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1.

Dnmt3L antagonizes DNA methylation at bivalent promoters and favors DNA methylation at gene bodies in ESCs.

Neri, Francesco; Krepelova, Anna; Incarnato, Danny; Maldotti, Mara; Parlato, Caterina; Galvagni, Federico; Matarese, Filomena; Stunnenberg, Hendrik G; Oliviero, Salvatore.

Cell ; 155(1): 121-34, 2013 Sep 26.

Article in English | MEDLINE | ID: mdl-24074865

2.

NR2F1 regulates regional progenitor dynamics in the mouse neocortex and cortical gyrification in BBSOAS patients.

Bertacchi, Michele; Romano, Anna Lisa; Loubat, Agnès; Tran Mau-Them, Frederic; Willems, Marjolaine; Faivre, Laurence; Khau van Kien, Philippe; Perrin, Laurence; Devillard, Françoise; Sorlin, Arthur; Kuentz, Paul; Philippe, Christophe; Garde, Aurore; Neri, Francesco; Di Giaimo, Rossella; Oliviero, Salvatore; Cappello, Silvia; D'Incerti, Ludovico; Frassoni, Carolina; Studer, Michèle.

EMBO J ; 39(13): e104163, 2020 07 01.

Article in English | MEDLINE | ID: mdl-32484994

3.

Genome-scale deconvolution of RNA structure ensembles.

Morandi, Edoardo; Manfredonia, Ilaria; Simon, Lisa M; Anselmi, Francesca; van Hemert, Martijn J; Oliviero, Salvatore; Incarnato, Danny.

Nat Methods ; 18(3): 249-252, 2021 03.

Article in English | MEDLINE | ID: mdl-33619392

4.

Unscrambling Quantum Information with Clifford Decoders.

Oliviero, Salvatore F E; Leone, Lorenzo; Lloyd, Seth; Hamma, Alioscia.

Phys Rev Lett ; 132(8): 080402, 2024 Feb 23.

Article in English | MEDLINE | ID: mdl-38457728

5.

Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation.

Zippo, Alessio; Serafini, Riccardo; Rocchigiani, Marina; Pennacchini, Susanna; Krepelova, Anna; Oliviero, Salvatore.

Cell ; 138(6): 1122-36, 2009 Sep 18.

Article in English | MEDLINE | ID: mdl-19766566

6.

The acetyltransferase p300 is recruited in trans to multiple enhancer sites by lncSmad7.

Maldotti, Mara; Lauria, Andrea; Anselmi, Francesca; Molineris, Ivan; Tamburrini, Annalaura; Meng, Guohua; Polignano, Isabelle Laurence; Scrivano, Mirko Giuseppe; Campestre, Fabiola; Simon, Lisa Marie; Rapelli, Stefania; Morandi, Edoardo; Incarnato, Danny; Oliviero, Salvatore.

Nucleic Acids Res ; 50(5): 2587-2602, 2022 03 21.

Article in English | MEDLINE | ID: mdl-35137201

7.

TFEB controls vascular development by regulating the proliferation of endothelial cells.

Doronzo, Gabriella; Astanina, Elena; Corà, Davide; Chiabotto, Giulia; Comunanza, Valentina; Noghero, Alessio; Neri, Francesco; Puliafito, Alberto; Primo, Luca; Spampanato, Carmine; Settembre, Carmine; Ballabio, Andrea; Camussi, Giovanni; Oliviero, Salvatore; Bussolino, Federico.

EMBO J ; 38(3)2019 02 01.

Article in English | MEDLINE | ID: mdl-30591554

8.

SNAI1 is upregulated during muscle regeneration and represses FGF21 and ATF3 expression by directly binding their promoters.

Elia, Ines; Realini, Giulia; Di Mauro, Vittoria; Borghi, Sara; Bottoni, Laura; Tornambè, Salvatore; Vitiello, Libero; Weiss, Stephen J; Chiariello, Mario; Tamburrini, Annalaura; Oliviero, Salvatore; Neri, Francesco; Orlandini, Maurizio; Galvagni, Federico.

FASEB J ; 36(7): e22401, 2022 07.

Article in English | MEDLINE | ID: mdl-35726676

9.

Hair follicle stem cell progeny heal blisters while pausing skin development.

Fujimura, Yu; Watanabe, Mika; Ohno, Kota; Kobayashi, Yasuaki; Takashima, Shota; Nakamura, Hideki; Kosumi, Hideyuki; Wang, Yunan; Mai, Yosuke; Lauria, Andrea; Proserpio, Valentina; Ujiie, Hideyuki; Iwata, Hiroaki; Nishie, Wataru; Nagayama, Masaharu; Oliviero, Salvatore; Donati, Giacomo; Shimizu, Hiroshi; Natsuga, Ken.

EMBO Rep ; 22(7): e50882, 2021 07 05.

Article in English | MEDLINE | ID: mdl-34085753

10.

Intragenic DNA methylation prevents spurious transcription initiation.

Neri, Francesco; Rapelli, Stefania; Krepelova, Anna; Incarnato, Danny; Parlato, Caterina; Basile, Giulia; Maldotti, Mara; Anselmi, Francesca; Oliviero, Salvatore.

Nature ; 543(7643): 72-77, 2017 03 02.

Article in English | MEDLINE | ID: mdl-28225755

11.

Hmga2 protein loss alters nuclear envelope and 3D chromatin structure.

Divisato, Giuseppina; Chiariello, Andrea M; Esposito, Andrea; Zoppoli, Pietro; Zambelli, Federico; Elia, Maria Antonietta; Pesole, Graziano; Incarnato, Danny; Passaro, Fabiana; Piscitelli, Silvia; Oliviero, Salvatore; Nicodemi, Mario; Parisi, Silvia; Russo, Tommaso.

BMC Biol ; 20(1): 171, 2022 08 02.

Article in English | MEDLINE | ID: mdl-35918713

12.

Stabilizer Rényi Entropy.

Leone, Lorenzo; Oliviero, Salvatore F E; Hamma, Alioscia.

Phys Rev Lett ; 128(5): 050402, 2022 Feb 04.

Article in English | MEDLINE | ID: mdl-35179939

13.

Identification of altered biological processes in heterogeneous RNA-sequencing data by discretization of expression profiles.

Lauria, Andrea; Peirone, Serena; Giudice, Marco Del; Priante, Francesca; Rajan, Prabhakar; Caselle, Michele; Oliviero, Salvatore; Cereda, Matteo.

Nucleic Acids Res ; 48(4): 1730-1747, 2020 02 28.

Article in English | MEDLINE | ID: mdl-31889184

14.

The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders.

Liaci, Carla; Prandi, Lucia; Pavinato, Lisa; Brusco, Alfredo; Maldotti, Mara; Molineris, Ivan; Oliviero, Salvatore; Merlo, Giorgio R.

Int J Mol Sci ; 23(11)2022 May 30.

Article in English | MEDLINE | ID: mdl-35682796

15.

Molecular dynamics of targeting CD38 in multiple myeloma.

Malavasi, Fabio; Faini, Angelo C; Morandi, Fabio; Castella, Barbara; Incarnato, Danny; Oliviero, Salvatore; Horenstein, Alberto L; Massaia, Massimo; van de Donk, Niels W C J; Richardson, Paul G.

Br J Haematol ; 193(3): 581-591, 2021 05.

Article in English | MEDLINE | ID: mdl-33570193

16.

In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs.

Simon, Lisa Marie; Morandi, Edoardo; Luganini, Anna; Gribaudo, Giorgio; Martinez-Sobrido, Luis; Turner, Douglas H; Oliviero, Salvatore; Incarnato, Danny.

Nucleic Acids Res ; 47(13): 7003-7017, 2019 07 26.

Article in English | MEDLINE | ID: mdl-31053845

17.

Expression and Function of C1orf132 Long-Noncoding RNA in Breast Cancer Cell Lines and Tissues.

Shafaroudi, Afsaneh Malekzadeh; Sharifi-Zarchi, Ali; Rahmani, Saeid; Nafissi, Nahid; Mowla, Seyed Javad; Lauria, Andrea; Oliviero, Salvatore; Matin, Maryam M.

Int J Mol Sci ; 22(13)2021 Jun 23.

Article in English | MEDLINE | ID: mdl-34201896

18.

Genome-Wide Analysis of Smad7-Mediated Transcription in Mouse Embryonic Stem Cells.

Meng, Guohua; Lauria, Andrea; Maldotti, Mara; Anselmi, Francesca; Polignano, Isabelle Laurence; Rapelli, Stefania; Donna, Daniela; Oliviero, Salvatore.

Int J Mol Sci ; 22(24)2021 Dec 18.

Article in English | MEDLINE | ID: mdl-34948395

19.

Isospectral Twirling and Quantum Chaos.

Leone, Lorenzo; Oliviero, Salvatore F E; Hamma, Alioscia.

Entropy (Basel) ; 23(8)2021 Aug 19.

Article in English | MEDLINE | ID: mdl-34441214

20.

RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications.

Incarnato, Danny; Morandi, Edoardo; Simon, Lisa Marie; Oliviero, Salvatore.

Nucleic Acids Res ; 46(16): e97, 2018 09 19.

Article in English | MEDLINE | ID: mdl-29893890

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