francois, Yannis; Lechner, Antony; Nehmé, Reine; Al Hamoui Dit Banni, Ghassan; Nasreddine, Rouba; Colas, Cyril; Lindner, Herbert H; Faserl, Klaus; Neusüß, Christian; Nelke, Manuel; Lämmerer, Stefan; Perrin, Catherine; Bich-Muracciole, Claudia; Barbas, Coral; Gonzálvez, Ángeles López; Guttman, Andras; Szigeti, Marton; Britz-McKibbin, Philip; Kroezen, Zachary; Shanmuganathan, Meera; Nemes, Peter; Portero, Erika P; Hankemeier, Thomas; Codesido, Santiago; González-Ruiz, Víctor; Rudaz, Serge; Ramautar, Rawi.

Anal Chem ; 92(20): 14103-14112, 2020 10 20.

Article in English | MEDLINE | ID: mdl-32961048

13.

Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos.

Lombard-Banek, Camille; Moody, Sally A; Manzini, M Chiara; Nemes, Peter.

Anal Chem ; 91(7): 4797-4805, 2019 04 02.

Article in English | MEDLINE | ID: mdl-30827088

14.

Trace, Machine Learning of Signal Images for Trace-Sensitive Mass Spectrometry: A Case Study from Single-Cell Metabolomics.

Liu, Zhichao; Portero, Erika P; Jian, Yiren; Zhao, Yunjie; Onjiko, Rosemary M; Zeng, Chen; Nemes, Peter.

Anal Chem ; 91(9): 5768-5776, 2019 05 07.

Article in English | MEDLINE | ID: mdl-30929422

15.

Deciphering Metabolic Heterogeneity by Single-Cell Analysis.

Evers, Tom M J; Hochane, Mazène; Tans, Sander J; Heeren, Ron M A; Semrau, Stefan; Nemes, Peter; Mashaghi, Alireza.

Anal Chem ; 91(21): 13314-13323, 2019 11 05.

Article in English | MEDLINE | ID: mdl-31549807

16.

Mass spectrometry comes of age for subcellular organelles.

Nemes, Peter.

Nat Methods ; 18(10): 1157-1158, 2021 10.

Article in English | MEDLINE | ID: mdl-34608316

17.

Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS.

Portero, Erika P; Nemes, Peter.

Analyst ; 144(3): 892-900, 2019 Jan 28.

Article in English | MEDLINE | ID: mdl-30542678

18.

A microanalytical capillary electrophoresis mass spectrometry assay for quantifying angiotensin peptides in the brain.

Lombard-Banek, Camille; Yu, Zhe; Swiercz, Adam P; Marvar, Paul J; Nemes, Peter.

Anal Bioanal Chem ; 411(19): 4661-4671, 2019 Jul.

Article in English | MEDLINE | ID: mdl-30953113

19.

Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS).

Lombard-Banek, Camille; Reddy, Sushma; Moody, Sally A; Nemes, Peter.

Mol Cell Proteomics ; 15(8): 2756-68, 2016 08.

Article in English | MEDLINE | ID: mdl-27317400

20.

Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo.

Onjiko, Rosemary M; Moody, Sally A; Nemes, Peter.

Proc Natl Acad Sci U S A ; 112(21): 6545-50, 2015 May 26.

Article in English | MEDLINE | ID: mdl-25941375

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